Miyakogusa Predicted Gene

Lj2g3v1368240.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1368240.2 Non Characterized Hit- tr|C4JA88|C4JA88_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,69.49,1e-17,Sterile
alpha motif.,Sterile alpha motif domain; SAM_1,Sterile alpha motif,
type 1; SUBFAMILY NOT NA,CUFF.36853.2
         (338 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g035810.1 | SAM domain protein | HC | chr5:15589365-155823...   474   e-134
Medtr8g012995.1 | SAM domain protein | HC | chr8:4010461-4016358...    84   2e-16

>Medtr5g035810.1 | SAM domain protein | HC | chr5:15589365-15582381
           | 20130731
          Length = 336

 Score =  474 bits (1219), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/338 (73%), Positives = 270/338 (79%), Gaps = 2/338 (0%)

Query: 1   MSDTSRGRVTITLGRSGQVVKRXXXXXXXXXXXXXXXXXXKRSVRDRIGSNADSSMWHGN 60
           MS++SRGR+TITLGRSGQVVKR                  KRSVRDRIG + DSSM HGN
Sbjct: 1   MSNSSRGRITITLGRSGQVVKRDVTAVDVPYSSSMSSAGTKRSVRDRIGYSGDSSMRHGN 60

Query: 61  GLASNKRQRGDMSSRNGLDDGRIGKDDLRLKLIQKSASRQAESNDKKRHGDLREKLSKAV 120
           G++ NKRQRGD S RNG DDGRIGKDDLRLKL++KSASR+ ESND  R+ DLREKL K  
Sbjct: 61  GVSGNKRQRGDASMRNGPDDGRIGKDDLRLKLMRKSASRRDESNDNNRNVDLREKLKKTA 120

Query: 121 QPPRDSFNSKPRMPEPRERSLLRQLPPARSSDDLMRMESMRSSYSPWTLDHIRQRSPDGF 180
            PP +SFNSK  MPEPRE SL R +P ARSSDD+MRMESMR+SYSPWTLD IRQRSP+ +
Sbjct: 121 HPPTNSFNSKQHMPEPREPSLFRPVPSARSSDDIMRMESMRNSYSPWTLDQIRQRSPEEY 180

Query: 181 PSTSRGISPQRNAGDLQRRPLNRTYDSARSVPYVGRDVLETSRPPSTAPASFTSRSTMST 240
           PSTSRGISPQRNAGD QRRPLNRTYD  R V Y GRDVLETSRPPS AP+SF  RSTMST
Sbjct: 181 PSTSRGISPQRNAGDPQRRPLNRTYDGVRPVQYAGRDVLETSRPPSAAPSSFMPRSTMST 240

Query: 241 WPPVTAKSVASHPGQLPPSSSVAPRASYAGDEHQSQQTVDGLLHALGLGKYVILFKAEEV 300
            PPVTAK V SHPG+LPPS SV  R  + G+E Q  QTVDGLL ALGL KY ILFKAEEV
Sbjct: 241 LPPVTAKPVPSHPGRLPPSGSVPQRPPFVGNEQQP-QTVDGLLQALGLQKYQILFKAEEV 299

Query: 301 DMTALKQMGENDLKELGIPMGPRKKILLALMPRTKRPH 338
           DMTAL+QMGENDLKELGIPMGPRKK+LLAL+PR KRP 
Sbjct: 300 DMTALRQMGENDLKELGIPMGPRKKLLLALLPR-KRPQ 336


>Medtr8g012995.1 | SAM domain protein | HC | chr8:4010461-4016358 |
           20130731
          Length = 206

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 22/168 (13%)

Query: 170 DHIRQRSPDGFPSTSRGISPQRNAGDLQRRPLNRTYDSARSVPYVGRDVLE------TSR 223
           D + Q  P    +T+R ++ Q     LQ++ L     S +S     RD+ E       ++
Sbjct: 50  DDVEQEQPR---TTNRKVTGQDLRVKLQKKGLQPATRSGKSSTPSTRDLRERLSGTMNTQ 106

Query: 224 PPSTAPASFTSRSTMSTWPPVTAKSV-ASHPGQLPPSSSVAPRASYAGDEHQSQQTVDGL 282
           P ++ P     +S +   P  ++KSV A  P    P++    +A  AG       TVD  
Sbjct: 107 PKNSDPP----KSKVIAKP--SSKSVGAEAPAVKRPANPAPKKARKAG------TTVDEF 154

Query: 283 LHALGLGKYVILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLAL 330
           L  LGL KY+I F+AEEVDMTALK M + DLK +GIPMGPRKKILLAL
Sbjct: 155 LLTLGLEKYLITFQAEEVDMTALKHMTDEDLKVMGIPMGPRKKILLAL 202