Miyakogusa Predicted Gene

Lj2g3v1239840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1239840.1 Non Characterized Hit- tr|B9RDA1|B9RDA1_RICCO
Transketolase, putative OS=Ricinus communis
GN=RCOM_16,92.07,0,Transketolase, pyrimidine binding
domain,Transketolase-like, pyrimidine-binding domain; Thiamin
diph,NODE_33443_length_908_cov_1061.459229.path1.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g024630.2 | plastid transketolase | HC | chr4:8337789-8334...   441   e-124
Medtr4g024630.1 | plastid transketolase | HC | chr4:8338986-8333...   440   e-124
Medtr5g059410.1 | plastid transketolase | HC | chr5:24645325-246...   432   e-121
Medtr1g116120.1 | plastid transketolase | HC | chr1:52485234-524...   432   e-121
Medtr0776s0010.1 | transketolase 1, thiamin-binding protein | LC...   192   2e-49
Medtr8g068265.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...    50   2e-06
Medtr8g068300.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |...    49   5e-06

>Medtr4g024630.2 | plastid transketolase | HC | chr4:8337789-8334009
           | 20130731
          Length = 581

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/227 (93%), Positives = 220/227 (96%)

Query: 1   MTLLKMFGNFQKDTPAERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRGA 60
           MTLLK FG+FQ D+PAERNVRFGVREHGMGAICNGIALHS GLIPYCATFFVFTDYMRGA
Sbjct: 303 MTLLKKFGDFQSDSPAERNVRFGVREHGMGAICNGIALHSRGLIPYCATFFVFTDYMRGA 362

Query: 61  IRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 120
           IRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK
Sbjct: 363 IRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 422

Query: 121 VAVVNRKRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNSTGNKPDVILIGTGSELEIA 180
           VAV+NRKRPSILALSRQKLPNL GTSIEGVEKGGY +SDNSTGNKPDVILIGTGSELEIA
Sbjct: 423 VAVLNRKRPSILALSRQKLPNLAGTSIEGVEKGGYIVSDNSTGNKPDVILIGTGSELEIA 482

Query: 181 AKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSI 227
            KA +DLRKEGKAVRVVSFVSWELFDEQS+AYKESVLP+AV+ARVSI
Sbjct: 483 YKAGEDLRKEGKAVRVVSFVSWELFDEQSQAYKESVLPTAVTARVSI 529


>Medtr4g024630.1 | plastid transketolase | HC | chr4:8338986-8333916
           | 20130731
          Length = 735

 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/227 (93%), Positives = 220/227 (96%)

Query: 1   MTLLKMFGNFQKDTPAERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRGA 60
           MTLLK FG+FQ D+PAERNVRFGVREHGMGAICNGIALHS GLIPYCATFFVFTDYMRGA
Sbjct: 457 MTLLKKFGDFQSDSPAERNVRFGVREHGMGAICNGIALHSRGLIPYCATFFVFTDYMRGA 516

Query: 61  IRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 120
           IRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK
Sbjct: 517 IRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 576

Query: 121 VAVVNRKRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNSTGNKPDVILIGTGSELEIA 180
           VAV+NRKRPSILALSRQKLPNL GTSIEGVEKGGY +SDNSTGNKPDVILIGTGSELEIA
Sbjct: 577 VAVLNRKRPSILALSRQKLPNLAGTSIEGVEKGGYIVSDNSTGNKPDVILIGTGSELEIA 636

Query: 181 AKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSI 227
            KA +DLRKEGKAVRVVSFVSWELFDEQS+AYKESVLP+AV+ARVSI
Sbjct: 637 YKAGEDLRKEGKAVRVVSFVSWELFDEQSQAYKESVLPTAVTARVSI 683


>Medtr5g059410.1 | plastid transketolase | HC |
           chr5:24645325-24641837 | 20130731
          Length = 735

 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/227 (89%), Positives = 217/227 (95%)

Query: 1   MTLLKMFGNFQKDTPAERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRGA 60
           MTLLK FG+FQK TP ERNVRFGVREH MGAICNGIALHSPG IPYCATFFVFTDYMR A
Sbjct: 457 MTLLKSFGDFQKATPEERNVRFGVREHAMGAICNGIALHSPGFIPYCATFFVFTDYMRAA 516

Query: 61  IRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 120
           IR+SAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN+LMLRPADGNETAG+Y+
Sbjct: 517 IRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPADGNETAGSYR 576

Query: 121 VAVVNRKRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNSTGNKPDVILIGTGSELEIA 180
           VAV+N+KRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNS+GNKPDVILIGTGSELEIA
Sbjct: 577 VAVLNQKRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNSSGNKPDVILIGTGSELEIA 636

Query: 181 AKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSI 227
           A AADDLRKEGK VRVVSFVSWELFD+QS+ YKESVLP++V+ARVSI
Sbjct: 637 AAAADDLRKEGKTVRVVSFVSWELFDDQSDEYKESVLPASVTARVSI 683


>Medtr1g116120.1 | plastid transketolase | HC |
           chr1:52485234-52489276 | 20130731
          Length = 735

 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/227 (89%), Positives = 217/227 (95%)

Query: 1   MTLLKMFGNFQKDTPAERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRGA 60
           MTLLK FG+FQK TP ERNVRFGVREH MGAICNGIALHSPG IPYCATFFVFTDYMR A
Sbjct: 457 MTLLKSFGDFQKATPEERNVRFGVREHAMGAICNGIALHSPGFIPYCATFFVFTDYMRAA 516

