Miyakogusa Predicted Gene

Lj2g3v1196400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1196400.1 tr|Q9LI86|Q9LI86_ARATH At3g25590 OS=Arabidopsis
thaliana GN=At3g25590 PE=2 SV=1,31.81,9e-19,seg,NULL,gene.g41000.t1.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g472100.1 | hypothetical protein | HC | chr6:25932925-2593...   356   2e-98
Medtr6g046300.1 | pentatricopeptide (PPR) repeat protein | LC | ...    66   5e-11

>Medtr6g472100.1 | hypothetical protein | HC |
           chr6:25932925-25935230 | 20130731
          Length = 368

 Score =  356 bits (914), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 213/321 (66%), Positives = 236/321 (73%), Gaps = 29/321 (9%)

Query: 2   ISSNRNSCSTVEVGSVGRVSFLIENEKNV--ETPVQHLNAKATKLQDKTGEKTEEVVVLR 59
           I+SNRNSCS VEVGSVGRVSFLIENEKN     P QHLN+K    + +  E         
Sbjct: 72  ITSNRNSCS-VEVGSVGRVSFLIENEKNETNPNPFQHLNSKVKMQEKEEEEVVVLK---- 126

Query: 60  RSNSNCVEIKRNGFWRFGKLFRXXXXXXXXCGRSVGGFDERNEMWMVDHHGGVSRSRSLC 119
           RS+S+CV+IKR+GFWR GKLFR        CGRSVGGFDE+NEMW+VDHHGGVSRSRSLC
Sbjct: 127 RSSSSCVDIKRHGFWRIGKLFRKNKKNKD-CGRSVGGFDEKNEMWVVDHHGGVSRSRSLC 185

Query: 120 SFRGGGNGIFGSEDGGDSVLXXXXXXXXXXXXXXVNGGMMLESGRRSGYSEAEPRRSDFM 179
           SFRGG   IFGSEDGGDSVL              VNGG+MLESGRRSGYSEAEPRRSDF 
Sbjct: 186 SFRGGA--IFGSEDGGDSVLSGARSSISAARSSGVNGGLMLESGRRSGYSEAEPRRSDFF 243

Query: 180 MFESENGGRKSGLTDVDASFYNRRVFSLRESDFKGMDESSFIDLKLDYSSSEAKPEFSAA 239
            +E ENG RKSG+ ++D S YNRRVFSLRESDFKGMDESSFIDLKLDY SSE K      
Sbjct: 244 -YEYENG-RKSGVMEIDGSSYNRRVFSLRESDFKGMDESSFIDLKLDY-SSELK------ 294

Query: 240 KFGNMADTLSAFGSVRGGNFMVHDG--DGVLNSGGSCRITVNDRGVKRG-RKSMKGWRWI 296
               MADTLSAFGS+RGGNFM HD    G    GGSCR T+N+RG+KR  RKS+KGWRWI
Sbjct: 295 ----MADTLSAFGSIRGGNFMTHDAGGGGGGGDGGSCRFTMNERGIKRERRKSIKGWRWI 350

Query: 297 FRTHSNIASGRKKDEDLMFKT 317
           F+ HS   S RK+D+DLMFKT
Sbjct: 351 FKYHS---SSRKRDQDLMFKT 368


>Medtr6g046300.1 | pentatricopeptide (PPR) repeat protein | LC |
           chr6:16704461-16701708 | 20130731
          Length = 567

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%), Gaps = 3/47 (6%)

Query: 163 GRRSGYSEAEPRRSDFMMFESENGGRKSGLTDVDASFYNRRVFSLRE 209
           GRRSGYSEAEPRRSDF  +E EN GRKSG+ ++D S YNRR+FSLRE
Sbjct: 36  GRRSGYSEAEPRRSDF-FYEYEN-GRKSGVMEIDGS-YNRRLFSLRE 79