Miyakogusa Predicted Gene

Lj2g3v1239960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1239960.1 CUFF.36587.1
         (524 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g024620.1 | 3-phosphoshikimate 1-carboxyvinyltransferase |...   899   0.0  

>Medtr4g024620.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | HC
           | chr4:8331048-8324892 | 20130731
          Length = 522

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/524 (83%), Positives = 466/524 (88%), Gaps = 2/524 (0%)

Query: 1   MAQVSRIHNLPQTTPILHHSSNPQKPKSANSISLRSHLWGSSKSWSLKHKNGGFIGNCDV 60
           MAQ+S+I+NL QTT   H+S+N  K  SA S+SLRS +WGSSKSWSLKHKNG FIGNCDV
Sbjct: 1   MAQLSKINNLVQTTQNFHNSTNSNKLNSAKSVSLRSSIWGSSKSWSLKHKNGVFIGNCDV 60

Query: 61  GNGYSGVFKVSASVAAAEKPSTAPEIVLEPIREIAGTITLPGSKSLSNRILLLAALSEGT 120
           G G S V K SA+VAAAEKPSTAPEIVLEPI+EI+G+ITLPGSKSLSNRILLLAALSEGT
Sbjct: 61  GRGNSVVLKASANVAAAEKPSTAPEIVLEPIKEISGSITLPGSKSLSNRILLLAALSEGT 120

Query: 121 TVVDNLLNSEDVHYMLGALRTLGLHVEDDKATKQAIVEGCGGLFPTSESKDEVNLFLGNA 180
           TVV+NLL+SED+HYML AL+TLGL VEDDK TKQA+VEG GGLFP  ESKDEVNLFLGNA
Sbjct: 121 TVVENLLDSEDIHYMLEALKTLGLRVEDDKTTKQAVVEGSGGLFP--ESKDEVNLFLGNA 178

Query: 181 GTAMRPLTAAVTAAGGNASYILDGVPRMRERPIEDLVTGLKQLGADVDCFLGTKCPPVRV 240
           GTAMRPLTAA+ AAGGN  YILDGVPRMRERPI DLV+GLKQLGADVDC+LGT CPPVR+
Sbjct: 179 GTAMRPLTAALVAAGGNTRYILDGVPRMRERPIGDLVSGLKQLGADVDCYLGTNCPPVRI 238

Query: 241 IXXXXXXXXXXXXXXXISSQYXXXXXXXXXXXXGDVEIEIIDKLISVPYVEMTLKLMERF 300
           I               ISSQY            GDVEIEI+DKLISVPYVEMTLKLMERF
Sbjct: 239 IGKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERF 298

Query: 301 GVTVEHSGNWDKFLVRGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVHGCGTSSL 360
           GV VEHS NWD+FLV GGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITV GCGTSSL
Sbjct: 299 GVFVEHSANWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVIGCGTSSL 358

Query: 361 QGDVKFAEVLEKMGAKVTWTENSVTLTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVA 420
           QGDVKFAEVLEKMGAKVTWTENSVT+TGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVA
Sbjct: 359 QGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVA 418

Query: 421 LFANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNITSIDTY 480
           L+ANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLN+TSIDTY
Sbjct: 419 LYANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTSIDTY 478

Query: 481 DDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFEVLERFTKH 524
           DDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYF+VLERFTKH
Sbjct: 479 DDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFQVLERFTKH 522