Miyakogusa Predicted Gene

Lj2g3v1194200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1194200.1 Non Characterized Hit- tr|I3TAR6|I3TAR6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,67.53,5e-17,seg,NULL,CUFF.36433.1
         (387 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g472100.1 | hypothetical protein | HC | chr6:25932925-2593...   445   e-125
Medtr6g046300.1 | pentatricopeptide (PPR) repeat protein | LC | ...    66   7e-11

>Medtr6g472100.1 | hypothetical protein | HC |
           chr6:25932925-25935230 | 20130731
          Length = 368

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/396 (68%), Positives = 296/396 (74%), Gaps = 37/396 (9%)

Query: 1   MKERNKGVVEAYNTNNDMDCYYSTSEF-HCKKHPSSSS---GGICAYCLKERLVKLVCSD 56
           MKERNKGV EAY+  NDMDCYYSTS+F  CKKHPSSSS   GGICAYCLKERLVKLVCSD
Sbjct: 1   MKERNKGV-EAYS--NDMDCYYSTSDFLPCKKHPSSSSSSSGGICAYCLKERLVKLVCSD 57

Query: 57  CGEQRLXXXXXXDEMISSNRNSCSTVEVGSVGRVSFLIENEKNV--ETPVQHLNAKATKL 114
           CGEQRL      DE I+SNRNSCS VEVGSVGRVSFLIENEKN     P QHLN+K    
Sbjct: 58  CGEQRLSSCSCSDE-ITSNRNSCS-VEVGSVGRVSFLIENEKNETNPNPFQHLNSKVKMQ 115

Query: 115 QDKTGEKTEEVVVLRRSNSNCVEIKRNGFWRFGKLFRXXXXXXXXCGRSVGGFDERNEMW 174
           + +  E         RS+S+CV+IKR+GFWR GKLFR        CGRSVGGFDE+NEMW
Sbjct: 116 EKEEEEVVVLK----RSSSSCVDIKRHGFWRIGKLFRKNKKNKD-CGRSVGGFDEKNEMW 170

Query: 175 MVDHHGGVSRSRSLCSFRGGGNGIFGSEDGGDSVLXXXXXXXXXXXXXXVNGGMMLESGR 234
           +VDHHGGVSRSRSLCSFRGG   IFGSEDGGDSVL              VNGG+MLESGR
Sbjct: 171 VVDHHGGVSRSRSLCSFRGGA--IFGSEDGGDSVLSGARSSISAARSSGVNGGLMLESGR 228

Query: 235 RSGYSEAEPRRSDFMMFESENGGRKSGLTDVDASFYNRRVFSLRESDFKGMDESSFIDLK 294
           RSGYSEAEPRRSDF  +E ENG RKSG+ ++D S YNRRVFSLRESDFKGMDESSFIDLK
Sbjct: 229 RSGYSEAEPRRSDFF-YEYENG-RKSGVMEIDGSSYNRRVFSLRESDFKGMDESSFIDLK 286

Query: 295 LDYSSSEAKPEFSAAKFGNMADTLSAFGSVRGGNFMVHDG--DGVLNSGGSCRITVNDRG 352
           LDY SSE K          MADTLSAFGS+RGGNFM HD    G    GGSCR T+N+RG
Sbjct: 287 LDY-SSELK----------MADTLSAFGSIRGGNFMTHDAGGGGGGGDGGSCRFTMNERG 335

Query: 353 VKRG-RKSMKGWRWIFRTHSNIASGRKKDEDLMFKT 387
           +KR  RKS+KGWRWIF+ HS   S RK+D+DLMFKT
Sbjct: 336 IKRERRKSIKGWRWIFKYHS---SSRKRDQDLMFKT 368


>Medtr6g046300.1 | pentatricopeptide (PPR) repeat protein | LC |
           chr6:16704461-16701708 | 20130731
          Length = 567

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%), Gaps = 3/47 (6%)

Query: 233 GRRSGYSEAEPRRSDFMMFESENGGRKSGLTDVDASFYNRRVFSLRE 279
           GRRSGYSEAEPRRSDF  +E EN GRKSG+ ++D S YNRR+FSLRE
Sbjct: 36  GRRSGYSEAEPRRSDF-FYEYEN-GRKSGVMEIDGS-YNRRLFSLRE 79