Miyakogusa Predicted Gene

Lj2g3v1277660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277660.1 tr|Q259U2|Q259U2_ORYSA H0913C04.2 protein
OS=Oryza sativa GN=H0913C04.2 PE=3 SV=1,51.35,3e-19,A_tha_TIGR01569:
plant integral membrane protein T,Uncharacterised protein family
UPF0497, trans-mem,CUFF.36657.1
         (186 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g041900.1 | casparian strip membrane protein | HC | chr5:1...   200   6e-52
Medtr4g081880.1 | casparian strip membrane protein | HC | chr4:3...   182   1e-46
Medtr7g011090.1 | casparian strip membrane protein | HC | chr7:2...   149   1e-36
Medtr1g058560.1 | casparian strip membrane protein | HC | chr1:2...   128   3e-30
Medtr1g058540.1 | casparian strip membrane protein | HC | chr1:2...   126   1e-29
Medtr2g086740.1 | plant integral membrane protein | HC | chr2:36...   124   7e-29
Medtr1g058570.1 | casparian strip membrane protein | HC | chr1:2...   117   4e-27
Medtr2g086740.2 | plant integral membrane protein | HC | chr2:36...    89   2e-18
Medtr4g118810.1 | plant integral membrane protein | HC | chr4:49...    57   7e-09
Medtr7g108130.1 | plant integral membrane protein | HC | chr7:43...    54   9e-08
Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC | chr8:37100...    54   1e-07
Medtr0004s0210.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...    53   1e-07
Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC | scaffold0...    50   1e-06

>Medtr5g041900.1 | casparian strip membrane protein | HC |
           chr5:18399261-18401571 | 20130731
          Length = 186

 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 121/166 (72%)

Query: 1   MKGGSIEIGEVSKGASQRKGMKRGLSIMDFILRIXXXXXXXXXXXXXXXXEESLPFVTNF 60
           MKGGSIE+GEVSK AS  KG+KRGLSIMDFILRI                +E LPF T+F
Sbjct: 1   MKGGSIELGEVSKNASTNKGVKRGLSIMDFILRIIAGVATLASAVAMGTTDERLPFATSF 60

Query: 61  MQFRAEYDDLPSFVFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMXXX 120
           +QFRAEYDDLPSFVFFVLANS+VCGYL LSLILS+ HIVRS+AVKSR+LLIV D VM   
Sbjct: 61  VQFRAEYDDLPSFVFFVLANSIVCGYLALSLILSILHIVRSTAVKSRILLIVLDMVMMGL 120

Query: 121 XXXXXXXXXXXXXXXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
                          H GN++ANWFPICQQ+N++C++ SGS++GSY
Sbjct: 121 LAAAASAAASIVYIAHYGNTQANWFPICQQYNSFCERISGSLIGSY 166


>Medtr4g081880.1 | casparian strip membrane protein | HC |
           chr4:31869526-31871135 | 20130731
          Length = 189

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 111/167 (66%), Gaps = 1/167 (0%)

Query: 1   MKGGSIEIGEVSKGASQ-RKGMKRGLSIMDFILRIXXXXXXXXXXXXXXXXEESLPFVTN 59
           MK  +IE GE+SKGAS  RKGMKRGLSIMDFILRI                ++++PF T 
Sbjct: 1   MKVSTIESGEISKGASSPRKGMKRGLSIMDFILRIFAAMSTLGSALSMGTAKQTMPFATR 60

Query: 60  FMQFRAEYDDLPSFVFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMXX 119
           F++F+  + DLP+F+FFV ANS+VCGYL LSL+LS FHIVR+ +VKSR+LL+  DTVM  
Sbjct: 61  FVRFKVSFHDLPTFLFFVTANSIVCGYLALSLVLSFFHIVRTISVKSRILLVFLDTVMFG 120

Query: 120 XXXXXXXXXXXXXXXXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
                           H GN  ANWFP CQQ+N++C + SGS+VGS+
Sbjct: 121 LLTSGASAAAAIVYVAHYGNPSANWFPFCQQYNSFCGRISGSLVGSF 167


>Medtr7g011090.1 | casparian strip membrane protein | HC |
           chr7:2905231-2907425 | 20130731
          Length = 186

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 106/165 (64%), Gaps = 1/165 (0%)

Query: 2   KGGSIEIGEVSKGASQRKGMKRGLSIMDFILRIXXXXXXXXXXXXXXXXEESLPFVTNFM 61
           K   +E+GE  K ++Q+  MKRG+SI+DFILR+                +ESLPF T F+
Sbjct: 3   KSTYVELGE-EKTSNQKGNMKRGVSILDFILRLIAIVATLASAIAMGTTDESLPFFTQFV 61

Query: 62  QFRAEYDDLPSFVFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMXXXX 121
           +FRA YDDLP+  FFV+A+++V GYL+LSL LS+ HI+RSSA  +RV+ I+ DTVM    
Sbjct: 62  RFRANYDDLPTLRFFVVASAIVSGYLILSLPLSILHIIRSSAGMTRVIFIILDTVMLGLL 121

Query: 122 XXXXXXXXXXXXXXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
                         H GN KANWF  CQQ+N++C++ SGS++GS+
Sbjct: 122 TAGSSAAASIVYLAHKGNRKANWFAFCQQYNSFCERISGSLIGSF 166


>Medtr1g058560.1 | casparian strip membrane protein | HC |
           chr1:25810191-25808737 | 20130731
          Length = 195

 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 88/171 (51%), Gaps = 10/171 (5%)

Query: 6   IEIGEVSK----------GASQRKGMKRGLSIMDFILRIXXXXXXXXXXXXXXXXEESLP 55
           I+I E SK            ++  G K+G++IMDFILR+                ++SLP
Sbjct: 5   IDIQESSKDTKGKAVLVAAPARPGGWKKGIAIMDFILRLGAIAAALAAAASMGTSDQSLP 64

Query: 56  FVTNFMQFRAEYDDLPSFVFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDT 115
           F T F QF A YD  P+F FF++A ++V GYLVLSL  S+  I+R  A   R+ LI+ DT
Sbjct: 65  FFTQFFQFEASYDSFPAFQFFLIAMAIVAGYLVLSLPFSIVAIIRPHATGPRLFLIILDT 124

Query: 116 VMXXXXXXXXXXXXXXXXXXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
           V                   HNGN   NW  IC QF ++C Q SG+VV S+
Sbjct: 125 VFLTLATASAASAASIVYLAHNGNQDTNWLAICNQFGDFCAQTSGAVVASF 175


>Medtr1g058540.1 | casparian strip membrane protein | HC |
           chr1:25798149-25796910 | 20130731
          Length = 196

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 1/154 (0%)

Query: 14  GASQRKG-MKRGLSIMDFILRIXXXXXXXXXXXXXXXXEESLPFVTNFMQFRAEYDDLPS 72
           GA  R G  K+G++IMDF+LR+                ++ LPF T F+QF A YD   +
Sbjct: 23  GAPARPGGWKKGIAIMDFVLRLGAIAASLAATITMATSDQILPFFTQFLQFEASYDSFST 82

Query: 73  FVFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMXXXXXXXXXXXXXXX 132
           F FFV+A + V GYLVLSL  S+  I+R  A   R+ LI+ DTV                
Sbjct: 83  FQFFVIAMAFVGGYLVLSLPFSIVTIIRPHAPGPRLFLIILDTVFLTLATASGASAAAMV 142

Query: 133 XXXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
              HNGN  +NW  IC QF ++C Q SG+VV S+
Sbjct: 143 SLAHNGNQDSNWLAICNQFGDFCAQTSGAVVASF 176


>Medtr2g086740.1 | plant integral membrane protein | HC |
           chr2:36464677-36466663 | 20130731
          Length = 220

 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 84/150 (56%)

Query: 17  QRKGMKRGLSIMDFILRIXXXXXXXXXXXXXXXXEESLPFVTNFMQFRAEYDDLPSFVFF 76
           Q+ GMK+G++I+DFILR+                E+ LPF T F+QF A++DD P F FF
Sbjct: 51  QKGGMKKGIAILDFILRLGAIGAALGAAVIMGTNEQILPFFTQFLQFHAQWDDFPMFKFF 110

Query: 77  VLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMXXXXXXXXXXXXXXXXXXH 136
           V+AN    G+L+LSL  S+  IVR  A   R LL++ D V+                  H
Sbjct: 111 VVANGAAAGFLILSLPFSIVCIVRPLAAGPRFLLVIVDLVLMALVVAAASSAAAVVYLAH 170

Query: 137 NGNSKANWFPICQQFNNYCQQASGSVVGSY 166
           NG+  ANW  ICQQF ++CQ +S +VV S+
Sbjct: 171 NGSQDANWNAICQQFTDFCQGSSLAVVASF 200


>Medtr1g058570.1 | casparian strip membrane protein | HC |
           chr1:25816955-25815748 | 20130731
          Length = 194

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 78/153 (50%)

Query: 14  GASQRKGMKRGLSIMDFILRIXXXXXXXXXXXXXXXXEESLPFVTNFMQFRAEYDDLPSF 73
             ++  G K+G +IMDFILR+                +++LPF T F QF A YD   +F
Sbjct: 22  APARPGGWKKGTAIMDFILRLGAIAAAIAAAASMGTSDQTLPFFTQFFQFEASYDSFTTF 81

Query: 74  VFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMXXXXXXXXXXXXXXXX 133
            FFV++ ++   YLVLSL  S+  I+R  A   R+ LI+ DTV                 
Sbjct: 82  QFFVISMAIAASYLVLSLPFSIVAIIRPHAPGPRLFLIILDTVFLTLATSSAAAAASIVY 141

Query: 134 XXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
             HNGN   NW  IC QF ++C Q SG+VV S+
Sbjct: 142 LAHNGNQDTNWLAICNQFGDFCAQTSGAVVASF 174


>Medtr2g086740.2 | plant integral membrane protein | HC |
           chr2:36464677-36466663 | 20130731
          Length = 155

