Miyakogusa Predicted Gene

Lj2g3v1106410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1106410.1 tr|A8NG41|A8NG41_COPC7 Transcription/repair
factor TFIIH subunit Tfb3 OS=Coprinopsis cinerea
(strain,59.49,6e-17,seg,NULL; MAT1,Cdk-activating kinase assembly
factor MAT1, centre; TRANSCRIPTION/REPAIR FACTOR TFIIH,CUFF.36273.1
         (186 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g006900.3 | CDK-activating kinase assembly factor MAT1, pu...   239   9e-64
Medtr6g006900.2 | CDK-activating kinase assembly factor MAT1, pu...   239   9e-64
Medtr6g006900.1 | CDK-activating kinase assembly factor MAT1, pu...   239   9e-64
Medtr6g006900.4 | CDK-activating kinase assembly factor MAT1, pu...   239   9e-64
Medtr6g006900.5 | CDK-activating kinase assembly factor MAT1, pu...   152   2e-37
Medtr6g006900.6 | CDK-activating kinase assembly factor MAT1, pu...   152   2e-37

>Medtr6g006900.3 | CDK-activating kinase assembly factor MAT1,
           putative | HC | chr6:1260011-1265928 | 20130731
          Length = 185

 Score =  239 bits (611), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 138/190 (72%), Gaps = 9/190 (4%)

Query: 1   MVISSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAIE 60
           MVISSTNPH KEIAIR+RIASIFNKREDDFPSL+EYNDYLEEVEDMTFNLIEG+DVAAIE
Sbjct: 1   MVISSTNPHYKEIAIRKRIASIFNKREDDFPSLKEYNDYLEEVEDMTFNLIEGIDVAAIE 60

Query: 61  AKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXND---VGASQDFGAVPQGQY 117
           A+IAKYQEENSEQIM+N                       ND     +   FGAVPQGQY
Sbjct: 61  ARIAKYQEENSEQIMINRARKAEELAAAMATSKGQPAQTDNDDANPNSQAGFGAVPQGQY 120

Query: 118 APTFA-GQPRPTGMAPQPLPLGGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRAL 176
           APT A GQPRPTGM PQPLPLGG D  GY  +++ET+R           WS+EISRKRAL
Sbjct: 121 APTIAGGQPRPTGMGPQPLPLGGGDA-GYVVENEETLR----RQARAGGWSIEISRKRAL 175

Query: 177 EEAFGSMWVC 186
           EEAFGS+W+ 
Sbjct: 176 EEAFGSIWIS 185


>Medtr6g006900.2 | CDK-activating kinase assembly factor MAT1,
           putative | HC | chr6:1260011-1265928 | 20130731
          Length = 185

 Score =  239 bits (611), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 138/190 (72%), Gaps = 9/190 (4%)

Query: 1   MVISSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAIE 60
           MVISSTNPH KEIAIR+RIASIFNKREDDFPSL+EYNDYLEEVEDMTFNLIEG+DVAAIE
Sbjct: 1   MVISSTNPHYKEIAIRKRIASIFNKREDDFPSLKEYNDYLEEVEDMTFNLIEGIDVAAIE 60

Query: 61  AKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXND---VGASQDFGAVPQGQY 117
           A+IAKYQEENSEQIM+N                       ND     +   FGAVPQGQY
Sbjct: 61  ARIAKYQEENSEQIMINRARKAEELAAAMATSKGQPAQTDNDDANPNSQAGFGAVPQGQY 120

Query: 118 APTFA-GQPRPTGMAPQPLPLGGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRAL 176
           APT A GQPRPTGM PQPLPLGG D  GY  +++ET+R           WS+EISRKRAL
Sbjct: 121 APTIAGGQPRPTGMGPQPLPLGGGDA-GYVVENEETLR----RQARAGGWSIEISRKRAL 175

Query: 177 EEAFGSMWVC 186
           EEAFGS+W+ 
Sbjct: 176 EEAFGSIWIS 185


>Medtr6g006900.1 | CDK-activating kinase assembly factor MAT1,
           putative | HC | chr6:1260011-1265928 | 20130731
          Length = 185

 Score =  239 bits (611), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 138/190 (72%), Gaps = 9/190 (4%)

Query: 1   MVISSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAIE 60
           MVISSTNPH KEIAIR+RIASIFNKREDDFPSL+EYNDYLEEVEDMTFNLIEG+DVAAIE
Sbjct: 1   MVISSTNPHYKEIAIRKRIASIFNKREDDFPSLKEYNDYLEEVEDMTFNLIEGIDVAAIE 60

