Miyakogusa Predicted Gene

Lj2g3v1277640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277640.1 Non Characterized Hit- tr|A3A8B8|A3A8B8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,62.96,0.000000000001,Oxygen-evolving enhancer protein
3,,PsbQ-like domain; no description,NULL; seg,NULL;
PsbQ,Photosyste,CUFF.36655.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g041910.1 | oxygen-evolving enhancer protein | HC | chr5:1...   256   1e-68
Medtr2g082580.1 | oxygen-evolving enhancer protein | HC | chr2:3...    68   6e-12
Medtr8g005175.1 | oxygen-evolving enhancer protein | HC | chr8:8...    53   2e-07
Medtr8g005175.2 | oxygen-evolving enhancer protein | HC | chr8:8...    48   7e-06

>Medtr5g041910.1 | oxygen-evolving enhancer protein | HC |
           chr5:18404095-18401663 | 20130731
          Length = 261

 Score =  256 bits (653), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 157/204 (76%), Gaps = 11/204 (5%)

Query: 1   MSSFTHATTLLHAHIKTKQRNTSKSTNPLPLINNQAPFSAEHNNDTTSRRKLISTFLTTS 60
           MSSFTHATTLLHAHIKTK +NTS + N      N    S     + T+RR L+STFL TS
Sbjct: 69  MSSFTHATTLLHAHIKTKHKNTSNNIN------NNVNNSLSSKQNVTNRRNLVSTFLATS 122

Query: 61  TXXXXXXXXXXXXXXXXXXXEKWGTRSFLKEHFFEPGLSPEDAVERIKQTAEGLHSMRDM 120
                               + WGTRSF+KEHFF PGLSPEDAV RIKQTAEGLH++R+M
Sbjct: 123 -----MVGVVHVTTTPLALAQNWGTRSFMKEHFFMPGLSPEDAVLRIKQTAEGLHNLREM 177

Query: 121 LESMSWRYVMFYIRLKQSYLDQDLKNAITTLPENRKKEYVKTANDLVDNMAELDRHVRSP 180
           LE++SWRYVMFYIRLKQ+YL+QDL+NAITTLPENR+KEYVKTAN+LVDN+ E+DR+VR+P
Sbjct: 178 LETLSWRYVMFYIRLKQNYLEQDLRNAITTLPENRRKEYVKTANELVDNLTEMDRYVRTP 237

Query: 181 KVYESYLYYERLLKSIDELVAILA 204
           KVYESYLYYE+ LKSIDELVA LA
Sbjct: 238 KVYESYLYYEKTLKSIDELVAQLA 261


>Medtr2g082580.1 | oxygen-evolving enhancer protein | HC |
           chr2:34656157-34654413 | 20130731
          Length = 230

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 3/126 (2%)

Query: 81  EKWGTRSFLKEHFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYL 140
           EK GTRSF+K+  +   +  + +V RIK+ A  L +M D++   +  YV  Y+RLK +++
Sbjct: 101 EKTGTRSFIKKKLYMANIGAKGSVLRIKKYAFDLLAMADLIAQDTLNYVRRYLRLKSTFM 160

Query: 141 DQDLKNAITTLPENRKKEYVKTANDLVDNMAELDRHVRSPKVYESYLYY---ERLLKSID 197
             D    I+ +P   K++    AN L DN  +L+   R+  + E+   Y   E +LK + 
Sbjct: 161 YFDFDKVISAVPVEDKQQLTDVANKLFDNFEKLEEASRNKNLLETQACYKETEVMLKDVM 220

Query: 198 ELVAIL 203
           + + I+
Sbjct: 221 DRMTIM 226


>Medtr8g005175.1 | oxygen-evolving enhancer protein | HC |
           chr8:83317-85681 | 20130731
          Length = 232

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 89  LKEHFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYLDQDLKNAI 148
           LKE F+   L+P +A  R K++A+ + + +  ++  +W Y+   +RL+  YL  DL   I
Sbjct: 117 LKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTII 176

Query: 149 TTLPENRKKEYVKTANDLVDNMAELD--RHVRSPKVYESY 186
           +  P+++KK   +    L  ++  LD    V+SP   E Y
Sbjct: 177 SAKPKDQKKSLKELTGKLFQDIDNLDYAAKVKSPSDAEKY 216


>Medtr8g005175.2 | oxygen-evolving enhancer protein | HC |
           chr8:83599-85681 | 20130731
          Length = 266

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 89  LKEHFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYLDQDLKNAI 148
           LKE F+   L+P +A  R K++A+ + + +  ++  +W Y+   +RL+  YL  DL   I
Sbjct: 117 LKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTII 176

Query: 149 TTLPENRKKEYVKTANDL---VDNMA 171
           +  P+++KK   +    L   +DN++
Sbjct: 177 SAKPKDQKKSLKELTGKLFQDIDNVS 202