Miyakogusa Predicted Gene
- Lj2g3v1365820.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1365820.1 tr|G7K5N2|G7K5N2_MEDTR ATP-dependent RNA helicase
DOB1 OS=Medicago truncatula GN=MTR_5g036660 PE=4
S,79.85,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2, ATP-binding
domain; HELICASE_CTER,Helicase, C-termina,CUFF.36828.1
(1177 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g036660.1 | DEAD-box ATP-dependent RNA helicase ISE2 | HC ... 1847 0.0
Medtr3g462290.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein... 264 4e-70
Medtr8g101340.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein... 261 3e-69
Medtr7g080730.1 | superkiller viralicidic activity-like protein ... 257 4e-68
Medtr5g069360.1 | DEAD/DEAH-box RNA helicase | HC | chr5:2940354... 244 4e-64
Medtr7g075463.1 | ATP-binding; ATP-dependent helicase; DNA helic... 100 1e-20
Medtr7g075463.2 | ATP-binding; ATP-dependent helicase; DNA helic... 100 1e-20
Medtr7g075463.4 | ATP-binding; ATP-dependent helicase; DNA helic... 100 1e-20
Medtr7g075463.3 | ATP-binding; ATP-dependent helicase; DNA helic... 100 1e-20
Medtr1g008600.1 | ATP-binding; ATP-dependent helicase; DNA helic... 88 6e-17
Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | ... 73 2e-12
Medtr3g025300.2 | U5 small nuclear ribonucleoprotein helicase | ... 72 2e-12
Medtr4g011450.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 69 2e-11
Medtr4g008780.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 69 3e-11
Medtr2g064740.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 68 6e-11
Medtr4g011450.2 | U5 small nuclear ribonucleoprotein 200 kDa hel... 67 8e-11
Medtr2g030905.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 67 1e-10
Medtr4g008770.1 | U5 small nuclear ribonucleoprotein 200 kDa hel... 61 7e-09
Medtr1g007510.1 | DNA polymerase theta-like protein | HC | chr1:... 60 1e-08
Medtr0312s0040.1 | DNA polymerase theta-like protein | HC | scaf... 59 2e-08
>Medtr5g036660.1 | DEAD-box ATP-dependent RNA helicase ISE2 | HC |
chr5:16017947-16009934 | 20130731
Length = 1155
Score = 1847 bits (4783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 905/1052 (86%), Positives = 955/1052 (90%), Gaps = 9/1052 (0%)
Query: 126 FKWQRVEKLCNEVREFGAEIIDVDELASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSG 185
FKWQRVEKLCNEVREFG IIDVDELASVYDFRIDKFQR A+QAFLRGSSVVVSAPTSSG
Sbjct: 113 FKWQRVEKLCNEVREFGVGIIDVDELASVYDFRIDKFQRQAIQAFLRGSSVVVSAPTSSG 172
Query: 186 KTLIXXXXXXXXXXRGRRIFYTTPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQV 245
KTLI RGRR+FYTTPLKALSNQKFREFRETFGDS VGLLTGDSAVNKDAQV
Sbjct: 173 KTLIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQV 232
Query: 246 LIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEV 305
LIMTTEILRNMLYQSVGNVSS SGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPK V
Sbjct: 233 LIMTTEILRNMLYQSVGNVSSG-SGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKAV 291
Query: 306 QLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSMKNSLLPLLDEKGTRMN 365
QLICLSATVANPDELAGWIGQIHG TELVTSSKRPVPL WHFS+KNSLLPLLD+KGT+MN
Sbjct: 292 QLICLSATVANPDELAGWIGQIHGGTELVTSSKRPVPLNWHFSLKNSLLPLLDDKGTQMN 351
Query: 366 RKLSLNYLQLQAAGYKPYKDDWSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRS 425
RKLSLNYL+LQAA KPYKDDW RKRN+RKRG R SYD D+ M EQRSLSKN+INAIRRS
Sbjct: 352 RKLSLNYLKLQAAEAKPYKDDWPRKRNSRKRGTRTSYDIDDRMLEQRSLSKNDINAIRRS 411
Query: 426 QVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRI 485
QVPQIIDTLWH++ RDMLPA+WFIFSRKGCDAAVQY+EDCKLLDECE SEV LALKRFRI
Sbjct: 412 QVPQIIDTLWHLQSRDMLPAVWFIFSRKGCDAAVQYVEDCKLLDECEASEVLLALKRFRI 471
Query: 486 QYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPAR 545
QYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQ+GLVKVVFATETLAAGINMPAR
Sbjct: 472 QYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPAR 531
Query: 546 TAVISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFA 605
TAVISSLSKR D+GR L+SNELLQMAGRAGRRGIDESGHVVL+QTPNEGAEECCKVLF+
Sbjct: 532 TAVISSLSKRSDTGRTLLTSNELLQMAGRAGRRGIDESGHVVLVQTPNEGAEECCKVLFS 591
Query: 606 GLEPLVSQFTASYGMVLNLLSGVKAIHRSNESDDMRQSTGGRTLEDARKLVEQSFGNYVS 665
GLEPLVSQFTASYGMVLNLL G KA+ RSN SD+M+ S+ G+TL++ARKL+EQSFGNYVS
Sbjct: 592 GLEPLVSQFTASYGMVLNLLGGGKALRRSNTSDEMKTSS-GKTLDEARKLIEQSFGNYVS 650
Query: 666 SNVMXXXXXXXXXXXXXXXXXMSEITDEAIDRKSRKALSQKQYKEIAELQEDLRAEKRVR 725
S+VM MSEITDEAIDRKSRKALSQ+QYKEIAELQE+LRAEKR+R
Sbjct: 651 SSVMLAAKEELNRIEKEIQLLMSEITDEAIDRKSRKALSQRQYKEIAELQENLRAEKRIR 710
Query: 726 TALRRQMEAKRISALKPLLDDPESGHLPFLCLQYRDSEGVLHSIPAVFLGKVDSLNASKL 785
LRRQ E KRISALKPLL+ ES +LPFLCLQYRDS+GV HSIPAVFLGKVDSL A KL
Sbjct: 711 AELRRQKETKRISALKPLLE--ESENLPFLCLQYRDSDGVQHSIPAVFLGKVDSLGALKL 768
Query: 786 KDMISSVDSFALNVADAERSLPDSVLNEDLEPSYHVALGSDNSWYLFTEKWIKTVYGTGF 845
K+MI SVDSFALN ADA DS LNED PSYHVALGSDNSWYLFTEKWIKTVY TGF
Sbjct: 769 KNMIGSVDSFALNSADA-----DSELNEDPVPSYHVALGSDNSWYLFTEKWIKTVYETGF 823
Query: 846 PDTPLAQGDARPREIMSTLLDKEDMKWDKLAHSEHGGLWFMEGSLETWSWSLNVPVLSSF 905
PD PL QGD RPREIMS LLDKEDMKWD LA+SEHGGLW EGSLETWSWSLNVP LSSF
