Miyakogusa Predicted Gene

Lj2g3v1373360.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1373360.2 Non Characterized Hit- tr|G7JAI8|G7JAI8_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,63.27,0.00000000004,no description,Nucleotide-binding,
alpha-beta plait; RRM,RNA recognition motif domain;
coiled-coil,N,CUFF.36859.2
         (446 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g035330.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   368   e-102

>Medtr5g035330.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:15369382-15365979 | 20130731
          Length = 423

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/447 (48%), Positives = 261/447 (58%), Gaps = 25/447 (5%)

Query: 1   MLRATAFXXXXXXXXXXXRAHTCHSLAPARVVQSSPSSISRFEFRLFQQPCVKSLCAVRG 60
           MLRATAF           R HTC  L P RV+    S ISR +FR   +  VKSL  V G
Sbjct: 1   MLRATAFPAPNNSTVILSRNHTCPYLEPTRVIFPRSSFISRLQFR---RTSVKSLLTVHG 57

Query: 61  GGVFTAVAKKKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           GG   A AKK+ R                                               
Sbjct: 58  GGFIPAAAKKEVRGSTSIVDEIEEEFDEEGEYEEEEGEEDEEVDVEEEEIVG-------- 109

Query: 121 XXLPLEQMKQWFDKKPKGFGEGKVYDTSVEDKLLEELRQSREAQAANLEKFKANPVKPAS 180
                ++MK+W++KKPKGFGEGKVYDTSVEDKL EE+++S++AQA NL+K K NP+K   
Sbjct: 110 ----YDEMKEWWEKKPKGFGEGKVYDTSVEDKLFEEMQKSKQAQALNLKKLKTNPIK--- 162

Query: 181 NKNAQNQKDAEVVPLGGRVLLANLPKKKNIHRDLKSAMQGVPGIINIAPAVTGNKKTRDP 240
             N   + D  VVP+  RV L NLPKK+ I RDLKSA QG+PGI NI PAV GNKKTRDP
Sbjct: 163 -NNVTKKIDEIVVPVRSRVRLVNLPKKRKIDRDLKSAFQGIPGITNIVPAVIGNKKTRDP 221

Query: 241 ICKGFAFVDFKDKKDAVRFVELYTGQTLTFGKIQKQIKCEVVNAQXXXXXPELSKNLG-A 299
           +CKGFAFVDFK + DA+RFVELYTGQT+TFGKIQK IKCE+VNAQ     P L++N+  A
Sbjct: 222 VCKGFAFVDFKHEDDAIRFVELYTGQTITFGKIQKPIKCELVNAQ-SSSPPGLNQNINTA 280

Query: 300 LPRLMDSPFXXXXXXXXXXXXXAVSSWDGTDSNDLDEEQESDGENQEYATALDVDFDDSV 359
           LP L    F             A ++WD T+ +D DE QESDGE+QE+AT L VD DDSV
Sbjct: 281 LPLL--PSFEEDSNEDSNIDDSAFNTWDETEVDDSDELQESDGESQEFATVLTVDSDDSV 338

Query: 360 EMTIDSEINPLPSEQGTINPTAEPEKKSSAKFRQXXXXXXXXXXXXXXXXXXXXXGSAKR 419
           +MT  SEI  L S+Q    P+A  +KKS+   +Q                     GSAKR
Sbjct: 339 QMTNGSEIESLLSKQVDRKPSA--DKKSAVNVKQENAPKKKSNQKENTKKVLDVPGSAKR 396

Query: 420 LKIKEKAVLTDVFSKYGKRAVLASKDN 446
           LKIKEKAVL+DVFSKYG +A LASK++
Sbjct: 397 LKIKEKAVLSDVFSKYGSKAALASKES 423