Miyakogusa Predicted Gene

Lj2g3v1373360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1373360.1 tr|Q6Z867|Q6Z867_ORYSJ RNA recognition motif
(RRM)-containing protein-like OS=Oryza sativa subsp.
ja,42.37,2e-17,RRM_1,RNA recognition motif domain; seg,NULL;
RNA-binding domain, RBD,NULL; no description,Nucleotid,CUFF.36859.1
         (210 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g035330.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   160   1e-39

>Medtr5g035330.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:15369382-15365979 | 20130731
          Length = 423

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/144 (56%), Positives = 97/144 (67%), Gaps = 14/144 (9%)

Query: 62  VIPIGGRVRLANLPKKRNIDRDLKSAMQGVPGIINIVPAVTGNKKTRDPICKGFAFVDFK 121
           V+P+  RVRL NLPKKR IDRDLKSA QG+PGI NIVPAV GNKKTRDP+CKGFAFVDFK
Sbjct: 173 VVPVRSRVRLVNLPKKRKIDRDLKSAFQGIPGITNIVPAVIGNKKTRDPVCKGFAFVDFK 232

Query: 122 RKKDAVRCVELCAGQTITFGKIQKQIKCEVVNAXXXXXXXXXXK--------NHFQKESK 173
            + DA+R VEL  GQTITFGKIQK IKCE+VNA                     F+++S 
Sbjct: 233 HEDDAIRFVELYTGQTITFGKIQKPIKCELVNAQSSSPPGLNQNINTALPLLPSFEEDSN 292

Query: 174 K------SFRNSWISKEVEDREEV 191
           +      S  N+W   EV+D +E+
Sbjct: 293 EDSNIDDSAFNTWDETEVDDSDEL 316