Sbjct: 824 PDVPLVQGDTRPREIMSDLLDKEDMKWDNLANSEHGGLWVTEGSLETWSWSLNVPGLSSF 883
Query: 906 SENDELLLKSQAYRDAIEQYKDQRNKVSRLKKRISRTEGYKEYNKIIDGVKFIEEKIKRL 965
SEN+E+LLKSQAYRDA EQYKDQR+KV+RLKK+ISRTEG+KEYNKI+D VKFIEEKIKR+
Sbjct: 884 SENEEVLLKSQAYRDAAEQYKDQRSKVARLKKKISRTEGHKEYNKILDAVKFIEEKIKRM 943
Query: 966 KTRSKRLTNRIEQIEPSGWKEFMQVSNVIHETRALDINTHVIFPLGETAAAIRGENELWL 1025
KTRSKRLTNRIEQIEPSGWKEFMQVSNVI ETRALDINTHVI+PLGETA+AIRGENELWL
Sbjct: 944 KTRSKRLTNRIEQIEPSGWKEFMQVSNVIRETRALDINTHVIYPLGETASAIRGENELWL 1003
Query: 1026 AMVLRSKILVGLKPPQLAAVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCIGLLGEQRSA 1085
AMVLRSKIL LKP QLAAVCAGLVSEGIKVRPWKNN++IYEPSATVVN IGLL EQR+A
Sbjct: 1004 AMVLRSKILAELKPAQLAAVCAGLVSEGIKVRPWKNNNYIYEPSATVVNIIGLLDEQRNA 1063
Query: 1086 LLAIQEKHGVTISCCLDTQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQ 1145
LL IQEKHGVTISCCLD+QFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQ
Sbjct: 1064 LLTIQEKHGVTISCCLDSQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQ 1123
Query: 1146 IPKLADIDPLLQRNARAASDVMDRPPISELAG 1177
IP L DIDPLLQ+NARAA DVMDRPPISELAG
Sbjct: 1124 IPNLPDIDPLLQKNARAACDVMDRPPISELAG 1155
>Medtr3g462290.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein |
HC | chr3:24871545-24853513 | 20130731
Length = 1334
Score = 264 bits (674), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 179/534 (33%), Positives = 267/534 (50%), Gaps = 48/534 (8%)
Query: 118 DASARREEFKWQRVEKLCNEVREFGAEIIDVDELASVYDFRIDKFQRLAVQAFLRGSSVV 177
D ++++ W ++E F I D +A + F +D FQ+ A+ +G SV
Sbjct: 311 DVVGQKQKLAWAKLEDSEEIAGRFHELIPD---MALEFPFELDAFQKKAIYYLEKGESVF 367
Query: 178 VSAPTSSGKTLIXXXXXXXXXXRGRRIFYTTPLKALSNQKFREFRETFGDSYVGLLTGDS 237
V+A TS+GKT++ R YT P+K +SNQK+R+F F VGLLTGD
Sbjct: 368 VAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFD---VGLLTGDV 424
Query: 238 AVNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEI 297
++ +A LIMTTEILR+MLY+ + +++ ++ DEVHY++D+ RG VWEE+
Sbjct: 425 SLRPEASCLIMTTEILRSMLYRGADIIR-------DIEWVIFDEVHYVNDVDRGVVWEEV 477
Query: 298 VIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVT-SSKRPVPLT---------WHF 347
+I P+ + +I LSATV N E A WIG+ K VT ++KRPVPL +
Sbjct: 478 IIMLPRHINIILLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGEFYKI 537
Query: 348 SMKNSLLP--LLDEKGTRMNRKLSLNYLQLQAAGYKPYKDD---WSRKRNARKRGYRMSY 402
+ LP L K + L+ G D+ R+ R + Y ++
Sbjct: 538 CEREIFLPQGLRAAKDASRKKHLTAGVSSGPKPGTSAGHDNARGQKRENTPRTKQYGTNF 597
Query: 403 DSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDAAVQYI 462
S + + N + R + + + + + +LP + F FS+ CD + +
Sbjct: 598 SGTGSGYH----NNGNGQSRWRQEASMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADSM 653
Query: 463 EDCKLLDECEKSEVEL----ALKRFR---IQYPDAVRETAVKGLL-QGVAAHHAGCLPLW 514
L EKSE+ L A R + P VR V+ LL +G+ HHAG LP+
Sbjct: 654 TGTDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVR---VESLLRRGIGVHHAGLLPIV 710
Query: 515 KAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSGRRPLSSNELLQMAGR 574
K +E LF +G++KV+F+TET A G+N PART V ++ K R L E QMAGR
Sbjct: 711 KEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTVRKFDGKEFRQLLPGEYTQMAGR 770
Query: 575 AGRRGIDESGHVVLI---QTPNEGAEECCKVLFAGLEPLVSQFTASYGMVLNLL 625
AGRRG+D G V+L+ + P E + V+ L SQF +Y M+L+LL
Sbjct: 771 AGRRGLDNIGTVILMCRDELPEES--DLKHVIVGSATRLESQFRLTYIMILHLL 822
>Medtr8g101340.1 | RNA helicase, ATP-dependent, SK12/DOB1 protein |
HC | chr8:42553280-42543791 | 20130731
Length = 984
Score = 261 bits (667), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 165/483 (34%), Positives = 250/483 (51%), Gaps = 41/483 (8%)
Query: 151 LASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXRGRRIFYTTPL 210
+A Y F +D FQ++++ R SV+VSA TS+GKT I +R+ YT+PL
Sbjct: 76 MAKTYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPL 135
Query: 211 KALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRSG 270
KALSNQK+RE + F D VGL+TGD ++ +A L+MTTEILR MLY+
Sbjct: 136 KALSNQKYRELSQEFTD--VGLMTGDVTLSPNATCLVMTTEILRGMLYR-------GSEV 186
Query: 271 LVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGK 330
L V ++ DE+HY+ D RG VWEE +I+ P ++++ LSAT++N E A WI IH +
Sbjct: 187 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQ 246
Query: 331 -TELVTSSKRPVPLTWH-FSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDDWS 388
+V + RP PL + F + S L L+ ++ + N+L+++ D +
Sbjct: 247 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFRED---NFLKVE--------DTFV 295
Query: 389 RKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWF 448
+++ +G + + F + + + I + I R P I F
Sbjct: 296 KQKLGEGKGGKTN-----GRFGKGGSASGGSD---------IYKIVKMIMERKFQPVIIF 341
Query: 449 IFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVR-----ETAVKGLLQGV 503
FSR+ C+ + + EK VE + + + R E + L +G+
Sbjct: 342 SFSRRECEQHAMSMSKLDFNSQEEKDTVEHVFQNAMLCLNEEDRSLPAIELMLPLLQRGI 401
Query: 504 AAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSGRRPL 563
A HH+G LP+ K +E LFQ+GLVK +FATET A G+NMPA+T V +++ K R +
Sbjct: 402 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYI 461
