Miyakogusa Predicted Gene

Lj2g3v1069200.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1069200.3 Non Characterized Hit- tr|H9GCF3|H9GCF3_ANOCA
Uncharacterized protein OS=Anolis carolinensis
GN=UBE4,54.55,2e-19,Modified RING finger domain,U box domain; U-box,U
box domain; UBIQUITINATION FACTOR E4B/UFD2(YEAST),,CUFF.36534.3
         (277 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g013690.1 | ubiquitin conjugation factor E4, putative | HC...   517   e-147

>Medtr6g013690.1 | ubiquitin conjugation factor E4, putative | HC |
            chr6:4310064-4300709 | 20130731
          Length = 1047

 Score =  517 bits (1331), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/277 (89%), Positives = 267/277 (96%), Gaps = 1/277 (0%)

Query: 1    MSNTAEWERRPVQERQERTRLFHSQEIIIRIDMKLANEEVSMLAFTSEQITVPFLLPEMV 60
            MSNTAEWERRPVQERQERTRLFHSQE IIRIDMKLANE+VSMLAFT+EQIT PFLLPEMV
Sbjct: 772  MSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTTEQITAPFLLPEMV 831

Query: 61   ERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKDLLKQIVHIYIHLARGDTNAIFPAA 120
            +RVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPK LLKQIVH+Y+HLARGDTN+IFP+A
Sbjct: 832  DRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSA 891

Query: 121  ISKDGRSYNDQLFSAGADVLRRIGEDPKVIQEFIQLGAKAKVAASEAMDAEATLGEIPDE 180
            ISKDGRSYNDQLFS+ ADVLRRIGED ++IQEFIQLGAKAKVAASEAM+AE TLGEIPDE
Sbjct: 892  ISKDGRSYNDQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMEAEDTLGEIPDE 951

Query: 181  FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDASDPFNRSHLTADMLIPDVELKARI 240
            FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD+SDPFNRSHLTADMLIPDVELKA+I
Sbjct: 952  FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDVELKAKI 1011

Query: 241  EEFVRSQEMKKHGEGLSIQSSSKATIQTTNGEKMLID 277
            EEF+RSQEMKKHGE ++IQ SSKATIQTT+  +MLID
Sbjct: 1012 EEFIRSQEMKKHGESINIQ-SSKATIQTTDTSEMLID 1047