Miyakogusa Predicted Gene

Lj2g3v1172610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1172610.1 tr|F2CV11|F2CV11_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,33.96,0.000000000002,Sm-like ribonucleoproteins,Like-Sm (LSM)
domain; LSM14,Lsm14 N-terminal; seg,NULL; SCD6
PROTEIN-RELA,CUFF.36432.1
         (480 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g093860.1 | protein decapping-like protein | HC | chr1:421...   251   2e-66
Medtr5g025630.1 | protein decapping-like protein, putative | HC ...   127   3e-29

>Medtr1g093860.1 | protein decapping-like protein | HC |
           chr1:42121267-42114291 | 20130731
          Length = 647

 Score =  251 bits (640), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/203 (67%), Positives = 146/203 (71%), Gaps = 5/203 (2%)

Query: 19  YIGCLISLTSKSEIRYEGILYNINTDESSIGLRNVRSFGTEGRKMDGQQIPPSDKVYEYI 78
           YIGCLISLTSKSEIRYEG+LYNINTDESSIGL+NVRSFGTEGRK DG QI P DKVYEYI
Sbjct: 16  YIGCLISLTSKSEIRYEGVLYNINTDESSIGLKNVRSFGTEGRKKDGPQILPGDKVYEYI 75

Query: 79  LFRGSDIKDLQVKSSPPVQPTPQVNIDPAIIQSHYPRPATTSTSLPSAVSGSLTDLSSH- 137
           LFRG+DIKDLQVKSSPPVQP    N DPAIIQS YPR ATTSTSLP AVSGSLTD S + 
Sbjct: 76  LFRGTDIKDLQVKSSPPVQPAVPTNTDPAIIQSQYPRLATTSTSLP-AVSGSLTDASPNP 134

Query: 138 HTAQLGLPGSNFQGPLPLYQPGGNIXXXXXXX-XXXXXXXXXXMPVYWQGYYGAXXXXXX 196
           +T QLG PGSNFQG  PLYQPGGN+                  MP+YWQGYYGA      
Sbjct: 135 NTTQLGHPGSNFQG--PLYQPGGNVVSWGASSPAPNANGGGLAMPMYWQGYYGAPNGLPQ 192

Query: 197 XXXXXXXXXXXXXAMHSSIQQPM 219
                        +M SS+QQPM
Sbjct: 193 LHQQSLFRPPPGLSMPSSMQQPM 215



 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 91/178 (51%), Gaps = 56/178 (31%)

Query: 301 EILPVALANKATNVSTSAVSLASNFPSLTPLTNSGPDVNAIVPPVSSKPNAISGSGLLYQ 360
           E    +++NKA  VS  A +L +N PSL P T+ G D+NA V P+++KPNAISGS L YQ
Sbjct: 322 ETFQASVSNKAPTVSLPAATLGANLPSLAPFTSGGSDINAAV-PLANKPNAISGSSLSYQ 380

Query: 361 TVSQFSPALMPPVSSKPNVISGSSLPYQTVSQFSSALTPPVSSKPNAISGSGLPNQTVSQ 420
           TV Q                                +TP       +I GS         
Sbjct: 381 TVPQ-------------------------------QMTP-------SIVGS--------- 393

Query: 421 FSPAVVGSSHSIHTDTPAPALVTPGQLLQPGPTKVSYAQPSQAPNKDVEVVQVSSTSS 478
                   S+S+ T+ P P+LVTP QLLQ G T  + ++PSQ P+KDVEVVQVSSTS+
Sbjct: 394 --------SNSVRTEPPVPSLVTPAQLLQSGQTVAASSKPSQTPHKDVEVVQVSSTSA 443


>Medtr5g025630.1 | protein decapping-like protein, putative | HC |
           chr5:10439500-10444540 | 20130731
          Length = 386

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 19  YIGCLISLTSKSEIRYEGILYNINTDESSIGLRNVRSFGTEGRKMDGQQIPPSDKVYEYI 78
           YIGC ISL S  +IRYEG+LY +N  +S+IGL NVR +GTEGR+ DGQQ+PPSDKVYE I
Sbjct: 19  YIGCFISLISNYDIRYEGVLYFLNVQDSTIGLNNVRCYGTEGRRKDGQQVPPSDKVYECI 78

Query: 79  LFRGSDIKDLQVKS-SPPVQPTPQVNIDPAIIQ 110
           LFRGSDIKDLQ+KS S       Q++ D AI+Q
Sbjct: 79  LFRGSDIKDLQIKSPSTSGWAEEQISSDQAIMQ 111