Miyakogusa Predicted Gene

Lj2g3v1228820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1228820.1 Non Characterized Hit- tr|D7MEY9|D7MEY9_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,43.26,3e-18,seg,NULL; RPAP1_N,RNA polymerase II-associated
protein 1, N-terminal; SUBFAMILY NOT NAMED,NULL; FAMI,CUFF.36532.1
         (380 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g046240.1 | RPAP1-like, carboxy-terminal protein | HC | ch...   199   3e-51
Medtr1g031840.1 | hypothetical protein | HC | chr1:11190985-1118...    82   8e-16

>Medtr5g046240.1 | RPAP1-like, carboxy-terminal protein | HC |
           chr5:20281096-20271961 | 20130731
          Length = 1479

 Score =  199 bits (507), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 160/297 (53%), Gaps = 50/297 (16%)

Query: 74  HWRPLSSKXXXXXXXXXXXXXXXXXXXXKAFMEFESVSAFANPVQRRRKKDMDFRKWKEI 133
           HWRPL+SK                      FM FE  +AFANP                 
Sbjct: 7   HWRPLNSKGGYDHDNDDGDNDVEDEDD-TDFMGFEKAAAFANP----------------- 48

Query: 134 TQDDNSSIGKESEEDVSSFSRNTRKKKNANGSMNAGKKTSTLSDDNVLASAELGAKMQLD 193
                     + E+DVSS+   T +KKN NG  N  KK S+ SD +V AS E+ AK QL 
Sbjct: 49  ----------DLEKDVSSYGPTTGRKKNENGGKNTSKKISSYSDGSVFASMEVDAKPQLV 98

Query: 194 NSDGGFINAATSMELDVSNK------VKPDLERIHSDRTLDNNVDSLDVLGPEKNYXXXX 247
             DGGFIN+ATSMELD SNK         + ++I SDR  D++  S      EKNY    
Sbjct: 99  KLDGGFINSATSMELDTSNKDDKKEVFAAERDKIFSDRMTDHSSTS------EKNY---- 148

Query: 248 XXXXXXXXXEQEPMSFEGEIDAENRARIKQMSAEEIVEARAEIMEKISPALLEVLQKRGX 307
                    EQE  S E EID+ENRARI+QMS EEI EA+A+IMEKISPALL+VLQKRG 
Sbjct: 149 ------FMHEQESTSLENEIDSENRARIQQMSTEEIEEAKADIMEKISPALLKVLQKRGK 202

Query: 308 XXXXXXXXXXXXMGTGSESVNRHVQNSQDAKCVHKEDDISHTNMTPPSRQKLDDEKI 364
                       +G  +ESVN+ VQ +Q AK +  EDDISHT M PPS+++LDD+ +
Sbjct: 203 EKLKKPNSLKSEVGAVTESVNQQVQITQGAKHLQTEDDISHTIMAPPSKKQLDDKNV 259


>Medtr1g031840.1 | hypothetical protein | HC |
           chr1:11190985-11184712 | 20130731
          Length = 762

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 12/82 (14%)

Query: 1   MENQNGKAVDPKKKVKVLTTSSLKINEQD-------ASDLVGSIVEKGISDSPNN--STP 51
           ME  NG+A   KKKVK+L TSS+++++Q        A  LVGSIVEKGI DS     +T 
Sbjct: 109 MEKPNGEA---KKKVKILNTSSIQLSQQQQQQQQQIAFQLVGSIVEKGIDDSGTQKKTTT 165

Query: 52  FISFPKPTVLPFPVARHRSHGP 73
             SFPKPTV+PFPVARHRSHGP
Sbjct: 166 AYSFPKPTVVPFPVARHRSHGP 187