Query: 564 SSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGMVLN 623
S E +QM+GRAGRRG DE G +++ ++ PLVS F SY +LN
Sbjct: 462 GSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILN 521
Query: 624 LLS 626
L+S
Sbjct: 522 LMS 524
>Medtr7g080730.1 | superkiller viralicidic activity-like protein |
HC | chr7:30721960-30732583 | 20130731
Length = 983
Score = 257 bits (657), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 165/483 (34%), Positives = 245/483 (50%), Gaps = 44/483 (9%)
Query: 150 ELASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXRGRRIFYTTP 209
E A + F +D FQ ++ SV+VSA TS+GKT++ +R+ YT+P
Sbjct: 52 EPAKTFPFTLDPFQSQSITCLENSESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSP 111
Query: 210 LKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRS 269
+KALSNQK+REF+E F D VGL+TGD ++ +A L+MTTEI R+M Y+ V+
Sbjct: 112 IKALSNQKYREFKEEFSD--VGLMTGDVTIDPNASCLVMTTEIWRSMQYKG-SEVTR--- 165
Query: 270 GLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHG 329
V I+ DEVHY+ D RG VWEE ++ PK + + LSATV N E A W+ ++H
Sbjct: 166 ---EVAWIIFDEVHYMRDRERGVVWEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQ 222
Query: 330 K-TELVTSSKRPVPLTWHF--SMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDD 386
+ +V + RP PL + S L ++DEKG K + Q P D
Sbjct: 223 QPCHIVYTDYRPTPLQHYIFPSGSEGLYLVVDEKG-----KFREDSFQKALNALIPAADG 277
Query: 387 WSRKRNAR-KRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPA 445
+K NA+ ++G + ++ES I + I R P
Sbjct: 278 DRKKENAKWQKGLVLGKAAEES---------------------DIFKMVKMIIQRQYDPV 316
Query: 446 IWFIFSRKGCDAAVQYIEDCKLLDECEKSEVE-LALKRFRIQYPDAVRETAVKGLL---- 500
I F FS++ C+ + L + EK +E + + D + V +L
Sbjct: 317 ILFSFSKRECEFLAMQMAKMDLNGDIEKDNIEKIFWCAMDMLSDDDKKLPQVSNMLPLLK 376
Query: 501 QGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSGR 560
+G+ HH+G LP+ K IE LFQ+GL+K +FATET + G+NMPA+T V +++ K
Sbjct: 377 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKF 436
Query: 561 RPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGM 620
R ++S E +QM+GRAGRRGID+ G +L+ ++ + L S F SY M
Sbjct: 437 RWITSGEYIQMSGRAGRRGIDDRGVCILMVDEKMEPSTAKNMVKGAADSLNSAFHLSYNM 496
Query: 621 VLN 623
+LN
Sbjct: 497 ILN 499
>Medtr5g069360.1 | DEAD/DEAH-box RNA helicase | HC |
chr5:29403540-29411488 | 20130731
Length = 967
Score = 244 bits (622), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 164/489 (33%), Positives = 248/489 (50%), Gaps = 68/489 (13%)
Query: 151 LASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXRGRRIFYTTPL 210
+A + F +D+FQ++++ R SV+VSA TS+GKT I R++ YT+PL
Sbjct: 73 MAKTFPFTLDQFQQVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSLRDKRKVLYTSPL 132
Query: 211 KALSNQKFREFRETFGDSYVGLLTGDSAVN-KDAQVLIMTTEILRNMLYQSVGNVSSSRS 269
K+L+NQK+ E R+ F D VGL+TGD + +A+ LIMTTEILR MLY+ S
Sbjct: 133 KSLNNQKYSELRQEFTD--VGLITGDITIYPSEAKCLIMTTEILRGMLYRG--------S 182
Query: 270 GLVN-VDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIH 328
++N VD ++ DE+H + D RG VWEE +I P V+++ LSAT++N E A WI +
Sbjct: 183 EVLNEVDWVIFDEIHCMKDGERGVVWEESIILLPPTVKMVFLSATLSNALEFAEWISTLR 242
Query: 329 GK-TELVTSSKRPVPLTWH-FSMKN-SLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKD 385
+ ++ ++ RP P+ + F + L P++DE M +
Sbjct: 243 KQPCHVICTNFRPTPIQHYVFPIGGRRLYPIVDENEEFMGDNFVMA-------------- 288
Query: 386 DWSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPA 445
E+ F ++ L + N + + +I+ + + P
Sbjct: 289 --------------------ENTFLKQKLGEGN-----KGDMFKIVKMIME---KKFQPI 320
Query: 446 IWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVRE----TAVKGLL- 500
I F FS+K C+ ++ I LD + E E L F + E A+K +L
Sbjct: 321 IVFSFSKKECEHNLKSISK---LDFNTQEEKERVLDIFEMAVLTLNEEDRSLCAIKEVLP 377
Query: 501 ---QGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRID 557
+G+ HH+G LP+ K +E LFQ+GLVK +FATET A G+NMPA+T V SS+ K
Sbjct: 378 HLQRGIGIHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFSSVKKWDG 437
Query: 558 SGRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTAS 617
R + S E +QM+GRAGRRG DE G +++ ++ PLVS F
Sbjct: 438 HEHRYIRSGEYIQMSGRAGRRGKDEHGICIIMIDEQMNKNNLEDIVLGKPAPLVSTFRLR 497
Query: 618 YGMVLNLLS 626
Y +LNL+S
Sbjct: 498 YHSILNLMS 506
>Medtr7g075463.1 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr7:28265418-28275446 | 20130731
Length = 1252
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 203/494 (41%), Gaps = 119/494 (24%)
Query: 146 IDVDELASVYD--------FRIDKFQRLAVQAF----LRGSSVVVSAPTSSGKTLIXXXX 193
+D L SV+D F F L + F ++V+SAPT SGKT++
Sbjct: 1 MDSYSLKSVFDLPQPFQSCFSFRYFNSLQSECFPTCYHSDVNMVISAPTGSGKTVLFELC 60
Query: 194 XXXXXXR-----GRRI--------FYTTPLKALSNQKFREFRETFGDSYVGLL--TGDSA 238
R GR I Y P KAL +K R++ + FG + L TGD+
Sbjct: 61 ILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDWNQKFGPWGICCLELTGDNE 120
Query: 239 ------VNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGT 292
+N +A +++ T E + G S S ++ ++++DEVH L+D RG
Sbjct: 121 SYTPRNIN-EADIILTTPEKFDAV--SRYGIESGGLSFFSDIALLLIDEVHLLND-PRGA 176
Query: 293 VWEEIV-----IYC-PK-------EVQLICLSATVANPDELAGWIGQIHGKTELVTSSKR 339
E IV I C PK +V+ + LSAT+ N ++LA W+
