Miyakogusa Predicted Gene

Lj2g3v1267210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1267210.2 CUFF.36630.2
         (335 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g043480.2 | UvrB/uvrC domain protein | HC | chr5:19116699-...   493   e-140
Medtr5g043480.1 | UvrB/uvrC domain protein | HC | chr5:19116700-...   422   e-118
Medtr5g043480.3 | UvrB/uvrC domain protein | HC | chr5:19116700-...   370   e-103
Medtr5g043480.4 | UvrB/uvrC domain protein | HC | chr5:19116700-...   254   7e-68

>Medtr5g043480.2 | UvrB/uvrC domain protein | HC |
           chr5:19116699-19112213 | 20130731
          Length = 313

 Score =  493 bits (1269), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/335 (72%), Positives = 268/335 (80%), Gaps = 28/335 (8%)

Query: 1   MVQGMSLSTMVTCGKSRPCGSSLNWMTPFEPFKRSHITSTTGKHLVWNQCVQSLFLMGYP 60
           MVQG+SLST+ TCGKSR  GS      PFEPFK+SHITS+TGKHLVWN+CV+SL  +GYP
Sbjct: 1   MVQGVSLSTLATCGKSRIYGS------PFEPFKQSHITSSTGKHLVWNKCVKSLVFIGYP 54

Query: 61  YVSR-RGDFKAEAAWMFRGGGEQELDASVEHSESANEDILMFFFQLDLATRVQYALNMEQ 119
           + SR R  FK EA WMFRGG EQELDASVE SESANEDILMFFFQLDLATRVQ       
Sbjct: 55  FASRQRSGFKVEAGWMFRGG-EQELDASVEQSESANEDILMFFFQLDLATRVQ------- 106

Query: 120 YDIAQQLRNKLSEVEEDIIKQQQSKRGLSSKGEAQDKGLSIIRLRSDLQSAIEKEDYALA 179
                        VEE++IKQ+QSKRG+SSK EAQDK LS+IRLRSDLQSAIE EDYALA
Sbjct: 107 -------------VEEEVIKQKQSKRGMSSKSEAQDKALSVIRLRSDLQSAIENEDYALA 153

Query: 180 AELRDKIXXXXXXXXXXXXXXXXHENAQYAFRLGQKVRHKIFGYTAVICGMDPVCSESSS 239
           A+LRD+I                HENAQY FRLGQKV+HK+FGY A+I GMDPVCSESSS
Sbjct: 154 AKLRDEISKLEAESLAASAKALAHENAQYVFRLGQKVKHKMFGYRAIIVGMDPVCSESSS 213

Query: 240 WMENAEIKKLSRGSTQPFYQILVDVRAEPNLLVAYVAEENLLTPDKPDMGRFDHPYISFL 299
           WMENA++KKLSRG+ QPFYQ+LVDVRAEP+LLVAYVAEENLL PDK D GRFDHPY+SFL
Sbjct: 214 WMENAQVKKLSRGTAQPFYQVLVDVRAEPDLLVAYVAEENLLVPDKADKGRFDHPYMSFL 273

Query: 300 FYGVDSAGDFIPIKQLREKYNKPRHELPTDPPNDE 334
           FYG+DSAGDFIPIKQLREKYNKPRHE+P DPP DE
Sbjct: 274 FYGMDSAGDFIPIKQLREKYNKPRHEIPFDPPTDE 308


>Medtr5g043480.1 | UvrB/uvrC domain protein | HC |
           chr5:19116700-19112830 | 20130731
          Length = 300

 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/275 (74%), Positives = 232/275 (84%), Gaps = 8/275 (2%)

Query: 1   MVQGMSLSTMVTCGKSRPCGSSLNWMTPFEPFKRSHITSTTGKHLVWNQCVQSLFLMGYP 60
           MVQG+SLST+ TCGKSR  GS      PFEPFK+SHITS+TGKHLVWN+CV+SL  +GYP
Sbjct: 1   MVQGVSLSTLATCGKSRIYGS------PFEPFKQSHITSSTGKHLVWNKCVKSLVFIGYP 54

Query: 61  YVSR-RGDFKAEAAWMFRGGGEQELDASVEHSESANEDILMFFFQLDLATRVQYALNMEQ 119
           + SR R  FK EA WMFRGG EQELDASVE SESANEDILMFFFQLDLATRVQ ALNME+
Sbjct: 55  FASRQRSGFKVEAGWMFRGG-EQELDASVEQSESANEDILMFFFQLDLATRVQCALNMEE 113

