Miyakogusa Predicted Gene
- Lj2g3v1069050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1069050.1 Non Characterized Hit- tr|I1JDI6|I1JDI6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8095
PE=,78.04,0,RNA-binding domain, RBD,NULL; seg,NULL; RNA-DEPENDENT RNA
POLYMERASE,RNA-dependent RNA polymerase, e,CUFF.36192.1
(1100 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g032630.3 | RNA-directed RNA polymerase | HC | chr1:116348... 1677 0.0
Medtr1g032630.1 | RNA-directed RNA polymerase | HC | chr1:116348... 1677 0.0
Medtr1g032720.1 | RNA-directed RNA polymerase | LC | chr1:116909... 1643 0.0
Medtr1g032610.1 | RNA-directed RNA polymerase | HC | chr1:116260... 1638 0.0
Medtr1g032610.2 | RNA-directed RNA polymerase | HC | chr1:116260... 1566 0.0
Medtr1g032590.1 | RNA-directed RNA polymerase | HC | chr1:116144... 1206 0.0
Medtr1g032630.2 | RNA-directed RNA polymerase | HC | chr1:116348... 1182 0.0
Medtr1g032710.1 | RNA-dependent RNA polymerase family protein | ... 838 0.0
Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | ... 764 0.0
Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | ... 763 0.0
Medtr3g107390.2 | RNA-dependent RNA polymerase family protein | ... 571 e-162
Medtr3g107390.1 | RNA-dependent RNA polymerase family protein | ... 571 e-162
Medtr6g088660.1 | RNA-dependent RNA polymerase family protein | ... 85 5e-16
>Medtr1g032630.3 | RNA-directed RNA polymerase | HC |
chr1:11634851-11640459 | 20130731
Length = 1114
Score = 1677 bits (4344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/1092 (74%), Positives = 920/1092 (84%), Gaps = 8/1092 (0%)
Query: 3 KTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGRVPRAFAIIQFTSVESSADM 62
KTIELYGFP V VS V+ FVE+YTG+ +V A+K+R G GRV RAFAIIQFT+ + + M
Sbjct: 5 KTIELYGFPSFVNVSQVKIFVEHYTGEGSVVAMKIRVGNGRVKRAFAIIQFTTAKHATFM 64
Query: 63 MS--RANSLWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNTVN 120
M+ L +G+SYLKVRE+ERDI PKPR FL SL++VKL FGCQISK RFS LW V+
Sbjct: 65 MALPSRTKLRFGDSYLKVRELERDIDPKPRAFLDSLDDVKLYFGCQISKERFSKLWK-VD 123
Query: 121 VEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIYK 180
V+FG GMRKW F + N ++KLELSYENIWK+ELHQP+G AK+LLIQL+GAPR+++
Sbjct: 124 ASVDFGIGMRKWRFSMHHENKKFKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVFE 183
Query: 181 LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFREN 240
N PTS +VY+DP NY D+PD+QWIRA+DFTP + IGQSSA+CLEL + PNF+EN
Sbjct: 184 CNVPTSTSVYKDPLKNYYRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKEN 243
Query: 241 FAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGPSLD 300
+YEE + T+E+G FS N +VP+VAPPQGI+IP+DILFKVNSLVQHGCL+G LD
Sbjct: 244 CVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQIPFDILFKVNSLVQHGCLSGSELD 303
Query: 301 NDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTISLD 360
NDFY LVDP ++++ I++ALEK+Y+SKDFCYEP +WL QY YL + PPRSPTISLD
Sbjct: 304 NDFYRLVDPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLD 363
Query: 361 TGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYSTDLSS 420
GLVY+RR Q+TPCKVYFCGPEINVSNRVLRHF +HIDNFLRVSFVDEELD +YS DLSS
Sbjct: 364 NGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELDNMYSADLSS 423
Query: 421 R-TDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAYIR 479
R ++ +TEIY RILSILRNGI IG KFEFLAFSSSQLRENSLWMFA TTTG TA IR
Sbjct: 424 RISENGRTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTADSIR 483
Query: 480 EWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFSDGIGK 539
EWMGDF RI+NVAKYAARLGQSFGSSTETLSV R+E+EIIPD KV G TEYVFSDGIGK
Sbjct: 484 EWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIEIIPDAKVKHGATEYVFSDGIGK 543
Query: 540 ISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSDNTKLD 599
