Miyakogusa Predicted Gene

Lj2g3v1225640.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1225640.2 Non Characterized Hit- tr|I3T3C1|I3T3C1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.86,0,seg,NULL;
AAA,ATPase, AAA-type, core; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; P-loop contai,CUFF.36520.2
         (417 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g105480.1 | ribulose bisphosphate carboxylase/oxygenase ac...   723   0.0  
Medtr2g105480.3 | ribulose bisphosphate carboxylase/oxygenase ac...   602   e-172
Medtr2g105480.2 | ribulose bisphosphate carboxylase/oxygenase ac...   504   e-143
Medtr3g068030.1 | ribulose bisphosphate carboxylase/oxygenase ac...   336   2e-92
Medtr3g068030.2 | ribulose bisphosphate carboxylase/oxygenase ac...   336   3e-92
Medtr4g021210.1 | ribulose bisphosphate carboxylase/oxygenase ac...   336   3e-92
Medtr5g080450.1 | ribulose bisphosphate carboxylase/oxygenase ac...   330   1e-90

>Medtr2g105480.1 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr2:45485203-45480838 | 20130731
          Length = 418

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/418 (82%), Positives = 377/418 (90%), Gaps = 6/418 (1%)

Query: 6   MAKVLPLWIP-----VPNSKHAFR-SQLSXXXXXXXXXXCSSDNNNKKRLSQQSSWEAKD 59
           MAK+L L  P     +P S ++F   + S          C+SD+  KK+LS+QSSWE KD
Sbjct: 1   MAKLLLLVRPPYLSVIPTSSNSFSFKKPSHSLRFSCVRCCNSDDEKKKKLSEQSSWETKD 60

Query: 60  AEGRDYLYRLGKEADNMNIAVGQRAGVIDDLFAGNFLGKDSDIVFDYRQKATRSFQYLQG 119
           +EGRDYLYRLG EADNMNIAVGQRAG+IDD+FAGNFLG+DSDIVFDYRQK TRSFQYLQG
Sbjct: 61  SEGRDYLYRLGAEADNMNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQG 120

Query: 120 DYYIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFQAMGMEPVI 179
           DYYIAPLFMDKVV HI KNYL+HLLN KVPLILGIWGGKGQGKTFQTELIF+AMG+EPVI
Sbjct: 121 DYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVI 180

Query: 180 MSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 239
           MSAGELESE AGEPGRLIRERYRTAS+VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ
Sbjct: 181 MSAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 240

Query: 240 IVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQP 299
           IVVGTLMNL DNPTRVS+GQDWRE+D+TNRIPIIVTGND STIYAPLIRDGRMDKFYWQP
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQP 300

Query: 300 NREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGV 359
           N+EDI NIV RMYEKDGISRDEVE++V TFPNQALDFYGALRSRTYD+SILKWVDDIGG 
Sbjct: 301 NQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGA 360

Query: 360 ENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYMKNMED 417
           E+F SK LKRRKDQNLPVFIPPEQT+DALLESGYSL+KEQ+L+ME+KLSKEYMKN+ED
Sbjct: 361 ESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYMKNIED 418


>Medtr2g105480.3 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr2:45485184-45481680 | 20130731
          Length = 353

 Score =  602 bits (1553), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 290/352 (82%), Positives = 314/352 (89%), Gaps = 6/352 (1%)

Query: 6   MAKVLPLWIP-----VPNSKHAFR-SQLSXXXXXXXXXXCSSDNNNKKRLSQQSSWEAKD 59
           MAK+L L  P     +P S ++F   + S          C+SD+  KK+LS+QSSWE KD
Sbjct: 1   MAKLLLLVRPPYLSVIPTSSNSFSFKKPSHSLRFSCVRCCNSDDEKKKKLSEQSSWETKD 60

Query: 60  AEGRDYLYRLGKEADNMNIAVGQRAGVIDDLFAGNFLGKDSDIVFDYRQKATRSFQYLQG 119
           +EGRDYLYRLG EADNMNIAVGQRAG+IDD+FAGNFLG+DSDIVFDYRQK TRSFQYLQG
Sbjct: 61  SEGRDYLYRLGAEADNMNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQG 120

Query: 120 DYYIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFQAMGMEPVI 179
           DYYIAPLFMDKVV HI KNYL+HLLN KVPLILGIWGGKGQGKTFQTELIF+AMG+EPVI
Sbjct: 121 DYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVI 180