Sbjct: 177 ALEAIVSRIKIISCNPKMKLNPLAQVRFLALSATIPNIEDLAKWL--------------- 221
Query: 340 PVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDDWSRKRNARKRGYR 399
L+P D+ R ++ L + GY P K+D+ ++ + +
Sbjct: 222 -------------LVP--DQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFD 266
Query: 400 --MSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDA 457
M Y +S S K A +R + QI+ P FI SR+ D
Sbjct: 267 ILMQYSKGKSALIFCSTRKGAQEAAQR--LAQIVMNFGQSNP--------FIKSREQQD- 315
Query: 458 AVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAF 517
+ E ++L ++Q +L GV H+ G ++
Sbjct: 316 --------------QLREASMSLSDKQMQ----------SYILYGVGYHNGGLCHKDRSI 351
Query: 518 IEELFQKGLVKVVFATETLAAGINMPARTAVISSLS--KRIDSGRRPLSSNELLQMAGRA 575
+E LF KG ++V+ T TLA GIN+PA T VI S + S + +LQM+GRA
Sbjct: 352 VEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKSLYMEYDRSTILQMSGRA 411
Query: 576 GRRGIDESGHVVLI 589
GR D++G V+++
Sbjct: 412 GRPPFDDTGMVIIM 425
>Medtr7g075463.2 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr7:28265418-28275446 | 20130731
Length = 940
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 203/494 (41%), Gaps = 119/494 (24%)
Query: 146 IDVDELASVYD--------FRIDKFQRLAVQAF----LRGSSVVVSAPTSSGKTLIXXXX 193
+D L SV+D F F L + F ++V+SAPT SGKT++
Sbjct: 1 MDSYSLKSVFDLPQPFQSCFSFRYFNSLQSECFPTCYHSDVNMVISAPTGSGKTVLFELC 60
Query: 194 XXXXXXR-----GRRI--------FYTTPLKALSNQKFREFRETFGDSYVGLL--TGDSA 238
R GR I Y P KAL +K R++ + FG + L TGD+
Sbjct: 61 ILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDWNQKFGPWGICCLELTGDNE 120
Query: 239 ------VNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGT 292
+N +A +++ T E + G S S ++ ++++DEVH L+D RG
Sbjct: 121 SYTPRNIN-EADIILTTPEKFDAV--SRYGIESGGLSFFSDIALLLIDEVHLLND-PRGA 176
Query: 293 VWEEIV-----IYC-PK-------EVQLICLSATVANPDELAGWIGQIHGKTELVTSSKR 339
E IV I C PK +V+ + LSAT+ N ++LA W+
Sbjct: 177 ALEAIVSRIKIISCNPKMKLNPLAQVRFLALSATIPNIEDLAKWL--------------- 221
Query: 340 PVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDDWSRKRNARKRGYR 399
L+P D+ R ++ L + GY P K+D+ ++ + +
Sbjct: 222 -------------LVP--DQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFD 266
Query: 400 --MSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDA 457
M Y +S S K A +R + QI+ P FI SR+ D
Sbjct: 267 ILMQYSKGKSALIFCSTRKGAQEAAQR--LAQIVMNFGQSNP--------FIKSREQQD- 315
Query: 458 AVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAF 517
+ E ++L ++Q +L GV H+ G ++
Sbjct: 316 --------------QLREASMSLSDKQMQ----------SYILYGVGYHNGGLCHKDRSI 351
Query: 518 IEELFQKGLVKVVFATETLAAGINMPARTAVISSLS--KRIDSGRRPLSSNELLQMAGRA 575
+E LF KG ++V+ T TLA GIN+PA T VI S + S + +LQM+GRA
Sbjct: 352 VEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKSLYMEYDRSTILQMSGRA 411
Query: 576 GRRGIDESGHVVLI 589
GR D++G V+++
Sbjct: 412 GRPPFDDTGMVIIM 425
>Medtr7g075463.4 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr7:28265418-28275446 | 20130731
Length = 940
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 203/494 (41%), Gaps = 119/494 (24%)
Query: 146 IDVDELASVYD--------FRIDKFQRLAVQAF----LRGSSVVVSAPTSSGKTLIXXXX 193
+D L SV+D F F L + F ++V+SAPT SGKT++
Sbjct: 1 MDSYSLKSVFDLPQPFQSCFSFRYFNSLQSECFPTCYHSDVNMVISAPTGSGKTVLFELC 60
Query: 194 XXXXXXR-----GRRI--------FYTTPLKALSNQKFREFRETFGDSYVGLL--TGDSA 238
R GR I Y P KAL +K R++ + FG + L TGD+
Sbjct: 61 ILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDWNQKFGPWGICCLELTGDNE 120
Query: 239 ------VNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGT 292
+N +A +++ T E + G S S ++ ++++DEVH L+D RG
Sbjct: 121 SYTPRNIN-EADIILTTPEKFDAV--SRYGIESGGLSFFSDIALLLIDEVHLLND-PRGA 176
Query: 293 VWEEIV-----IYC-PK-------EVQLICLSATVANPDELAGWIGQIHGKTELVTSSKR 339
E IV I C PK +V+ + LSAT+ N ++LA W+
Sbjct: 177 ALEAIVSRIKIISCNPKMKLNPLAQVRFLALSATIPNIEDLAKWL--------------- 221
Query: 340 PVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDDWSRKRNARKRGYR 399
L+P D+ R ++ L + GY P K+D+ ++ + +
Sbjct: 222 -------------LVP--DQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFD 266
Query: 400 --MSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDA 457
M Y +S S K A +R + QI+ P FI SR+ D
Sbjct: 267 ILMQYSKGKSALIFCSTRKGAQEAAQR--LAQIVMNFGQSNP--------FIKSREQQD- 315
Query: 458 AVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAF 517
+ E ++L ++Q +L GV H+ G ++
Sbjct: 316 --------------QLREASMSLSDKQMQ----------SYILYGVGYHNGGLCHKDRSI 351
Query: 518 IEELFQKGLVKVVFATETLAAGINMPARTAVISSLS--KRIDSGRRPLSSNELLQMAGRA 575
+E LF KG ++V+ T TLA GIN+PA T VI S + S + +LQM+GRA
Sbjct: 352 VEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKSLYMEYDRSTILQMSGRA 411
Query: 576 GRRGIDESGHVVLI 589
GR D++G V+++
Sbjct: 412 GRPPFDDTGMVIIM 425
>Medtr7g075463.3 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr7:28265418-28275446 | 20130731
Length = 1050
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 203/494 (41%), Gaps = 119/494 (24%)
Query: 146 IDVDELASVYD--------FRIDKFQRLAVQAF----LRGSSVVVSAPTSSGKTLIXXXX 193
+D L SV+D F F L + F ++V+SAPT SGKT++
Sbjct: 1 MDSYSLKSVFDLPQPFQSCFSFRYFNSLQSECFPTCYHSDVNMVISAPTGSGKTVLFELC 60