Query: 120 YDIAQQLRNKLSEVEEDIIKQQQSKRGLSSKGEAQDKGLSIIRLRSDLQSAIEKEDYALA 179
           YDIA+QLRNKL+EVEE++IKQ+QSKRG+SSK EAQDK LS+IRLRSDLQSAIE EDYALA
Sbjct: 114 YDIAKQLRNKLTEVEEEVIKQKQSKRGMSSKSEAQDKALSVIRLRSDLQSAIENEDYALA 173

Query: 180 AELRDKIXXXXXXXXXXXXXXXXHENAQYAFRLGQKVRHKIFGYTAVICGMDPVCSESSS 239
           A+LRD+I                HENAQY FRLGQKV+HK+FGY A+I GMDPVCSESSS
Sbjct: 174 AKLRDEISKLEAESLAASAKALAHENAQYVFRLGQKVKHKMFGYRAIIVGMDPVCSESSS 233

Query: 240 WMENAEIKKLSRGSTQPFYQILVDVRAEPNLLVAY 274
           WMENA++KKLSRG+ QPFYQ+LVDVRAEP+LLVAY
Sbjct: 234 WMENAQVKKLSRGTAQPFYQVLVDVRAEPDLLVAY 268


>Medtr5g043480.3 | UvrB/uvrC domain protein | HC |
           chr5:19116700-19112171 | 20130731
          Length = 243

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 200/237 (84%), Gaps = 3/237 (1%)

Query: 98  ILMFFFQLDLATRVQYALNMEQYDIAQQLRNKLSEVEEDIIKQQQSKRGLSSKGEAQDKG 157
           I++  F +   +  Q ALNME+YDIA+QLRNKL+EVEE++IKQ+QSKRG+SSK EAQDK 
Sbjct: 5   IMLHLFGI---SECQCALNMEEYDIAKQLRNKLTEVEEEVIKQKQSKRGMSSKSEAQDKA 61

Query: 158 LSIIRLRSDLQSAIEKEDYALAAELRDKIXXXXXXXXXXXXXXXXHENAQYAFRLGQKVR 217
           LS+IRLRSDLQSAIE EDYALAA+LRD+I                HENAQY FRLGQKV+
Sbjct: 62  LSVIRLRSDLQSAIENEDYALAAKLRDEISKLEAESLAASAKALAHENAQYVFRLGQKVK 121

Query: 218 HKIFGYTAVICGMDPVCSESSSWMENAEIKKLSRGSTQPFYQILVDVRAEPNLLVAYVAE 277
           HK+FGY A+I GMDPVCSESSSWMENA++KKLSRG+ QPFYQ+LVDVRAEP+LLVAYVAE
Sbjct: 122 HKMFGYRAIIVGMDPVCSESSSWMENAQVKKLSRGTAQPFYQVLVDVRAEPDLLVAYVAE 181

Query: 278 ENLLTPDKPDMGRFDHPYISFLFYGVDSAGDFIPIKQLREKYNKPRHELPTDPPNDE 334
           ENLL PDK D GRFDHPY+SFLFYG+DSAGDFIPIKQLREKYNKPRHE+P DPP DE
Sbjct: 182 ENLLVPDKADKGRFDHPYMSFLFYGMDSAGDFIPIKQLREKYNKPRHEIPFDPPTDE 238


>Medtr5g043480.4 | UvrB/uvrC domain protein | HC |
           chr5:19116700-19112189 | 20130731
          Length = 210

 Score =  254 bits (650), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 145/179 (81%), Gaps = 2/179 (1%)

Query: 96  EDILMFFFQLDLATRVQYALNMEQYDIAQQLRNKLSEVEEDIIKQQQSKRGLSSKGEAQD 155
           ED +M    L   +  Q ALNME+YDIA+QLRNKL+EVEE++IKQ+QSKRG+SSK EAQD
Sbjct: 2   EDFIML--HLFGISECQCALNMEEYDIAKQLRNKLTEVEEEVIKQKQSKRGMSSKSEAQD 59

Query: 156 KGLSIIRLRSDLQSAIEKEDYALAAELRDKIXXXXXXXXXXXXXXXXHENAQYAFRLGQK 215
           K LS+IRLRSDLQSAIE EDYALAA+LRD+I                HENAQY FRLGQK
Sbjct: 60  KALSVIRLRSDLQSAIENEDYALAAKLRDEISKLEAESLAASAKALAHENAQYVFRLGQK 119

Query: 216 VRHKIFGYTAVICGMDPVCSESSSWMENAEIKKLSRGSTQPFYQILVDVRAEPNLLVAY 274
           V+HK+FGY A+I GMDPVCSESSSWMENA++KKLSRG+ QPFYQ+LVDVRAEP+LLVAY
Sbjct: 120 VKHKMFGYRAIIVGMDPVCSESSSWMENAQVKKLSRGTAQPFYQVLVDVRAEPDLLVAY 178