Query: 180 MSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 239
           MSAGELESE AGEPGRLIRERYRTAS+VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ
Sbjct: 181 MSAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 240

Query: 240 IVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQP 299
           IVVGTLMNL DNPTRVS+GQDWRE+D+TNRIPIIVTGND STIYAPLIRDGRMDKFYWQP
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQP 300

Query: 300 NREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILK 351
           N+EDI NIV RMYEKDGISRDEVE++V TFPNQALDFYGALRSRTYD+SILK
Sbjct: 301 NQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILK 352


>Medtr2g105480.2 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr2:45485184-45482533 | 20130731
          Length = 315

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/298 (81%), Positives = 263/298 (88%), Gaps = 6/298 (2%)

Query: 6   MAKVLPLWIP-----VPNSKHAFR-SQLSXXXXXXXXXXCSSDNNNKKRLSQQSSWEAKD 59
           MAK+L L  P     +P S ++F   + S          C+SD+  KK+LS+QSSWE KD
Sbjct: 1   MAKLLLLVRPPYLSVIPTSSNSFSFKKPSHSLRFSCVRCCNSDDEKKKKLSEQSSWETKD 60

Query: 60  AEGRDYLYRLGKEADNMNIAVGQRAGVIDDLFAGNFLGKDSDIVFDYRQKATRSFQYLQG 119
           +EGRDYLYRLG EADNMNIAVGQRAG+IDD+FAGNFLG+DSDIVFDYRQK TRSFQYLQG
Sbjct: 61  SEGRDYLYRLGAEADNMNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQG 120

Query: 120 DYYIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFQAMGMEPVI 179
           DYYIAPLFMDKVV HI KNYL+HLLN KVPLILGIWGGKGQGKTFQTELIF+AMG+EPVI
Sbjct: 121 DYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVI 180

Query: 180 MSAGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 239
           MSAGELESE AGEPGRLIRERYRTAS+VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ
Sbjct: 181 MSAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 240

Query: 240 IVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYW 297
           IVVGTLMNL DNPTRVS+GQDWRE+D+TNRIPIIVTGND STIYAPLIRDGRMDKFYW
Sbjct: 241 IVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYW 298


>Medtr3g068030.1 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr3:30668380-30664861 | 20130731
          Length = 436

 Score =  336 bits (862), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/346 (50%), Positives = 236/346 (68%), Gaps = 14/346 (4%)

Query: 74  DNMNIAVGQRAGVIDDLF-AGNFLGKDSDIVFDYRQKATRSFQY----LQGDYYIAPLFM 128
           D  +I  G+  G++D +F A    G    ++  Y   +T   QY        +YIAP FM
Sbjct: 82  DQQDITRGK--GMVDSVFQAPQDTGTHYAVMSSYEYLSTGLKQYNFDNTMDGFYIAPAFM 139

Query: 129 DKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFQAMGMEPVIMSAGELESE 188
           DK+V HI KN+L  L N+KVPLILG+WGGKGQGK+FQ EL+F  MG+ P++MSAGELES 
Sbjct: 140 DKLVVHITKNFLT-LPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESG 198

Query: 189 RAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMN 247
            AGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G  TQ TVNNQ+V  TLMN
Sbjct: 199 NAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 257

Query: 248 LSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPNREDIQNI 307
           ++DNPT V +   + + D   R+PIIVTGNDFST+YAPLIRDGRM+KFYW P RED   +
Sbjct: 258 IADNPTNVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 316

Query: 308 VHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVENFGSKIL 367
              ++  D I++D++ +IVDTFP Q++DF+GALR+R YD  + KWV  + G+E  G K++
Sbjct: 317 CIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GIETIGKKLV 375

Query: 368 KRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYMK 413
             +     PVF  P+ T++ LLE G  L+ EQE V   +L+ +Y++
Sbjct: 376 NSK--DGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLE 419


>Medtr3g068030.2 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr3:30668031-30664861 | 20130731
          Length = 422

 Score =  336 bits (861), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 174/346 (50%), Positives = 236/346 (68%), Gaps = 14/346 (4%)

Query: 74  DNMNIAVGQRAGVIDDLF-AGNFLGKDSDIVFDYRQKATRSFQY----LQGDYYIAPLFM 128
           D  +I  G+  G++D +F A    G    ++  Y   +T   QY        +YIAP FM
Sbjct: 68  DQQDITRGK--GMVDSVFQAPQDTGTHYAVMSSYEYLSTGLKQYNFDNTMDGFYIAPAFM 125