Query: 61  IRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYK 120
           IR+SAL EAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPN+LMLRPADGNETAG+Y+
Sbjct: 517 IRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPADGNETAGSYR 576

Query: 121 VAVVNRKRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNSTGNKPDVILIGTGSELEIA 180
           VAV+N+KRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNS+GNKPDVILIGTGSELEIA
Sbjct: 577 VAVLNQKRPSILALSRQKLPNLPGTSIEGVEKGGYTISDNSSGNKPDVILIGTGSELEIA 636

Query: 181 AKAADDLRKEGKAVRVVSFVSWELFDEQSEAYKESVLPSAVSARVSI 227
           A AADDLRKEGK VRVVSFVSWELFD+QS+ YKESVLP++V+ARVSI
Sbjct: 637 AAAADDLRKEGKTVRVVSFVSWELFDDQSDEYKESVLPASVTARVSI 683


>Medtr0776s0010.1 | transketolase 1, thiamin-binding protein | LC |
            scaffold0776:6267-63 | 20130731
          Length = 1918

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 137/208 (65%), Gaps = 5/208 (2%)

Query: 22   FGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRGAIRLSALSEAGVIYVMTHDSIG 81
            +GVRE GM A+ NG+ALH  G IPY  TF VF+DY R AIR+SAL    VI+V+THDSIG
Sbjct: 1335 YGVREFGMIAMMNGLALHG-GFIPYGGTFLVFSDYARNAIRMSALMNRRVIHVLTHDSIG 1393

Query: 82   LGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVVNRKRPSILALSRQKLPN 141
            LGEDGPTHQPIEH+AS R +PN+ + RP D  ETA A++VA+     PS L LSRQ LP 
Sbjct: 1394 LGEDGPTHQPIEHVASLRLIPNLDVWRPCDTIETAIAWQVAIERVDGPSALVLSRQNLPQ 1453

Query: 142  LPGTSI--EGVEKGGYTISDNSTGNKPDVILIGTGSELEIAAKAADDLRKEGKAVRVVSF 199
                 I  E + +GGY +S+ + G  PDV+LI TGSE+ +A  A   L  +G    VVS 
Sbjct: 1454 SAQDDIQVERIRRGGYVLSE-AAGGSPDVVLIATGSEVALALDAQLALADKGVRASVVSM 1512

Query: 200  VSWELFDEQSEAYKESVLPSAVSARVSI 227
             S  +FD Q  AY+  VLP+ V  RV++
Sbjct: 1513 PSTTVFDRQDAAYRADVLPAGVR-RVAV 1539


>Medtr8g068265.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr8:28466086-28471025 | 20130731
          Length = 711

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 83/197 (42%), Gaps = 24/197 (12%)

Query: 10  FQKDTPAERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRG---AIRLSAL 66
           FQK  P +R    G+ E        G+A  + GL P+CA +  F    RG    +    L
Sbjct: 427 FQKRFP-DRCFDVGIAEQHAVTFAAGLA--AEGLKPFCAIYSSF--LQRGYDQVVHDVDL 481

Query: 67  SEAGVIYVMTHDSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVVN 125
            +  V + M  D  GL G DGPTH     +     +PN++++ P+D  E       A   
Sbjct: 482 QKLPVRFAM--DRAGLVGADGPTHCGAFDITFMACLPNMIVMAPSDEAELMNMVATAAAI 539

Query: 126 RKRPSILALSR-----QKLP-NLPGTSIEGVEKGGYTISDNSTGNKPDVILIGTGSELEI 179
             RPS     R       LP N  GT +E + KG   +  +       V ++G G  ++ 
Sbjct: 540 DDRPSCFRFPRGNGIGANLPLNNKGTPLE-IGKGRILLEGSR------VAILGYGCMVQQ 592

Query: 180 AAKAADDLRKEGKAVRV 196
             KAA+ LR  G  V V
Sbjct: 593 CMKAAEMLRAVGVYVTV 609


>Medtr8g068300.1 | 1-deoxy-D-xylulose-5-phosphate synthase | HC |
           chr8:28474611-28479112 | 20130731
          Length = 710

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 83/197 (42%), Gaps = 24/197 (12%)

Query: 10  FQKDTPAERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRG---AIRLSAL 66
           FQK  P +R    G+ E        G+A  + GL P+CA +  F    RG    +    L
Sbjct: 427 FQKRFP-DRCFDVGIAEQHAVTFAAGLA--TEGLKPFCAIYSTF--LQRGYDQVVHDVDL 481

Query: 67  SEAGVIYVMTHDSIGL-GEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVVN 125
            +  V + M  D  GL G DGPTH     +     +PN++++ P+D  E       A   
Sbjct: 482 QKLPVRFAM--DRAGLVGADGPTHCGAFDITFMACLPNMIVMAPSDEAELMNMVATAAAI 539

Query: 126 RKRPSILALSR-----QKLP-NLPGTSIEGVEKGGYTISDNSTGNKPDVILIGTGSELEI 179
             RPS     R       LP +  GT +E + KG   +  +       V ++G G  ++ 
Sbjct: 540 DDRPSCFRFPRGNGIGADLPLHNKGTPLE-IGKGRILLEGSR------VAILGYGCMVQQ 592

Query: 180 AAKAADDLRKEGKAVRV 196
             KAA+ LR  G  V V
Sbjct: 593 CMKAAEMLRAVGVYVTV 609