Query: 194 XXXXXXR-----GRRI--------FYTTPLKALSNQKFREFRETFGDSYVGLL--TGDSA 238
R GR I Y P KAL +K R++ + FG + L TGD+
Sbjct: 61 ILRLLSRSISSEGRFIHVKGSLKTIYIAPSKALVQEKVRDWNQKFGPWGICCLELTGDNE 120
Query: 239 ------VNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGT 292
+N +A +++ T E + G S S ++ ++++DEVH L+D RG
Sbjct: 121 SYTPRNIN-EADIILTTPEKFDAV--SRYGIESGGLSFFSDIALLLIDEVHLLND-PRGA 176
Query: 293 VWEEIV-----IYC-PK-------EVQLICLSATVANPDELAGWIGQIHGKTELVTSSKR 339
E IV I C PK +V+ + LSAT+ N ++LA W+
Sbjct: 177 ALEAIVSRIKIISCNPKMKLNPLAQVRFLALSATIPNIEDLAKWL--------------- 221
Query: 340 PVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDDWSRKRNARKRGYR 399
L+P D+ R ++ L + GY P K+D+ ++ + +
Sbjct: 222 -------------LVP--DQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFD 266
Query: 400 --MSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDA 457
M Y +S S K A +R + QI+ P FI SR+ D
Sbjct: 267 ILMQYSKGKSALIFCSTRKGAQEAAQR--LAQIVMNFGQSNP--------FIKSREQQD- 315
Query: 458 AVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAF 517
+ E ++L ++Q +L GV H+ G ++
Sbjct: 316 --------------QLREASMSLSDKQMQ----------SYILYGVGYHNGGLCHKDRSI 351
Query: 518 IEELFQKGLVKVVFATETLAAGINMPARTAVISSLS--KRIDSGRRPLSSNELLQMAGRA 575
+E LF KG ++V+ T TLA GIN+PA T VI S + S + +LQM+GRA
Sbjct: 352 VEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKSLYMEYDRSTILQMSGRA 411
Query: 576 GRRGIDESGHVVLI 589
GR D++G V+++
Sbjct: 412 GRPPFDDTGMVIIM 425
>Medtr1g008600.1 | ATP-binding; ATP-dependent helicase; DNA helicase
| HC | chr1:991547-976147 | 20130731
Length = 2177
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 16/156 (10%)
Query: 448 FIFSRKGCDAAVQYIEDCKLL---------DECEKSEVELALKRFRIQYPDAVRETAVKG 498
F SRKGC++ +++ K L + CE +++ A+ R + P + +
Sbjct: 784 FCSSRKGCESTARHV--AKFLKSFTVDINENNCEFADITSAINSLR-KCPAGLDPVLEET 840
Query: 499 LLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDS 558
GVA HHAG + +E ++KGL++V+ AT TLAAG+N+PAR + RI
Sbjct: 841 FPAGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFR--QPRI-- 896
Query: 559 GRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNE 594
G + +QMAGRAGR GID G VLI P E
Sbjct: 897 GCDFIDGTRYMQMAGRAGRTGIDTKGESVLICKPQE 932
>Medtr3g025300.1 | U5 small nuclear ribonucleoprotein helicase | HC
| chr3:7719529-7688875 | 20130731
Length = 2081
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 502 GVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVI--SSLSKRIDSG 559
G+ HHAG L + E LF +GL+KV+ T TLA G+N+PA T VI + + G
Sbjct: 738 GMGIHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQIYDPKAGG 797
Query: 560 RRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYG 619
R L +++Q+ GRAGR D+SG ++I T ++ ++L + L P+ SQF +S
Sbjct: 798 WRDLGMLDVMQIFGRAGRPQFDKSGEGIII-TSHDKLAYYLRLLTSQL-PIESQFISSLK 855
Query: 620 MVLN 623
LN
Sbjct: 856 DNLN 859
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 477 ELALKRFRIQYPDA-VRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATET 535
E AL+ F Q D +R T L G+ HHAG ++ +EELF ++V+ T T
Sbjct: 1552 EEALEMFLSQVSDQNLRHT----LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTST 1607
Query: 536 LAAGINMPARTAVISSLSKRIDSGRR----PLSSNELLQMAGRAGRRGIDESGH-VVLIQ 590
LA G+N+PA +I +R P++ ++LQM GRAGR D+ G V+L+
Sbjct: 1608 LAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPIT--DILQMMGRAGRPQFDQHGKAVILVH 1665
Query: 591 TPNE 594
P +
Sbjct: 1666 EPKK 1669
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 100/241 (41%), Gaps = 34/241 (14%)
Query: 134 LCNEVREFGAEIID-----VDELASVYD---FRIDKFQRLAVQAFL----RGSSVVVSAP 181
L EVR E++D V L ++ ++ F + Q F ++V++ AP
Sbjct: 1250 LLPEVRTSHTELLDLKPLPVSSLGNIDHEGLYKFSHFNPIQTQTFHVLYHTDNNVLLGAP 1309
Query: 182 TSSGKTLIXXXXXXXXXXR--GRRIFYTTPLKALSNQKFREFRE----TFGDSYV---GL 232
T SGKT+ ++ Y PLKA+ ++ ++R+ G V G
Sbjct: 1310 TGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWRKRLVSQLGKKMVEMTGD 1369
Query: 233 LTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGT 292
T D A ++I T E + + SRS + V +I+LDE+H L RG
Sbjct: 1370 YTPDLMALLSANIIISTPE-----KWDGISRNWHSRSYVTKVGLIILDEIHLLG-ADRGP 1423
Query: 293 VWEEIV-------IYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTW 345
+ E IV + V+ + LS +AN +LA W+G S RPVPL
Sbjct: 1424 ILEVIVSRMRYISSQTERPVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEV 1483
Query: 346 H 346
H
Sbjct: 1484 H 1484
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 46/252 (18%)
Query: 144 EIIDVDELASVYDFR----IDKFQ-RLAVQAFLRGSSVVVSAPTSSGKTLIXXXXXXXXX 198
EI ++D+ A FR +++ Q R+ + +++V APT +GKT I
Sbjct: 420 EIRELDDFAQA-AFRGYKSLNRIQSRIYQTVYGTNENILVCAPTGAGKTNIAMISILHEI 478
Query: 199 XRGRR----------IFYTTPLKALSNQKFREFRETFG--DSYVGLLTGDSAVNKD---- 242
+ + I Y P+KAL+ + F + + V LTGD ++K+
Sbjct: 479 GQHFKDGYLHKDKFKIVYVAPMKALAAEVTSTFSQRLSPLNMSVRELTGDMQLSKNELEE 538
Query: 243 AQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCP 302
Q+++ T E + + SS S + V ++++DEVH L+D RG V E +V
Sbjct: 539 TQMIVTTPE-----KWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTL 592
