Miyakogusa Predicted Gene

Lj2g3v1079660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1079660.1 Non Characterized Hit- tr|D8TCD1|D8TCD1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,56.25,3e-18,DUF3571,Protein of unknown function
DUF3571,CUFF.36217.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g015250.1 | DUF3571 family protein | HC | chr6:4935201-493...   175   1e-44
Medtr6g015275.1 | chlororespiratory reduction protein | HC | chr...   172   1e-43

>Medtr6g015250.1 | DUF3571 family protein | HC |
           chr6:4935201-4936906 | 20130731
          Length = 129

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 101/132 (76%), Gaps = 3/132 (2%)

Query: 1   MVGVLQAQAFNVGARYFPYAESYPIQSPVMHVTSPGLVKCFSSLIRQRLPQIAGVSKSNT 60
           MV VLQ  AFNV   +    + Y  Q+P +H+TSP L++CFSS I QR  Q+A   +S T
Sbjct: 1   MVVVLQPHAFNV---FLHTTKIYHAQNPTIHITSPCLIQCFSSSIHQRPSQVARDCRSKT 57

Query: 61  KLFALRRRRANERTETYVLLEPGEDEKFVSEEELKATLKERLTNWPGKALPPDLARYETI 120
           K+FA+RRRR NERT TYVLLEPG+DE+FVSEEELK TLKE LTNWPGK LPPDLARYETI
Sbjct: 58  KVFAMRRRRENERTYTYVLLEPGKDERFVSEEELKDTLKEWLTNWPGKTLPPDLARYETI 117

Query: 121 DEAVSFLVRSVC 132
           D+ VSFL +S C
Sbjct: 118 DDVVSFLAKSFC 129


>Medtr6g015275.1 | chlororespiratory reduction protein | HC |
           chr6:4950796-4952641 | 20130731
          Length = 128

 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 101/130 (77%), Gaps = 3/130 (2%)

Query: 1   MVGVLQAQAFNVGARYFPYAESYPIQSPVMHVTSPGLVKCFSSLIRQRLPQIAGVSKSNT 60
           MV VLQ   FNV   +    + Y +Q+  +H+TSP L++CFSS I QR  Q+A   +S T
Sbjct: 1   MVVVLQPLTFNV---FLHTTKIYHVQNAAIHITSPCLIQCFSSSIHQRPSQVACDCRSKT 57

Query: 61  KLFALRRRRANERTETYVLLEPGEDEKFVSEEELKATLKERLTNWPGKALPPDLARYETI 120
           K+FA+RRRRANERT+TYVLLEPG+DE+FVSEEELK TLKE LTNWPGK LPPDLARYETI
Sbjct: 58  KVFAMRRRRANERTDTYVLLEPGKDERFVSEEELKDTLKEWLTNWPGKTLPPDLARYETI 117

Query: 121 DEAVSFLVRS 130
           D+ VSFL +S
Sbjct: 118 DDDVSFLAKS 127