Miyakogusa Predicted Gene

Lj2g3v1226720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1226720.1 tr|B9HWV3|B9HWV3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_659034 PE=4
SV=1,34.27,0.00000000000005,seg,NULL; DnaJ,Heat shock protein DnaJ,
N-terminal; coiled-coil,NULL; Chaperone J-domain,Heat shock
,CUFF.36528.1
         (675 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g047140.1 | heat shock protein-binding protein | HC | chr5...   365   e-101
Medtr5g047140.2 | heat shock protein-binding protein | HC | chr5...   176   1e-43

>Medtr5g047140.1 | heat shock protein-binding protein | HC |
           chr5:20665330-20658771 | 20130731
          Length = 587

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/547 (43%), Positives = 307/547 (56%), Gaps = 116/547 (21%)

Query: 142 RNAYKKESVSNMDRRKKSFFGEDAGGSRYGLYGXXXXXXXXXXXXXXFMDRDEWEKWEKV 201
           R    K S SN+   KK F       +RYGLYG               + R   E+WE+ 
Sbjct: 144 RQKSNKASASNV--WKKVFSPNAKERNRYGLYGSESDSSDSDCSDCEVIKR---EQWEED 198

Query: 202 SAKRKRGVSNNQTCQEEHAGPSRCHNNVYIDIDEENTYEQHAEVPVYPGPSNGKYVKESQ 261
           +A +K  V N      EH   S  H N Y + + EN  E+H + P+Y GPS     KE+Q
Sbjct: 199 TAMKKGRVFN------EHVSSSGLHTNNYNNREVENRSEKHGKGPLY-GPS---CSKENQ 248

Query: 262 PSFSARDD---------SQVPRCPKEKNCNFCNSVAGPSKFKENQPSFSYKDGSQVNGIY 312
            SF+ +DD          +V  CPK KNCNFCN   G SK +                  
Sbjct: 249 SSFTGKDDIRNGERTTKKKVNPCPKSKNCNFCNDGIGSSKSRNELG-------------- 294

Query: 313 FNVETKTSFKDSDQKAEQSSKSPRSESVKEMHSFRQSFDVKNQCSDIKNGERTREEKVSP 372
              + +++FKD                                  DI++GE     KVS 
Sbjct: 295 ---DDESTFKD----------------------------------DIQHGE-----KVSA 312

Query: 373 SPKGKNSDYFSGASGASSFKKDLSVEESKSMGFSPNACEMQVDNNESALGSKDAGFQKDM 432
            P  +NS++ +G +G+SS KK +  +ESK M  +  A +MQVD++ES L           
Sbjct: 313 CPNSENSNFCNGVAGSSSLKKGVGDKESKFMSSNQGAHDMQVDDDESPL----------- 361

Query: 433 GDLSFKKDLGVEESKSMGFSPNACEMQVDNNESALESKEASLAEVYSICASIDERHVNGN 492
                                NA + QVDN ES L SK+ +++E  S  AS DERH+NG+
Sbjct: 362 ---------------------NAHDRQVDNEESPLRSKDDNISEENSNGASFDERHINGH 400

Query: 493 GLVLHGQDGGLTASNERNIINEKEKLKETDEYKQAVEEEWASRQRQLQIQAEEAQRLRKR 552
            L L+ QD  LTASNE+NIIN+KEK K+TD YK+A+EEE ASRQRQLQIQAEEAQ++RKR
Sbjct: 401 ELALNTQDADLTASNEKNIINQKEKHKQTDLYKKAMEEELASRQRQLQIQAEEAQKMRKR 460

Query: 553 KKAESQRILDMQRRQKERIEEVRETQKKDEEFLNMKEQLRVEIRKRLNQLEMRCSDMTSL 612
           KKAE+ R+LD++RR KER+EEVRET KKD+E +N K++LRVEI+K+LN LE RC DMTSL
Sbjct: 461 KKAENSRLLDIERRSKERLEEVRETLKKDKELMNTKDELRVEIKKKLNHLENRCIDMTSL 520

Query: 613 LRGLGIHVGGSF----PKELHAAYKRALFKFHPDRASKTDIREQVEAEEKFKLISRLKDK 668
           LRGLG++VG S      KE+H AYK A+ KFHPDRASKTDIREQVEAEE  KLISR+K+K
Sbjct: 521 LRGLGVNVGASLRQPTQKEVHTAYKHAMLKFHPDRASKTDIREQVEAEETCKLISRMKEK 580