Query: 303 KEVQ-------LICLSATVANPDELAGWIGQIHGKTEL--VTSSKRPVPLTW-------- 345
++V+ ++ LSAT+ N E+A ++ +++ T L SS RPVPL
Sbjct: 593 RQVESSQSMIRIVGLSATLPNYLEVAQFL-RVNPDTGLFFFDSSYRPVPLAQQYIGISEP 651
Query: 346 HFSMKNSLLPLL 357
+F+ +N LL ++
Sbjct: 652 NFAARNELLNVI 663
>Medtr3g025300.2 | U5 small nuclear ribonucleoprotein helicase | HC
| chr3:7719529-7695186 | 20130731
Length = 1734
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 502 GVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVI--SSLSKRIDSG 559
G+ HHAG L + E LF +GL+KV+ T TLA G+N+PA T VI + + G
Sbjct: 738 GMGIHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQIYDPKAGG 797
Query: 560 RRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYG 619
R L +++Q+ GRAGR D+SG ++I T ++ ++L + L P+ SQF +S
Sbjct: 798 WRDLGMLDVMQIFGRAGRPQFDKSGEGIII-TSHDKLAYYLRLLTSQL-PIESQFISSLK 855
Query: 620 MVLN 623
LN
Sbjct: 856 DNLN 859
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 477 ELALKRFRIQYPDA-VRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATET 535
E AL+ F Q D +R T L G+ HHAG ++ +EELF ++V+ T T
Sbjct: 1552 EEALEMFLSQVSDQNLRHT----LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTST 1607
Query: 536 LAAGINMPARTAVISSLSKRIDSGRR----PLSSNELLQMAGRAGRRGIDESGH-VVLIQ 590
LA G+N+PA +I +R P++ ++LQM GRAGR D+ G V+L+
Sbjct: 1608 LAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPIT--DILQMMGRAGRPQFDQHGKAVILVH 1665
Query: 591 TPNE 594
P +
Sbjct: 1666 EPKK 1669
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 100/241 (41%), Gaps = 34/241 (14%)
Query: 134 LCNEVREFGAEIID-----VDELASVYD---FRIDKFQRLAVQAFL----RGSSVVVSAP 181
L EVR E++D V L ++ ++ F + Q F ++V++ AP
Sbjct: 1250 LLPEVRTSHTELLDLKPLPVSSLGNIDHEGLYKFSHFNPIQTQTFHVLYHTDNNVLLGAP 1309
Query: 182 TSSGKTLIXXXXXXXXXXR--GRRIFYTTPLKALSNQKFREFRE----TFGDSYV---GL 232
T SGKT+ ++ Y PLKA+ ++ ++R+ G V G
Sbjct: 1310 TGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWRKRLVSQLGKKMVEMTGD 1369
Query: 233 LTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGT 292
T D A ++I T E + + SRS + V +I+LDE+H L RG
Sbjct: 1370 YTPDLMALLSANIIISTPE-----KWDGISRNWHSRSYVTKVGLIILDEIHLLG-ADRGP 1423
Query: 293 VWEEIV-------IYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTW 345
+ E IV + V+ + LS +AN +LA W+G S RPVPL
Sbjct: 1424 ILEVIVSRMRYISSQTERPVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEV 1483
Query: 346 H 346
H
Sbjct: 1484 H 1484
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 46/252 (18%)
Query: 144 EIIDVDELASVYDFR----IDKFQ-RLAVQAFLRGSSVVVSAPTSSGKTLIXXXXXXXXX 198
EI ++D+ A FR +++ Q R+ + +++V APT +GKT I
Sbjct: 420 EIRELDDFAQA-AFRGYKSLNRIQSRIYQTVYGTNENILVCAPTGAGKTNIAMISILHEI 478
Query: 199 XRGRR----------IFYTTPLKALSNQKFREFRETFG--DSYVGLLTGDSAVNKD---- 242
+ + I Y P+KAL+ + F + + V LTGD ++K+
Sbjct: 479 GQHFKDGYLHKDKFKIVYVAPMKALAAEVTSTFSQRLSPLNMSVRELTGDMQLSKNELEE 538
Query: 243 AQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCP 302
Q+++ T E + + SS S + V ++++DEVH L+D RG V E +V
Sbjct: 539 TQMIVTTPE-----KWDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTL 592
Query: 303 KEVQ-------LICLSATVANPDELAGWIGQIHGKTEL--VTSSKRPVPLTW-------- 345
++V+ ++ LSAT+ N E+A ++ +++ T L SS RPVPL
Sbjct: 593 RQVESSQSMIRIVGLSATLPNYLEVAQFL-RVNPDTGLFFFDSSYRPVPLAQQYIGISEP 651
Query: 346 HFSMKNSLLPLL 357
+F+ +N LL ++
Sbjct: 652 NFAARNELLNVI 663
>Medtr4g011450.1 | U5 small nuclear ribonucleoprotein 200 kDa helicase
| HC | chr4:2793467-2800896 | 20130731
Length = 2099
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 156 DFRIDKFQRLAVQAFL----RGSSVVVSAPTSSGKTLIXXXXXXXXXXRGR----RIFYT 207
DF+ F + Q F + +V+APT SGKT+ +G R+ Y
Sbjct: 1322 DFK--HFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILRNHKKGSDSVMRVVYV 1379
Query: 208 TPLKALSNQKFREFRETFGDSY---VGLLTGDSAVN----KDAQVLIMTTEILRNMLYQS 260
P++AL+ +++R++ + FG V LTG++ + + Q++I T E + +
Sbjct: 1380 APIEALAKERYRDWEKKFGGGLKFAVVELTGETTTDLKLLEKGQIIISTPE-----KWDA 1434
Query: 261 VGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVI---YCPKEVQ----LICLSAT 313
+ R + V + ++DE+H + RG+V E IV Y +V+ + LS +
Sbjct: 1435 LSRRWKQRKHVQQVSLFIIDELHLIGG-QRGSVLEVIVSRMKYIANQVENKIRFVALSTS 1493
Query: 314 VANPDELAGWIGQIHGKTELVTSSKRPVPLTWHF 347
VAN +L WIG + RPVPL H
Sbjct: 1494 VANAKDLGDWIGATSHGLFNFSPVVRPVPLEIHI 1527
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 448 FIFSRKGCDAAVQYIEDCKLLDECEKSEV--ELALKRFRIQYPDAVRETAVKGLL-QGVA 504
F+ SRK + I D L ++ + + A + + D V+ +K LL G A
Sbjct: 723 FVHSRKETAKTARAIRDTALANDTLGRFLKEDSASREILHSHTDLVKSNDLKDLLPYGFA 782
Query: 505 AHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSGR---R 561
HHAG + +E+LF G V+V+ +T TLA G+N+PA T +I +K + R
Sbjct: 783 IHHAGMTRTDRQLVEDLFASGHVQVLVSTATLAWGVNLPAHTVIIKG-TKIYNPERGAWT 841
Query: 562 PLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGMV 621
LS +++QM GRAGR D G +++ T + + ++ L P+ SQF +
Sbjct: 842 ELSPLDVMQMLGRAGRPQYDSCGMGIVV-TGHSELQYYLSLMNQQL-PIESQFISKLADQ 899
Query: 622 LN 623
LN
Sbjct: 900 LN 901
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 42/210 (20%)
Query: 169 AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXRGR------------RIFYTTPLKALSNQ 216
