Miyakogusa Predicted Gene

Lj2g3v1277770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277770.1 tr|A9RZT4|A9RZT4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_122100,38.17,0.000000000000001,Translational machinery
components,NULL; Ribosomal_L18p,Ribosomal protein L18/L5; no
description,NUL,CUFF.36666.1
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g041290.1 | 50S ribosomal L18-like protein | HC | chr5:181...   259   1e-69
Medtr5g041280.1 | 50S ribosomal protein L18, putative | HC | chr...    80   6e-16
Medtr2g044920.1 | 50S ribosomal protein L18 | HC | chr2:19537100...    75   4e-14
Medtr2g044920.2 | 50S ribosomal protein L18 | HC | chr2:19537103...    51   4e-07

>Medtr5g041290.1 | 50S ribosomal L18-like protein | HC |
           chr5:18145614-18143638 | 20130731
          Length = 166

 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/156 (78%), Positives = 135/156 (86%)

Query: 9   LHFKSSSVFGINPKSFIYFQGQSRCLIKKPLVVEARANTRTESPKIRNRRMQKKFNGTAR 68
             F +SS FG+ PK FI FQ Q+  LIKK LV +A+AN R ES KIRNR+MQKKFNGTA 
Sbjct: 11  FQFNTSSFFGVIPKPFISFQPQTTSLIKKSLVTKAKANARKESAKIRNRKMQKKFNGTAT 70

Query: 69  HPRLSVFCSDKQLYAMLVDDKNKKCLFYGSTLHKSFRENPPCSTVEAAQRVGEALVKACT 128
           HPRLSVFCSDKQLYAMLVDD+NKKCLFYGSTL K FRENPPCST+EAAQRVGEALVKAC 
Sbjct: 71  HPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKLFRENPPCSTIEAAQRVGEALVKACV 130

Query: 129 DLKINEISSYDRNGFGRGQRLDAFEIAISSYGFLQR 164
           DL INEISSYDRNGFGRG+RL+AFEIAIS++GFL R
Sbjct: 131 DLNINEISSYDRNGFGRGERLNAFEIAISNFGFLPR 166


>Medtr5g041280.1 | 50S ribosomal protein L18, putative | HC |
           chr5:18143510-18142914 | 20130731
          Length = 69

 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 46/66 (69%), Gaps = 7/66 (10%)

Query: 87  DDKNKKCLFYGSTLHKSFRENPPCSTVEAAQRVGEALVKACTDLKINEISSYDRNGFGRG 146
           DD+NKKCLFYG  L++SF ENP C TV+ AQR GE LVKAC DL         RN FGRG
Sbjct: 11  DDQNKKCLFYGRRLYESFGENPSCRTVDDAQRAGEVLVKACFDLNT-------RNDFGRG 63

Query: 147 QRLDAF 152
           + L+AF
Sbjct: 64  ESLNAF 69


>Medtr2g044920.1 | 50S ribosomal protein L18 | HC |
           chr2:19537100-19533306 | 20130731
          Length = 166

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 43  ARANTRTESPKIRNRRMQKKFNGTARHPRLSVFCSDKQLYAMLVDDKNKKCLFYGSTLHK 102
            +A TR E    R+ R++KK  GT   PRLSVF S+K L+  ++DD     L   ST+ K
Sbjct: 44  VQATTRREDRIARHVRLRKKIEGTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQK 103

Query: 103 SFREN---PPCSTVEAAQRVGEALVKACTDLKINEISSYDRNGFGRGQRLDAFEIAISSY 159
           +  E        T+E A+RVGE + K+C +  I ++  +DR G+    R+ A   A   +
Sbjct: 104 AIAEELNFTSGPTIEVAKRVGEIIAKSCLEKGITKV-VFDRGGYPYHGRVKAIADAAREH 162

Query: 160 GF 161
           G 
Sbjct: 163 GL 164


>Medtr2g044920.2 | 50S ribosomal protein L18 | HC |
           chr2:19537103-19533306 | 20130731
          Length = 136

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 43  ARANTRTESPKIRNRRMQKKFNGTARHPRLSVFCSDKQLYAMLVDDKNKKCLFYGSTLHK 102
            +A TR E    R+ R++KK  GT   PRLSVF S+K L+  ++DD     L   ST+ K
Sbjct: 44  VQATTRREDRIARHVRLRKKIEGTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQK 103

Query: 103 SFRE 106
           +  E
Sbjct: 104 AIAE 107