Miyakogusa Predicted Gene

Lj2g3v1203430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1203430.1 tr|F6HGF2|F6HGF2_VITVI DNA-directed RNA
polymerase OS=Vitis vinifera GN=VIT_01s0010g00690 PE=3
SV=1,69.58,0,RNA_pol,DNA-directed RNA polymerase, phage-type;
seg,NULL; DNA/RNA polymerases,NULL; no description,,CUFF.36494.1
         (990 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g065900.1 | DNA-directed RNA polymerase-like protein | HC ...  1118   0.0  
Medtr7g017440.1 | leguminosin group485 secreted peptide | HC | c...   893   0.0  
Medtr8g065960.1 | DNA-directed RNA polymerase | HC | chr8:274041...   296   9e-80

>Medtr8g065900.1 | DNA-directed RNA polymerase-like protein | HC |
           chr8:27401434-27394114 | 20130731
          Length = 727

 Score = 1118 bits (2891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/680 (77%), Positives = 593/680 (87%), Gaps = 1/680 (0%)

Query: 312 SSLIKQQKMQQVMGIIKGLDDWKPWGQEARAKVGCRVMQLLIETAYIQSPVSQLGGSPPD 371
           +SLIK+QK QQ +GI+KG D  KPWGQEA+ KVG R++QLLIETAY++ P ++ G   PD
Sbjct: 48  ASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPD 107

Query: 372 IRPAFKHTFKTAMADSQKDIRRYGIIECDPLVTKGLEKSAKNMVIPYLPMLVPPNNWTRY 431
           I PAFKHT KT   DS    RRYG+IECDP++ KGLEK+A+NMVIPY+PMLVPPNNW  Y
Sbjct: 108 IFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGY 167

Query: 432 DKGAYLFLPSYVMRTHGAKQQCEAVKRAPYNQLEPIFEALDSLGNTKWRINQRLLDVISQ 491
           DKGAYLFLPSYVMR HGAKQQ +A+K AP NQL+ IFEAL++LGNTKWR+N+ +L VI Q
Sbjct: 168 DKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQ 227

Query: 492 IWTSGGRLADLVDRDDVXXXXXXXXXXXXXIRKWKRQVKTIMKENNERHSQRCEIELKLA 551
           IW +GGR+ADLVDRDD+             IRKWK +VK + KENNERHSQRC+IELKLA
Sbjct: 228 IWANGGRVADLVDRDDLPLPEELDTEDESEIRKWKWKVKNVKKENNERHSQRCDIELKLA 287

Query: 552 VARKMKEEKGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKI 611
           VARK+KEE GFYYPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK GL+WLKI
Sbjct: 288 VARKLKEEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKKGLQWLKI 347

Query: 612 HLANLYA-GGVDKLCYESRVAFTENHLDDVFDSADRPLEGRRWWLEAEDPLQCLAACINL 670
           HLANLYA GGVDKL Y+ RVAFTE+HLDD+FDSADRPLEG+RWWL+AEDP QCLAACINL
Sbjct: 348 HLANLYATGGVDKLSYDGRVAFTEDHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACINL 407

Query: 671 SEALRSPTPETTISHVPVHMDGSCNGLQHYAALGRDKLGAAAVNLVRGDRPADVYSGIAS 730
           SEALRSP PE T+SH+PVH DGSCNGLQHYAALGRDKLGA+AVNLV GD+PADVYSGIA+
Sbjct: 408 SEALRSPNPEATLSHMPVHQDGSCNGLQHYAALGRDKLGASAVNLVGGDKPADVYSGIAA 467

Query: 731 RVLEIMRKDAEKDPETNSXXXXXXXXXXQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLK 790
           RVL+IM++DA KDP T+           QVDRKLVKQTVMTSVYGVTY+GARDQIKRRLK
Sbjct: 468 RVLQIMKRDALKDPATDPHALHARRLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 527

Query: 791 ERCAIEDDSELFSASCYAAKTTLTALEEMFEAARSIMSWLADCAKVIASTNEPVRWTTPI 850
           ERCA+EDDSELF+ASCYAAKTTLTALEEMFEAARSIM WL DCAKVIA TN+ VRW TP+
Sbjct: 528 ERCAVEDDSELFAASCYAAKTTLTALEEMFEAARSIMGWLGDCAKVIACTNQAVRWVTPL 587

Query: 851 GLPAVQPYRQIGRSIIKTSLQVLSLRRETDKVLVKRQSTAFPPNFVHSLDGSHMMMTAVA 910
           GLP VQPYR++GR +IKTSLQVL+L+RETDKV+VKRQ TAFPPNFVHSLDGSHMMMTAVA
Sbjct: 588 GLPVVQPYREVGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 647

Query: 911 CKKAGLDFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQKSFPKLNFPP 970
           CK+AG++FAGVHDSYWTHACDV+EMNRILREKFVELYE PILENLLE+F+K+FP L FPP
Sbjct: 648 CKQAGMNFAGVHDSYWTHACDVEEMNRILREKFVELYETPILENLLENFEKTFPNLKFPP 707

Query: 971 LPERGDFDLREVLNSQYFFN 990
           LPERGD DL+EVL S YFFN
Sbjct: 708 LPERGDLDLQEVLKSPYFFN 727


>Medtr7g017440.1 | leguminosin group485 secreted peptide | HC |
           chr7:5556630-5564677 | 20130731
          Length = 566

 Score =  893 bits (2307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/565 (75%), Positives = 479/565 (84%)

