Miyakogusa Predicted Gene

Lj2g3v1196520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1196520.1 Non Characterized Hit- tr|C0HIK1|C0HIK1_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,67.14,2e-18,seg,NULL;
DUF2232,Protein of unknown function DUF2232, membrane,CUFF.36446.1
         (307 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g021510.1 | membrane protein | HC | chr6:7383365-7377596 |...   394   e-110
Medtr6g021510.2 | membrane protein | HC | chr6:7383365-7378227 |...   263   1e-70

>Medtr6g021510.1 | membrane protein | HC | chr6:7383365-7377596 |
           20130731
          Length = 278

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/238 (82%), Positives = 215/238 (90%), Gaps = 11/238 (4%)

Query: 70  RVSNIGVPVFSSXXXXXXXXXXXXVSPDLSPNGPVFQKTLQLVECSMFAALTGLVYFLSN 129
           RVSNI V +F++               DLSP G V+QKTLQLVECSMFAALTGLVYFLSN
Sbjct: 52  RVSNIEVAIFNNEEV-----------KDLSPEGEVYQKTLQLVECSMFAALTGLVYFLSN 100

Query: 130 SLAIENYFSCFFSLPIVISSMRWGVDAGRKTLVSTTILLFVLSGPVKALTYLLKHGIVGY 189
           +LAIENYFSCFFSLPIVISSMRWG+DAGRKT+V+TTILLFVLSGPVKALTYLLKHGIVGY
Sbjct: 101 ALAIENYFSCFFSLPIVISSMRWGIDAGRKTMVATTILLFVLSGPVKALTYLLKHGIVGY 160

Query: 190 TMGTLWRLETSWNLSIFLCTIVRALGSVGFVLVTSFLIRENILALITINIHASLTFVLTA 249
           TMGTLWRLETSW+LS+FLC IVR++G+VGFVL++SFLIRENILALITINIHASLTFVLTA
Sbjct: 161 TMGTLWRLETSWSLSVFLCAIVRSIGAVGFVLISSFLIRENILALITINIHASLTFVLTA 220

Query: 250 AGVNSIPSMNVIYTLFGTLVLINCGCFMFLLHMLYSVFLTRMGMKSSLKLPRWLERAI 307
           AGVNSIPSMN IYTLFG LVL+N GCFMFLLHMLYSVFLTRMGMKSSLKLPRWL++AI
Sbjct: 221 AGVNSIPSMNFIYTLFGILVLLNGGCFMFLLHMLYSVFLTRMGMKSSLKLPRWLKKAI 278


>Medtr6g021510.2 | membrane protein | HC | chr6:7383365-7378227 |
           20130731
          Length = 234

 Score =  263 bits (672), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/233 (62%), Positives = 161/233 (69%), Gaps = 28/233 (12%)

Query: 4   MNPLKTYQHSSSFFFS-ISKXXXXXXXXXXXXXXXXXXXXXXXXXXXRIKXXXXXXXXXX 62
           M PLKTYQH S F FS ISK                                        
Sbjct: 1   MIPLKTYQHRSPFIFSSISKPNPLHPHFLSLP----------------PSPPLKLPLKLK 44

Query: 63  XXXXXXXRVSNIGVPVFSSXXXXXXXXXXXXVSPDLSPNGPVFQKTLQLVECSMFAALTG 122
                  RVSNI V +F++               DLSP G V+QKTLQLVECSMFAALTG
Sbjct: 45  PCSFPLQRVSNIEVAIFNNEEVK-----------DLSPEGEVYQKTLQLVECSMFAALTG 93

Query: 123 LVYFLSNSLAIENYFSCFFSLPIVISSMRWGVDAGRKTLVSTTILLFVLSGPVKALTYLL 182
           LVYFLSN+LAIENYFSCFFSLPIVISSMRWG+DAGRKT+V+TTILLFVLSGPVKALTYLL
Sbjct: 94  LVYFLSNALAIENYFSCFFSLPIVISSMRWGIDAGRKTMVATTILLFVLSGPVKALTYLL 153

Query: 183 KHGIVGYTMGTLWRLETSWNLSIFLCTIVRALGSVGFVLVTSFLIRENILALI 235
           KHGIVGYTMGTLWRLETSW+LS+FLC IVR++G+VGFVL++SFLIRENILAL+
Sbjct: 154 KHGIVGYTMGTLWRLETSWSLSVFLCAIVRSIGAVGFVLISSFLIRENILALV 206