A + ++++ APT +GKT + R R +I Y P+KAL +
Sbjct: 490 ALFKSDNLLLCAPTGAGKTNVAVLTILQEIARHRNPGDGSIDHSAYKIVYVAPMKALVTE 549
Query: 217 -------KFREFRETFGDSYVGLLTGDSAVNK----DAQVLIMTTEILRNMLYQSVGNVS 265
+ +E+ D V L+GD ++ + + Q+++ T E + + S
Sbjct: 550 IVGNLSNRLQEY-----DVKVRELSGDQSLTQKQMEETQIIVTTPE-----KWDIITRKS 599
Query: 266 SSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQ-------LICLSATVANPD 318
R V ++++DE+H L D +RG V E I+ ++++ L+ LSAT+ N +
Sbjct: 600 GDRIYTQLVKLLIIDEIHLLHD-NRGPVLESIIARTVRQIETTKDYIRLVGLSATLPNFE 658
Query: 319 ELAGWIGQIHGKTEL-VTSSKRPVPLTWHF 347
++A ++ H K +S RPVPL+ F
Sbjct: 659 DVARFLRVDHNKGLFYFDNSYRPVPLSQQF 688
>Medtr4g008780.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | HC | chr4:1682714-1679988 | 20130731
Length = 890
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 30/213 (14%)
Query: 156 DFRIDKFQRLAVQAFL----RGSSVVVSAPTSSGKTLIXXXXXXXXXXRGR----RIFYT 207
DF+ F + Q F + +V+APT SGKT+ +G R+ Y
Sbjct: 84 DFK--HFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILRNHQKGSDSVMRVVYV 141
Query: 208 TPLKALSNQKFREFRETFGDSY---VGLLTGDSAVN----KDAQVLIMTTEILRNMLYQS 260
P++AL+ +++R++ + FG V LTG++ + + Q++I T E + +
Sbjct: 142 APIEALAKERYRDWEKKFGGGLKLAVVELTGETTTDLKLLEKGQIIISTPE-----KWDA 196
Query: 261 VGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVI---YCPKEVQ----LICLSAT 313
+ R + V + ++DE+H + RG+V E IV Y +V+ + LS +
Sbjct: 197 LSRRWKQRKHVQQVSLFIIDELHLIGG-QRGSVLEVIVSRMKYIANQVENKIRFVALSTS 255
Query: 314 VANPDELAGWIGQIHGKTELVTSSKRPVPLTWH 346
VAN +L WIG + RPVPL H
Sbjct: 256 VANAKDLGDWIGATSHGLFNFSPVVRPVPLEIH 288
>Medtr2g064740.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | HC | chr2:29260637-29270804 | 20130731
Length = 2188
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 7/181 (3%)
Query: 448 FIFSRKGCDAAVQYIEDCKLLDECEKSEV--ELALKRFRIQYPDAVRETAVKGLL-QGVA 504
F+ SRK + I D L D+ + + A + + D V+ + +K LL G A
Sbjct: 768 FVHSRKETAKTARAIRDAALADDTLGRFLKEDSASREILHTHTDLVKSSDLKDLLPYGFA 827
Query: 505 AHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVI--SSLSKRIDSGRRP 562
HHAG + +E+LF G +V+ +T TLA G+N+PA T +I + +
Sbjct: 828 IHHAGMTRTDRQLVEDLFADGHAQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 887
Query: 563 LSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGMVL 622
LS +++QM GRAGR D G +++ T + + ++ L P+ SQF + L
Sbjct: 888 LSPLDVMQMLGRAGRPQYDSYGEGIIL-TGHSELQYYLSLMNQQL-PIESQFISKLADQL 945
Query: 623 N 623
N
Sbjct: 946 N 946
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 30/214 (14%)
Query: 156 DFRIDKFQRLAVQAFL----RGSSVVVSAPTSSGKTLIXXXXXXXXXXR----GRRIFYT 207
DF+ F + Q F +V+V+APT SGKT+ + R+ Y
Sbjct: 1367 DFK--HFNPVQTQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILRNHQKLPDSVMRVVYI 1424
Query: 208 TPLKALSNQKFREFRETFGDSY---VGLLTGDSAVN----KDAQVLIMTTEILRNMLYQS 260
P++AL+ +++R++ + FG V LTG++A + + QV+I T E + +
Sbjct: 1425 APVEALAKERYRDWEKKFGGGLKLKVVELTGETATDLKLLEKGQVIISTPEK-----WDA 1479
Query: 261 VGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVI-------YCPKEVQLICLSAT 313
+ R + V + ++DE+H + G V E IV +++++ LS +
Sbjct: 1480 LSRRWKQRKHVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYISSQLENKIRIVALSTS 1538
Query: 314 VANPDELAGWIGQIHGKTELVTSSKRPVPLTWHF 347
+AN +L WIG RPVPL H
Sbjct: 1539 LANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHI 1572
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 169 AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXRGR------------RIFYTTPLKALSNQ 216
A + ++++ APT +GKT + R R +I Y P+KAL +
Sbjct: 535 ALFKPDNLLLCAPTGAGKTNVAVLTILQQIARHRNTDDGSIDHSAYKIVYVAPMKALVAE 594
Query: 217 KFREFRETFGDSYVGL--LTGDSAVNK----DAQVLIMTTEILRNMLYQSVGNVSSSRSG 270
D V + L+GD ++ + + Q+++ T E + + S R+
Sbjct: 595 VVGNLSNRLQDYNVTVRELSGDQSLTRQQIEETQIIVTTPEK-----WDIITRKSGDRTY 649
Query: 271 LVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQ-------LICLSATVANPDELAGW 323
V ++++DE+H L D +RG V E IV ++++ L+ LSAT+ N +++A +
Sbjct: 650 TQLVKLVIIDEIHLLHD-NRGPVLESIVARTVRQIETSKDYIRLVGLSATLPNYEDVALF 708
Query: 324 IG-QIHGKTELVTSSKRPVPLTWHF 347
+ ++ +S RPVPL+ +
Sbjct: 709 LRVDLNKGLFYFDNSYRPVPLSQQY 733
>Medtr4g011450.2 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | HC | chr4:2793467-2800740 | 20130731
Length = 2072
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 448 FIFSRKGCDAAVQYIEDCKLLDECEKSEV--ELALKRFRIQYPDAVRETAVKGLL-QGVA 504
F+ SRK + I D L ++ + + A + + D V+ +K LL G A
Sbjct: 723 FVHSRKETAKTARAIRDTALANDTLGRFLKEDSASREILHSHTDLVKSNDLKDLLPYGFA 782
Query: 505 AHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSGRR--- 561
HHAG + +E+LF G V+V+ +T TLA G+N+PA T +I +I + R
Sbjct: 783 IHHAGMTRTDRQLVEDLFASGHVQVLVSTATLAWGVNLPAHTVIIK--GTKIYNPERGAW 840
Query: 562 -PLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGM 620
LS +++QM GRAGR D G +++ +E + L P+ SQF +
Sbjct: 841 TELSPLDVMQMLGRAGRPQYDSCGMGIVVTGHSE--LQYYLSLMNQQLPIESQFISKLAD 898
Query: 621 VLN 623
LN
Sbjct: 899 QLN 901
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 42/210 (20%)
Query: 169 AFLRGSSVVVSAPTSSGKTLIXXXXXXXXXXRGR------------RIFYTTPLKALSNQ 216