Query: 426 NNWTRYDKGAYLFLPSYVMRTHGAKQQCEAVKRAPYNQLEPIFEALDSLGNTKWRINQRL 485
            ++  +DKG YLFLPSYVMRTHG KQQ EAVK+ P  QLEP+FEALD+LGNTKWR+N ++
Sbjct: 2   THFCSFDKGGYLFLPSYVMRTHGVKQQREAVKKVPRKQLEPVFEALDTLGNTKWRVNNKV 61

Query: 486 LDVISQIWTSGGRLADLVDRDDVXXXXXXXXXXXXXIRKWKRQVKTIMKENNERHSQRCE 545
           L V+ +IW  GGRLA LVDR+DV              +KWK +VK++ KEN ER+S RC+
Sbjct: 62  LSVVDRIWAGGGRLAGLVDRNDVEIPEELESDDEAEKKKWKWKVKSVKKENRERYSLRCD 121

Query: 546 IELKLAVARKMKEEKGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSG 605
            ELKLAVARKMK+E+ FYYPHN+DFRGRAYPMHP+LNHLGSD+CRGILEFA+GRPLGKSG
Sbjct: 122 TELKLAVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDVCRGILEFADGRPLGKSG 181

Query: 606 LRWLKIHLANLYAGGVDKLCYESRVAFTENHLDDVFDSADRPLEGRRWWLEAEDPLQCLA 665
           L WLKIHLANLY GGVDKL  E R+ F ENHLD++FDSA++P+EGRRWWL AEDP Q LA
Sbjct: 182 LHWLKIHLANLYGGGVDKLSNEGRITFVENHLDEIFDSAEQPMEGRRWWLNAEDPFQFLA 241

Query: 666 ACINLSEALRSPTPETTISHVPVHMDGSCNGLQHYAALGRDKLGAAAVNLVRGDRPADVY 725
           AC+ L+EAL+  TPE+ ISH+PVH DGSCNGLQHYAALGRDKLGAAAVNLV G++PADVY
Sbjct: 242 ACMTLTEALKISTPESFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVY 301

Query: 726 SGIASRVLEIMRKDAEKDPETNSXXXXXXXXXXQVDRKLVKQTVMTSVYGVTYVGARDQI 785
           SGIA+RVL IM+ DA+KDPET S          QVDRKLVKQTVMTSVYGVTY+GAR+QI
Sbjct: 302 SGIAARVLAIMKIDAQKDPETFSEARHAKILVNQVDRKLVKQTVMTSVYGVTYIGAREQI 361

Query: 786 KRRLKERCAIEDDSELFSASCYAAKTTLTALEEMFEAARSIMSWLADCAKVIASTNEPVR 845
           KRRLKER AI DDSELF A+CYAAK TLTAL+EMFE ARSIM+WL DCAKVIAS NEPV 
Sbjct: 362 KRRLKERDAIADDSELFGAACYAAKVTLTALQEMFEGARSIMNWLGDCAKVIASENEPVC 421

Query: 846 WTTPIGLPAVQPYRQIGRSIIKTSLQVLSLRRETDKVLVKRQSTAFPPNFVHSLDGSHMM 905
           WTTP+GLP VQPYR  GR I+KTSLQ+L+L+RETDKV+VKRQ TAFPPNFVHSLDGSHMM
Sbjct: 422 WTTPLGLPVVQPYRYQGRHIVKTSLQMLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMM 481

Query: 906 MTAVACKKAGLDFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQKSFPK 965
           MTA+ACKKAGL FAGVHDSYWTHACDVD MNRILREKFVELYE PILENLLESFQ+SFP 
Sbjct: 482 MTAIACKKAGLSFAGVHDSYWTHACDVDNMNRILREKFVELYETPILENLLESFQESFPS 541

Query: 966 LNFPPLPERGDFDLREVLNSQYFFN 990
           L FPPLPERG+ DL EVL S YFFN
Sbjct: 542 LEFPPLPERGNLDLNEVLESPYFFN 566


>Medtr8g065960.1 | DNA-directed RNA polymerase | HC |
           chr8:27404131-27403218 | 20130731
          Length = 259

 Score =  296 bits (757), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 160/264 (60%), Positives = 191/264 (72%), Gaps = 17/264 (6%)

Query: 1   MWAHLAKRTFQRNFKLPSYSPST-RFSQHSNFLEKILQPRNQSTCPVSGSAQVGVFTSIN 59
           MW+ LAKR   R F LPS S ++ RFS   NF EKIL+       P S  +QVG+FTS  
Sbjct: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRH------PFSRFSQVGIFTSEY 54

Query: 60  ELGRSNFSLFEYPFGLNS-SLKLARGYASVAEAIVSSSDTEEDCSGGANEVK----QMVK 114
           +LGRSNFS  E+PF  +S SL   R Y SVA   + S+DTE+DCSG    V+    QMV 
Sbjct: 55  KLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVI 114

Query: 115 KEVKGKPLLDRKAKYKDT-----MLRKRQVKMETEAWEEAAKEYQELLEDICEQKLVPNL 169
           +E K  P L+ K K K+      MLR+RQ+K+ETEAWEEAA+EYQELLED+ EQKL PNL
Sbjct: 115 EEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNL 174

Query: 170 PYMKSLFLGWFEPLKSAIVAEQEVCKKSHRKMTHAPYFNDLPADKMAVITMHKLMGLLMT 229
           PYMKSLFLGWFEPLK+AI A+QE+CK +  +++HAPYFN+LP D MAVITMHKLMGLLMT
Sbjct: 175 PYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMT 234

Query: 230 NHNGIGCARVIHAALQIGEAIENE 253
           N NG+G ARVI AA QIGEAIE+E
Sbjct: 235 NSNGVGSARVIQAACQIGEAIEHE 258