Miyakogusa Predicted Gene

Lj2g3v1196740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1196740.1 Non Characterized Hit- tr|I1LTT3|I1LTT3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2256
PE=,72.17,2e-19,seg,NULL; Ribosomal_60s,Ribosomal protein 60S; 60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL,CUFF.36614.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g085085.2 | 60S acidic ribosomal protein | HC | chr2:36125...    83   4e-17
Medtr2g085085.1 | 60S acidic ribosomal protein | HC | chr2:36125...    83   4e-17
Medtr0227s0020.1 | 60S acidic ribosomal protein | HC | scaffold0...    83   7e-17
Medtr1g060600.1 | 60S acidic ribosomal protein | HC | chr1:26385...    74   2e-14
Medtr2g085105.1 | ribosomal protein | LC | chr2:36132354-3613060...    50   4e-07

>Medtr2g085085.2 | 60S acidic ribosomal protein | HC |
          chr2:36125832-36124476 | 20130731
          Length = 113

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 46/62 (74%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MK++AAYLLAVLGGN SPSA DLK ILGSVG             EVKGKDFAELIASGRE
Sbjct: 1  MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>Medtr2g085085.1 | 60S acidic ribosomal protein | HC |
          chr2:36125832-36124476 | 20130731
          Length = 113

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 46/62 (74%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MK++AAYLLAVLGGN SPSA DLK ILGSVG             EVKGKDFAELIASGRE
Sbjct: 1  MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>Medtr0227s0020.1 | 60S acidic ribosomal protein | HC |
          scaffold0227:7789-5926 | 20130731
          Length = 113

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 47/62 (75%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MK++AAY+LAVLGGNS+PSADD+K IL SVG             EVKGKDFAELIASGRE
Sbjct: 1  MKIIAAYMLAVLGGNSAPSADDIKTILSSVGVEAEDSNIELLLSEVKGKDFAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>Medtr1g060600.1 | 60S acidic ribosomal protein | HC |
          chr1:26385779-26387969 | 20130731
          Length = 112

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 46/62 (74%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGSVGXXXXXXXXXXXXKEVKGKDFAELIASGRE 60
          MKVVAAYLLAVLGG+++PSA  +K+ILGSVG             E+KGKD AE+IASGRE
Sbjct: 1  MKVVAAYLLAVLGGDNTPSAKTIKDILGSVGADAEDNRIESFLSEIKGKDIAEVIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>Medtr2g085105.1 | ribosomal protein | LC | chr2:36132354-36130601
          | 20130731
          Length = 51

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 25/29 (86%)

Query: 1  MKVVAAYLLAVLGGNSSPSADDLKNILGS 29
          MK++ AYLLAVLGGN SPSA DLK ILGS
Sbjct: 1  MKIIVAYLLAVLGGNQSPSAADLKQILGS 29