Miyakogusa Predicted Gene

Lj2g3v1168730.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1168730.4 Non Characterized Hit- tr|I1MRF4|I1MRF4_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,51.35,0.00000000005,seg,NULL,CUFF.36336.4
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g118845.1 | chromatin remodeling factor, putative | HC | c...    67   4e-12
Medtr4g118845.2 | chromatin remodeling factor, putative | HC | c...    67   5e-12
Medtr2g020000.1 | chromatin remodeling factor, putative | HC | c...    67   5e-12

>Medtr4g118845.1 | chromatin remodeling factor, putative | HC |
           chr4:49251792-49260219 | 20130731
          Length = 1063

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 43/74 (58%), Gaps = 18/74 (24%)

Query: 1   MTRLLYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAIN 42
           MTRLL ILEDYLMF GYQ+ RI+ N  G+ R ASI  F                  + IN
Sbjct: 514 MTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGIN 573

Query: 43  LATADIDILYHSDW 56
           LATAD+ ILY SDW
Sbjct: 574 LATADVVILYDSDW 587


>Medtr4g118845.2 | chromatin remodeling factor, putative | HC |
           chr4:49253207-49260120 | 20130731
          Length = 876

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 43/74 (58%), Gaps = 18/74 (24%)

Query: 1   MTRLLYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAIN 42
           MTRLL ILEDYLMF GYQ+ RI+ N  G+ R ASI  F                  + IN
Sbjct: 327 MTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGIN 386

Query: 43  LATADIDILYHSDW 56
           LATAD+ ILY SDW
Sbjct: 387 LATADVVILYDSDW 400


>Medtr2g020000.1 | chromatin remodeling factor, putative | HC |
           chr2:6619806-6610735 | 20130731
          Length = 1066

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 43/74 (58%), Gaps = 18/74 (24%)

Query: 1   MTRLLYILEDYLMFYGYQHSRIEDNIDGEHRHASIAVF------------------VAIN 42
           MTRLL ILEDYLMF GYQ+ RI+ N  G+ R ASI  F                  + IN
Sbjct: 517 MTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 576

Query: 43  LATADIDILYHSDW 56
           LATAD+ ILY SDW
Sbjct: 577 LATADVVILYDSDW 590