Miyakogusa Predicted Gene

Lj2g3v1079650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1079650.1 tr|B9H443|B9H443_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_759466 PE=4 SV=1,50.47,3e-18,
,CUFF.36215.1
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g015260.1 | hydroxyproline-rich protein, putative | LC | c...   108   1e-24
Medtr6g015280.1 | hydroxyproline-rich protein, putative | HC | c...   106   5e-24

>Medtr6g015260.1 | hydroxyproline-rich protein, putative | LC |
           chr6:4938385-4937391 | 20130731
          Length = 115

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 70/90 (77%), Gaps = 5/90 (5%)

Query: 41  TDELRKSLIPDPLRVPKAFKFPERYTSPTDSIMSPVTKGLLARGKKGVAKLP--PGKYHP 98
           ++ELRK + P  L++PK FK+ ERYTSPTD +MSPVTKGLLA+ KKG A LP  PGKY P
Sbjct: 28  SNELRKPVTPYHLKLPKPFKYLERYTSPTDMMMSPVTKGLLAKNKKGGALLPPGPGKYQP 87

Query: 99  KIPDMSLQEVGPFQNNKVPIPMLIDERINS 128
           K+PDM LQ++ P QN    +PMLIDE++NS
Sbjct: 88  KVPDMCLQDLSPLQNK---LPMLIDEKLNS 114


>Medtr6g015280.1 | hydroxyproline-rich protein, putative | HC |
           chr6:4954097-4953097 | 20130731
          Length = 116

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 69/90 (76%), Gaps = 5/90 (5%)

Query: 41  TDELRKSLIPDPLRVPKAFKFPERYTSPTDSIMSPVTKGLLARGKKGVAKLP--PGKYHP 98
           ++ELRK + PD L++PK FK+PERYTSPTD +MSPVTKGLLA   KG A LP  PGKY P
Sbjct: 29  SNELRKPVTPDHLKLPKPFKYPERYTSPTDMMMSPVTKGLLAINIKGGALLPPGPGKYQP 88

Query: 99  KIPDMSLQEVGPFQNNKVPIPMLIDERINS 128
           K+P+M LQ+  P QN    +PMLIDE++NS
Sbjct: 89  KVPNMCLQDPSPLQNK---LPMLIDEKLNS 115