Query: 61  AKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXND---VGASQDFGAVPQGQY 117
           A+IAKYQEENSEQIM+N                       ND     +   FGAVPQGQY
Sbjct: 61  ARIAKYQEENSEQIMINRARKAEELAAAMATSKGQPAQTDNDDANPNSQAGFGAVPQGQY 120

Query: 118 APTFA-GQPRPTGMAPQPLPLGGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRAL 176
           APT A GQPRPTGM PQPLPLGG D  GY  +++ET+R           WS+EISRKRAL
Sbjct: 121 APTIAGGQPRPTGMGPQPLPLGGGDA-GYVVENEETLR----RQARAGGWSIEISRKRAL 175

Query: 177 EEAFGSMWVC 186
           EEAFGS+W+ 
Sbjct: 176 EEAFGSIWIS 185


>Medtr6g006900.4 | CDK-activating kinase assembly factor MAT1,
           putative | HC | chr6:1260011-1265928 | 20130731
          Length = 185

 Score =  239 bits (611), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 138/190 (72%), Gaps = 9/190 (4%)

Query: 1   MVISSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAIE 60
           MVISSTNPH KEIAIR+RIASIFNKREDDFPSL+EYNDYLEEVEDMTFNLIEG+DVAAIE
Sbjct: 1   MVISSTNPHYKEIAIRKRIASIFNKREDDFPSLKEYNDYLEEVEDMTFNLIEGIDVAAIE 60

Query: 61  AKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXND---VGASQDFGAVPQGQY 117
           A+IAKYQEENSEQIM+N                       ND     +   FGAVPQGQY
Sbjct: 61  ARIAKYQEENSEQIMINRARKAEELAAAMATSKGQPAQTDNDDANPNSQAGFGAVPQGQY 120

Query: 118 APTFA-GQPRPTGMAPQPLPLGGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRAL 176
           APT A GQPRPTGM PQPLPLGG D  GY  +++ET+R           WS+EISRKRAL
Sbjct: 121 APTIAGGQPRPTGMGPQPLPLGGGDA-GYVVENEETLR----RQARAGGWSIEISRKRAL 175

Query: 177 EEAFGSMWVC 186
           EEAFGS+W+ 
Sbjct: 176 EEAFGSIWIS 185


>Medtr6g006900.5 | CDK-activating kinase assembly factor MAT1,
           putative | HC | chr6:1260011-1265928 | 20130731
          Length = 140

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/145 (57%), Positives = 94/145 (64%), Gaps = 9/145 (6%)

Query: 46  MTFNLIEGVDVAAIEAKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXND--- 102
           MTFNLIEG+DVAAIEA+IAKYQEENSEQIM+N                       ND   
Sbjct: 1   MTFNLIEGIDVAAIEARIAKYQEENSEQIMINRARKAEELAAAMATSKGQPAQTDNDDAN 60

Query: 103 VGASQDFGAVPQGQYAPTFA-GQPRPTGMAPQPLPLGGSDMPGYAGDDDETMRLXXXXXX 161
             +   FGAVPQGQYAPT A GQPRPTGM PQPLPLGG D  GY  +++ET+R       
Sbjct: 61  PNSQAGFGAVPQGQYAPTIAGGQPRPTGMGPQPLPLGGGDA-GYVVENEETLR----RQA 115

Query: 162 XXXXWSLEISRKRALEEAFGSMWVC 186
               WS+EISRKRALEEAFGS+W+ 
Sbjct: 116 RAGGWSIEISRKRALEEAFGSIWIS 140


>Medtr6g006900.6 | CDK-activating kinase assembly factor MAT1,
           putative | HC | chr6:1260011-1265928 | 20130731
          Length = 140

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/145 (57%), Positives = 94/145 (64%), Gaps = 9/145 (6%)

Query: 46  MTFNLIEGVDVAAIEAKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXND--- 102
           MTFNLIEG+DVAAIEA+IAKYQEENSEQIM+N                       ND   
Sbjct: 1   MTFNLIEGIDVAAIEARIAKYQEENSEQIMINRARKAEELAAAMATSKGQPAQTDNDDAN 60

Query: 103 VGASQDFGAVPQGQYAPTFA-GQPRPTGMAPQPLPLGGSDMPGYAGDDDETMRLXXXXXX 161
             +   FGAVPQGQYAPT A GQPRPTGM PQPLPLGG D  GY  +++ET+R       
Sbjct: 61  PNSQAGFGAVPQGQYAPTIAGGQPRPTGMGPQPLPLGGGDA-GYVVENEETLR----RQA 115

Query: 162 XXXXWSLEISRKRALEEAFGSMWVC 186
               WS+EISRKRALEEAFGS+W+ 
Sbjct: 116 RAGGWSIEISRKRALEEAFGSIWIS 140