A + ++++ APT +GKT + R R +I Y P+KAL +
Sbjct: 490 ALFKSDNLLLCAPTGAGKTNVAVLTILQEIARHRNPGDGSIDHSAYKIVYVAPMKALVTE 549
Query: 217 -------KFREFRETFGDSYVGLLTGDSAVNK----DAQVLIMTTEILRNMLYQSVGNVS 265
+ +E+ D V L+GD ++ + + Q+++ T E + + S
Sbjct: 550 IVGNLSNRLQEY-----DVKVRELSGDQSLTQKQMEETQIIVTTPE-----KWDIITRKS 599
Query: 266 SSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQ-------LICLSATVANPD 318
R V ++++DE+H L D +RG V E I+ ++++ L+ LSAT+ N +
Sbjct: 600 GDRIYTQLVKLLIIDEIHLLHD-NRGPVLESIIARTVRQIETTKDYIRLVGLSATLPNFE 658
Query: 319 ELAGWIGQIHGKTEL-VTSSKRPVPLTWHF 347
++A ++ H K +S RPVPL+ F
Sbjct: 659 DVARFLRVDHNKGLFYFDNSYRPVPLSQQF 688
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 20/155 (12%)
Query: 207 TTPLKALSNQKFREFRETFGDSY---VGLLTGDSAVN----KDAQVLIMTTEILRNMLYQ 259
+ P++AL+ +++R++ + FG V LTG++ + + Q++I T E +
Sbjct: 1352 SAPIEALAKERYRDWEKKFGGGLKFAVVELTGETTTDLKLLEKGQIIISTPE-----KWD 1406
Query: 260 SVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVI---YCPKEVQ----LICLSA 312
++ R + V + ++DE+H + RG+V E IV Y +V+ + LS
Sbjct: 1407 ALSRRWKQRKHVQQVSLFIIDELHLIGG-QRGSVLEVIVSRMKYIANQVENKIRFVALST 1465
Query: 313 TVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHF 347
+VAN +L WIG + RPVPL H
Sbjct: 1466 SVANAKDLGDWIGATSHGLFNFSPVVRPVPLEIHI 1500
>Medtr2g030905.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase | LC | chr2:11697696-11700581 | 20130731
Length = 961
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 36/237 (15%)
Query: 137 EVREFGAEIIDVDELASV-----------YDFRIDKFQRLAVQAFL----RGSSVVVSAP 181
E AE DV L V Y + +F ++ AF +V ++AP
Sbjct: 118 EYHPLPAEAFDVQSLLPVASLGNTSYEALYQNQFKQFNKIQTHAFQVLYKSDDNVFLAAP 177
Query: 182 TSSGKTLIXXXXXXXXXXRGR-RIFYTTPLKALSNQKFREFRETFG---DSYVGLLTGDS 237
T SGKT +G R+ Y P++A++ ++RE++ FG +S + LTG++
Sbjct: 178 TGSGKTTCAEIAILRNHQKGHMRVVYIAPIRAIAQNQYREWKTKFGGGLNSMIVELTGEN 237
Query: 238 AVN----KDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTV 293
+ ++ Q++I T +I + ++ + V +++LD++H++ G +
Sbjct: 238 ETDLKLLEEGQIIITTPQI-----WDALSRQWKQIIQIQQVPLLILDDLHFIGG-PEGHI 291
Query: 294 WEEIVIYCP-------KEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPL 343
E I++ K+++++ LSA + N ++ WIG + + R VPL
Sbjct: 292 LERIIVRMKQISTRVGKKMRIVALSAPITNGKDIGEWIGATSHSLFNFSPTARHVPL 348
>Medtr4g008770.1 | U5 small nuclear ribonucleoprotein 200 kDa
helicase, putative | LC | chr4:1676751-1672827 |
20130731
Length = 666
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 156 DFRIDKFQRLAVQAFL----RGSSVVVSAPTSSGKTLIXXXXXXXXXXRGR----RIFYT 207
DF+ F + Q F + +V+APT SGKT+ +G R+ Y
Sbjct: 456 DFK--HFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILRNHKKGSDSVMRVVYE 513
Query: 208 TPLKALSNQKFREFRETFGDSY---VGLLTGDSAVN----KDAQVLIMTTEILRNMLYQS 260
P++AL+ +++R++ + FG V LTG++ + + Q++I T E + +
Sbjct: 514 APIEALAKERYRDWEKKFGGGLKLAVVELTGETTTDLKLLEKGQIIISTPE-----KWDA 568
Query: 261 VGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVI---YCPKEVQ----LICLSAT 313
+ R + V + ++DE+H + RGTV E IV Y +V+ + LS +
Sbjct: 569 LSRRWKQRKHVQQVSLFIIDELHLIGG-QRGTVLEVIVSRMKYIANQVENKIRFVALSTS 627
Query: 314 VANPDELAGWI 324
VAN +L WI
Sbjct: 628 VANAKDLGDWI 638
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 156 DFRIDKFQRLAVQAFL----RGSSVVVSAPTSSGKTLIXXXXXXXXXXRGR----RIFYT 207
DF+ F + Q F + +V+APT SGKT+ +G R+ Y
Sbjct: 144 DFK--HFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILRNHKKGSDSVMRVVYE 201
Query: 208 TPLKALSNQKFREFRETFGDSY---VGLLTGDSAVN----KDAQVLIMTTEILRNMLYQS 260
P++AL+ +++R++ + FG V LTG++ + + Q++I T E + +
Sbjct: 202 APIEALAKERYRDWEKKFGGGLKLAVVELTGETTTDLKLLEKGQIIISTPE-----KWDA 256
Query: 261 VGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVI---YCPKEVQ----LICLSAT 313
+ R + V + ++DE+H + RG V E IV Y +V+ + LS +
Sbjct: 257 LSRRWKQRKHVQQVSLFIIDELHLIGG-QRGPVLEVIVSRMKYIANQVENKIRFVALSTS 315
Query: 314 VANPDELAGWI 324
VAN +L WI
Sbjct: 316 VANAKDLGDWI 326
>Medtr1g007510.1 | DNA polymerase theta-like protein | HC |
chr1:413021-417854 | 20130731
Length = 912
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 448 FIFSRKGCDAAVQYIEDCKLL---------DECEKSEVELALKRFRIQYPDAVRETAVKG 498
F SRKGC++ +++ K L + CE +++ A+ R + P + +
Sbjct: 38 FCSSRKGCESTGRHVA--KFLKSFTVDINENNCEFADITSAINSLR-KCPAGLDPVLEET 94
Query: 499 LLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDS 558
GVA HHAG + +E ++K L++V+ AT TLAAG+N PAR + RI
Sbjct: 95 FPAGVAFHHAGLTVEEREIVETCYRKDLLRVLTATSTLAAGVNPPARRVIFR--QPRI-- 150
Query: 559 GRRPLSSNELLQMAGR 574
G + +QMAGR
Sbjct: 151 GCDFIDGTRYMQMAGR 166
>Medtr0312s0040.1 | DNA polymerase theta-like protein | HC |
scaffold0312:17550-12717 | 20130731
Length = 880
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 448 FIFSRKGCDAAVQYIEDCKLL---------DECEKSEVELALKRFRIQYPDAVRETAVKG 498
F SRKGC++ +++ K L + CE +++ A+ R + P + +
Sbjct: 38 FCSSRKGCESTGRHVA--KFLKSFTVDINENNCEFADITSAINSLR-KCPAGLDPVLEET 94
Query: 499 LLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVI 549
GVA HHAG + +E ++K L++V+ AT TLAAG+N PAR VI
Sbjct: 95 FPAGVAFHHAGLTVEEREIVETCYRKDLLRVLTATSTLAAGVNPPARRVVI 145