Query: 669 YLLTPCR 675
           +  T  R
Sbjct: 581 FCSTSWR 587



 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 12/82 (14%)

Query: 1  MMEKGVSREHFRPRTCSGKKSAPETSQVKKEGLKNXXXXXXXXXXXXXXXXLESPEFVSR 60
          M+ KGVSREHFRPRTCS  K+A +T Q K + L+N                L+S  F   
Sbjct: 1  MLGKGVSREHFRPRTCSSGKNASKTGQAKGD-LEN-----------IVFIDLDSDHFDDV 48

Query: 61 KVRGSCGPSRERTFTPQSVISI 82
          ++ GS GPS++RT TPQSVISI
Sbjct: 49 EIIGSSGPSKDRTSTPQSVISI 70


>Medtr5g047140.2 | heat shock protein-binding protein | HC |
           chr5:20665330-20661027 | 20130731
          Length = 474

 Score =  176 bits (445), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 185/385 (48%), Gaps = 110/385 (28%)

Query: 168 SRYGLYGXXXXXXXXXXXXXXFMDRDEWEKWEKVSAKRKRGVSNNQTCQEEHAGPSRCHN 227
           +RYGLYG               + R   E+WE+ +A +K  V N      EH   S  H 
Sbjct: 168 NRYGLYGSESDSSDSDCSDCEVIKR---EQWEEDTAMKKGRVFN------EHVSSSGLHT 218

Query: 228 NVYIDIDEENTYEQHAEVPVYPGPSNGKYVKESQPSFSARDD---------SQVPRCPKE 278
           N Y + + EN  E+H + P+Y GPS     KE+Q SF+ +DD          +V  CPK 
Sbjct: 219 NNYNNREVENRSEKHGKGPLY-GPS---CSKENQSSFTGKDDIRNGERTTKKKVNPCPKS 274

Query: 279 KNCNFCNSVAGPSKFKENQPSFSYKDGSQVNGIYFNVETKTSFKDSDQKAEQSSKSPRSE 338
           KNCNFCN   G SK +                     + +++FKD               
Sbjct: 275 KNCNFCNDGIGSSKSRNELG-----------------DDESTFKD--------------- 302

Query: 339 SVKEMHSFRQSFDVKNQCSDIKNGERTREEKVSPSPKGKNSDYFSGASGASSFKKDLSVE 398
                              DI++GE     KVS  P  +NS++ +G +G+SS KK +  +
Sbjct: 303 -------------------DIQHGE-----KVSACPNSENSNFCNGVAGSSSLKKGVGDK 338

Query: 399 ESKSMGFSPNACEMQVDNNESALGSKDAGFQKDMGDLSFKKDLGVEESKSMGFSPNACEM 458
           ESK M  +  A +MQVD++ES L                                NA + 
Sbjct: 339 ESKFMSSNQGAHDMQVDDDESPL--------------------------------NAHDR 366

Query: 459 QVDNNESALESKEASLAEVYSICASIDERHVNGNGLVLHGQDGGLTASNERNIINEKEKL 518
           QVDN ES L SK+ +++E  S  AS DERH+NG+ L L+ QD  LTASNE+NIIN+KEK 
Sbjct: 367 QVDNEESPLRSKDDNISEENSNGASFDERHINGHELALNTQDADLTASNEKNIINQKEKH 426

Query: 519 KETDEYKQAVEEEWASRQRQLQIQA 543
           K+TD YK+A+EEE ASRQRQLQIQ 
Sbjct: 427 KQTDLYKKAMEEELASRQRQLQIQV 451



 Score = 70.1 bits (170), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 12/82 (14%)

Query: 1  MMEKGVSREHFRPRTCSGKKSAPETSQVKKEGLKNXXXXXXXXXXXXXXXXLESPEFVSR 60
          M+ KGVSREHFRPRTCS  K+A +T Q K + L+N                L+S  F   
Sbjct: 1  MLGKGVSREHFRPRTCSSGKNASKTGQAKGD-LEN-----------IVFIDLDSDHFDDV 48

Query: 61 KVRGSCGPSRERTFTPQSVISI 82
          ++ GS GPS++RT TPQSVISI
Sbjct: 49 EIIGSSGPSKDRTSTPQSVISI 70