Miyakogusa Predicted Gene

Lj2g3v1069240.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1069240.1 Non Characterized Hit- tr|D5LXF4|D5LXF4_OLEEU
Putative ubiquitin-protein ligase/zinc ion binding
(Fr,72.22,0.000007,no description,Zinc finger, RING/FYVE/PHD-type;
ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN,,CUFF.36173.1
         (266 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g013720.1 | zinc finger, C3HC4 type (RING finger) protein ...   441   e-124
Medtr5g043680.1 | zinc finger, C3HC4 type (RING finger) protein ...   272   2e-73
Medtr3g088535.1 | preprotein translocase SecA family protein, pu...    48   8e-06

>Medtr6g013720.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr6:4314859-4318207 | 20130731
          Length = 266

 Score =  441 bits (1133), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/266 (81%), Positives = 227/266 (85%)

Query: 1   MWNFASNCIAGNVELKNDSSKLTHSGSECSDDETSVVGREEGLECPVCWESFNIVENVPY 60
           MWNFASNCIAGNV LK DSS  THS SECSDDETSVVGREEGLECPVCWESFNIVENVPY
Sbjct: 1   MWNFASNCIAGNVGLKKDSSNPTHSASECSDDETSVVGREEGLECPVCWESFNIVENVPY 60

Query: 61  VLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYF 120
           VLWCGHTLCKNCILGLQWA VKFPTLPVQLPLFISCPWCNLLSFRLVYRGNL+FPRKNYF
Sbjct: 61  VLWCGHTLCKNCILGLQWATVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLRFPRKNYF 120

Query: 121 LLWMVESMNGDRVKSHSTFCGDNQQNWPIKDNSTTGSQVYNGSLRRGQVRQPETHNSIQY 180
           LLWMVE MNGDRVKSHST CGDNQQ    K N T G QV +G+L+ GQV  P+T NS Q 
Sbjct: 121 LLWMVEGMNGDRVKSHSTCCGDNQQQCASKGNLTLGGQVNHGNLQGGQVHPPDTSNSSQP 180

Query: 181 HGHTGNYLSMQRLHISLRKSLIFFVQLTAKFPXXXXXXXXXXYAIPASAVILALYILITI 240
             +T N+L M+R+HISLRKSLIFFVQLTAKFP          YA+PASA ILALYIL+TI
Sbjct: 181 RANTRNHLDMERVHISLRKSLIFFVQLTAKFPLIIIFLLIILYAVPASAAILALYILVTI 240

Query: 241 LFALPSFLILYFSYPSLDWLVREIIT 266
           LFALPSFLILYFSYPSLDWLVREII 
Sbjct: 241 LFALPSFLILYFSYPSLDWLVREIIA 266


>Medtr5g043680.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:19193768-19196554 | 20130731
          Length = 262

 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/271 (52%), Positives = 187/271 (69%), Gaps = 15/271 (5%)

Query: 1   MWNFASNCIAGNVELKNDSSKLTHSGSECSDDET-SVVGREEGLECPVCWESFNIVENVP 59
           MWNFAS+ +  ++ +K  S++   S +ECSDDE  S   ++EGLECP+CWESFNIVENVP
Sbjct: 2   MWNFASHALT-SIGMKRSSTEPILSCAECSDDEVCSNASKDEGLECPICWESFNIVENVP 60

Query: 60  YVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNY 119
           YVLWCGHTLCKNC+LGLQWAV+KFPT  +++P F+SCPWC+LLSFR +Y+GN+KFPRKN+
Sbjct: 61  YVLWCGHTLCKNCVLGLQWAVMKFPTQQIRIPFFVSCPWCHLLSFRFIYKGNMKFPRKNF 120

Query: 120 FLLWMVESMNGDRVKSHSTFCGDNQQNWPIKDNSTTGSQ----VYNGSLRRGQVRQPETH 175
           FLLWMVES+NGDR K+ S    D+Q  W  K N   GSQ      + S       Q  ++
Sbjct: 121 FLLWMVESLNGDRHKAVSA-SVDSQPIWSPKVN-LLGSQGTGCSPSRSSSSHCSEQLGSN 178

Query: 176 NSIQYHGHTGNYLSMQRLHISLRKSLIFFVQLTAKFPXXXXXXXXXXYAIPASAVILALY 235
           N+++           +R + SL KSL FF+  T+KFP          + IP S VIL +Y
Sbjct: 179 NAVRGSDR-------ERHYFSLHKSLDFFLHFTSKFPLVIIFLLIAFFVIPCSIVILIIY 231

Query: 236 ILITILFALPSFLILYFSYPSLDWLVREIIT 266
            L+TI+FA+PSF++LYF+YP++  LVREI +
Sbjct: 232 FLLTIIFAIPSFIVLYFAYPTIQRLVREITS 262


>Medtr3g088535.1 | preprotein translocase SecA family protein,
           putative | HC | chr3:40247544-40249238 | 20130731
          Length = 564

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 40  EEGLECPVCWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWC 99
           EE  ECPVC ++++    +P VL CGHT+C+ C++           LP + P  I CP C
Sbjct: 2   EELPECPVCLQNYDDENAIPRVLSCGHTICEACLV----------HLPPRFPNTIRCPAC 51

Query: 100 NLL 102
             L
Sbjct: 52  TQL 54