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 60/100 (60%)

Query: 17  QRKGMKRGLSIMDFILRIXXXXXXXXXXXXXXXXEESLPFVTNFMQFRAEYDDLPSFVFF 76
           Q+ GMK+G++I+DFILR+                E+ LPF T F+QF A++DD P F FF
Sbjct: 51  QKGGMKKGIAILDFILRLGAIGAALGAAVIMGTNEQILPFFTQFLQFHAQWDDFPMFKFF 110

Query: 77  VLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTV 116
           V+AN    G+L+LSL  S+  IVR  A   R LL++ D V
Sbjct: 111 VVANGAAAGFLILSLPFSIVCIVRPLAAGPRFLLVIVDLV 150


>Medtr4g118810.1 | plant integral membrane protein | HC |
           chr4:49234116-49235835 | 20130731
          Length = 200

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 52  ESLPFVTNFMQFRAEYDDLPSFVFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLI 111
           +SLP +   +   A++  L +FV+F++AN++ C Y  +S++L++ +  +S  V    L+ 
Sbjct: 67  DSLPPLN--VAVSAKWHYLSAFVYFLVANAIACTYGAISMLLTLLNRGKSK-VFWGTLIT 123

Query: 112 VFDTVMXXXXXXXXXXXXXXXXXXHNGNSKANWFPICQQFNNYCQQASGSVV 163
           +FD +M                  + GNS   W  +C  F+ YC Q + S++
Sbjct: 124 IFDALMVALLFSGNGAATAIGVLGYQGNSHVRWKKVCNVFDKYCHQVAASII 175


>Medtr7g108130.1 | plant integral membrane protein | HC |
           chr7:43972040-43974109 | 20130731
          Length = 191

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 26  SIMDFILRIXXXXXXXXXXXXXXXXEESLPFVTNFMQFR--AEYDDLPSFVFFVLANSLV 83
           +++D +LR+                +E+       +QF+  A+++ + + VFF++ N++ 
Sbjct: 27  NVLDVLLRVLGFLLTLTATIIVGFGKETKVISYASLQFKVTAKWEYMSAIVFFLVTNAIG 86

Query: 84  CGYLVLSLILSVFHIVRSSAVKSRVLLI-VFDTVMXXXXXXXXXXXXXXXXXXHNGNSKA 142
           C Y  +S+++S   I R+S  K+ +L+I + D V+                    GNS  
Sbjct: 87  CSYAAISMVVST--IARTSGNKTALLMITLLDLVIMALLFSANGAAGAVGVLGQKGNSHV 144

Query: 143 NWFPICQQFNNYCQQASGSVVGS 165
            W  +C  F+ YC+  + ++V S
Sbjct: 145 QWMKVCNVFDAYCRHMTVALVLS 167


>Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC |
           chr8:37100964-37099766 | 20130731
          Length = 194

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 49/106 (46%)

Query: 61  MQFRAEYDDLPSFVFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMXXX 120
           +   A++   P+FV+FV+ N +V  + ++ + + +      +      L+ VFDT+    
Sbjct: 66  VPLTAKFQHTPAFVYFVVPNGIVSLHNLVMIAMYILGPKFHNKGLQLALIAVFDTMALAL 125

Query: 121 XXXXXXXXXXXXXXXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
                           NGNS A W  IC +F +YC +  GS++ S+
Sbjct: 126 ASSGDGAATAMSELGRNGNSHAKWNKICDKFESYCNRGGGSLIASF 171


>Medtr0004s0210.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0004:83573-81269 | 20130731
          Length = 163

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 61  MQFRAEYDDLPSFVFFVLANSLVC--GYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMX 118
           + F A+Y + P+F +FV+ANS+V   G+ VL L         + ++  R L++  D V+ 
Sbjct: 39  VSFEAKYTNSPAFKYFVIANSIVTVYGFFVLFL--------PAESLLWR-LVVAMDMVLT 89

Query: 119 XXXXXXXXXXXXXXXXXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
                             NGN+ A W PIC     +C   +G++V S+
Sbjct: 90  MLLISSISAALAIAQVAKNGNNYAAWLPICGSVPKFCNHMTGALVASF 137


>Medtr0097s0070.1 | CASP POPTRDRAFT-like protein | HC |
           scaffold0097:39509-37693 | 20130731
          Length = 201

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 45/102 (44%)

Query: 65  AEYDDLPSFVFFVLANSLVCGYLVLSLILSVFHIVRSSAVKSRVLLIVFDTVMXXXXXXX 124
           A+++  P+FVFFV+AN     + ++ + L +             L+ + D +        
Sbjct: 71  AKFNQTPAFVFFVIANGNASLHNLVMIALDILGPQYDYKGLRLALIAILDMLTMALASAG 130

Query: 125 XXXXXXXXXXXHNGNSKANWFPICQQFNNYCQQASGSVVGSY 166
                       NGNS A W  IC +F +YC +  G+++ S+
Sbjct: 131 DGAATFMSALGRNGNSHARWDKICDKFESYCNRGGGALIASF 172