Query: 129 DKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFQAMGMEPVIMSAGELESE 188
           DK+V HI KN+L  L N+KVPLILG+WGGKGQGK+FQ EL+F  MG+ P++MSAGELES 
Sbjct: 126 DKLVVHITKNFLT-LPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESG 184

Query: 189 RAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMN 247
            AGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G  TQ TVNNQ+V  TLMN
Sbjct: 185 NAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 243

Query: 248 LSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPNREDIQNI 307
           ++DNPT V +   + + D   R+PIIVTGNDFST+YAPLIRDGRM+KFYW P RED   +
Sbjct: 244 IADNPTNVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 302

Query: 308 VHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVENFGSKIL 367
              ++  D I++D++ +IVDTFP Q++DF+GALR+R YD  + KWV  + G+E  G K++
Sbjct: 303 CIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GIETIGKKLV 361

Query: 368 KRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYMK 413
             +     PVF  P+ T++ LLE G  L+ EQE V   +L+ +Y++
Sbjct: 362 NSK--DGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLE 405


>Medtr4g021210.1 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr4:6855999-6852279 | 20130731
          Length = 476

 Score =  336 bits (861), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 160/292 (54%), Positives = 216/292 (73%), Gaps = 7/292 (2%)

Query: 122 YIAPLFMDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFQAMGMEPVIMS 181
           YIAP FMDK+V HI KN+L +L N+K+PLILGIWGGKGQGK+FQ EL+F  MG+ P++MS
Sbjct: 134 YIAPAFMDKLVVHITKNFL-NLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGISPIMMS 192

Query: 182 AGELESERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 240
           AGELES  AGEP +LIR+RYR AS +++ +GKM CL IND+DAG GR G  TQ TVNNQ+
Sbjct: 193 AGELESGNAGEPAKLIRQRYREASDIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 251

Query: 241 VVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPN 300
           V  TLMN++DNPT V +   + + +   R+PIIVTGNDFST+YAPLIRDGRM+KFYW P 
Sbjct: 252 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 310

Query: 301 REDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVE 360
           R+D   +   ++  DG+ +D++ +IVDTFP Q++DF+GALR+R YD  +  W+  I GVE
Sbjct: 311 RDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRNWISGI-GVE 369

Query: 361 NFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 412
           + G +++  +  +  P F  P+ T+D LLE G  L++EQE V   +L+ +Y+
Sbjct: 370 SIGKRLVNSK--EGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 419


>Medtr5g080450.1 | ribulose bisphosphate carboxylase/oxygenase
           activase | HC | chr5:34438020-34433065 | 20130731
          Length = 476

 Score =  330 bits (847), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/346 (49%), Positives = 235/346 (67%), Gaps = 14/346 (4%)

Query: 74  DNMNIAVGQRAGVIDDLF-AGNFLGKDSDIVFDYRQKATRSFQY----LQGDYYIAPLFM 128
           D  +I  G+  G++D +F A    G    ++  Y   +T   QY        +YIAP FM
Sbjct: 82  DQQDITRGK--GMVDTVFQAPQDSGTHYAVMSSYEYISTGLRQYNLDNTMDGFYIAPAFM 139

Query: 129 DKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFQAMGMEPVIMSAGELESE 188
           DK+V HI KN+L  L N+KVPLILGIWGGKGQGK+FQ EL+F  MG+ P++MSAGELES 
Sbjct: 140 DKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQAELVFAKMGINPIMMSAGELESG 198

Query: 189 RAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMN 247
            AGEP +LIR+RYR AS +++ +GKM CL IND+DAG GR G  TQ TVNNQ+V  TLMN
Sbjct: 199 NAGEPAKLIRQRYREASDIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 257

Query: 248 LSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPNREDIQNI 307
           ++DNPT V +   + + +   R+PIIVTGNDFST+YAPLIRDGRM+KFYW P RED   +
Sbjct: 258 IADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 316

Query: 308 VHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVENFGSKIL 367
              ++  D +  ++V +IVDTFP Q++DF+GALR+R YD  + KW+  + G+E  G K++
Sbjct: 317 CKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIAGV-GIETIGKKLV 375

Query: 368 KRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYMK 413
             +  +  P F  P+ +++ LLE G  L++EQE V   +L+ +Y++
Sbjct: 376 NSK--EGPPTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLE 419