IS E AR VA+KCGH+S PSAFQIRYGGYKGVVAVDPTS KLSLRKSMHKYDSDN KLD
Sbjct: 544 ISLELARRVAKKCGHDSVPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMHKYDSDNIKLD 603
Query: 600 VLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLMSS 659
VLACSKFQPCYLNRQLITLL TL V+D+VFEKKQ++AV QL+T+LTDS KA E LDLM S
Sbjct: 604 VLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEVLDLMCS 663
Query: 660 GEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCLDETG 719
GE+TNILKEMLICGYKP+VEPFLSMM+QTFRASKLLELR KTRIFIP GRAMMG LDET
Sbjct: 664 GEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETR 723
Query: 720 TLEYGQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDCVV 779
TLEYG+VFVQ+S+NR + S V+ G V+VAKNPCLHPGDVRVLKA++VPAL HMVDCVV
Sbjct: 724 TLEYGEVFVQYSSNRFSSHS-RVVKGMVIVAKNPCLHPGDVRVLKAVDVPALRHMVDCVV 782
Query: 780 FPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIPSRTEQPMDYTAAPNMELDHDVMIEEVE 839
FP+KG RPHPNECSGSDLDGDIYFVCWDS+LIP T PM+Y +A + LDHDV IEEVE
Sbjct: 783 FPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPPLTIDPMEYDSAQPIVLDHDVEIEEVE 842
Query: 840 EYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQE 899
EYFTNYI+ND LGIIANAHTVFAD+EP KAM+EPCI+L++LFSIAVDFPKTG+PAVIP+E
Sbjct: 843 EYFTNYILNDSLGIIANAHTVFADKEPAKAMSEPCIELAKLFSIAVDFPKTGIPAVIPRE 902
Query: 900 LYCKEYPDFMEKPDKPTYVSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDMEVD 959
L+ KEYPDFMEK DK TY S NVIGKLFRE+QGIS+ GSITSFT EVA KS+DPDMEVD
Sbjct: 903 LFAKEYPDFMEKADKTTYKSDNVIGKLFREIQGISTKDGSITSFTLEVAKKSYDPDMEVD 962
Query: 960 GFMDYVDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAV 1019
GFMDYVDDA+Y+K NYD +LGNLMDYYGIKTE+EILSGNIMKM+KSFTKRRDA+AITMAV
Sbjct: 963 GFMDYVDDAFYYKSNYDEKLGNLMDYYGIKTESEILSGNIMKMAKSFTKRRDADAITMAV 1022
Query: 1020 RSLRKEARTWFN---XXXXXXXXXXXXXXXXWYYVTYHHSYWGCYDEGMNRDHYLSFPWC 1076
RSLRKEAR+WFN WYYVTYHHSY+G Y+EGM RDH+LSFPWC
Sbjct: 1023 RSLRKEARSWFNDGSASVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWC 1082
Query: 1077 VYSLLVQIKKEK 1088
VY LLVQIKKEK
Sbjct: 1083 VYHLLVQIKKEK 1094
>Medtr1g032630.1 | RNA-directed RNA polymerase | HC |
chr1:11634851-11640459 | 20130731
Length = 1114
Score = 1677 bits (4344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/1092 (74%), Positives = 920/1092 (84%), Gaps = 8/1092 (0%)
Query: 3 KTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGRVPRAFAIIQFTSVESSADM 62
KTIELYGFP V VS V+ FVE+YTG+ +V A+K+R G GRV RAFAIIQFT+ + + M
Sbjct: 5 KTIELYGFPSFVNVSQVKIFVEHYTGEGSVVAMKIRVGNGRVKRAFAIIQFTTAKHATFM 64
Query: 63 MS--RANSLWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNTVN 120
M+ L +G+SYLKVRE+ERDI PKPR FL SL++VKL FGCQISK RFS LW V+
Sbjct: 65 MALPSRTKLRFGDSYLKVRELERDIDPKPRAFLDSLDDVKLYFGCQISKERFSKLWK-VD 123
Query: 121 VEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIYK 180
V+FG GMRKW F + N ++KLELSYENIWK+ELHQP+G AK+LLIQL+GAPR+++
Sbjct: 124 ASVDFGIGMRKWRFSMHHENKKFKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVFE 183
Query: 181 LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFREN 240
N PTS +VY+DP NY D+PD+QWIRA+DFTP + IGQSSA+CLEL + PNF+EN
Sbjct: 184 CNVPTSTSVYKDPLKNYYRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKEN 243
Query: 241 FAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGPSLD 300
+YEE + T+E+G FS N +VP+VAPPQGI+IP+DILFKVNSLVQHGCL+G LD
Sbjct: 244 CVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQIPFDILFKVNSLVQHGCLSGSELD 303
Query: 301 NDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTISLD 360
NDFY LVDP ++++ I++ALEK+Y+SKDFCYEP +WL QY YL + PPRSPTISLD
Sbjct: 304 NDFYRLVDPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLD 363
Query: 361 TGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYSTDLSS 420
GLVY+RR Q+TPCKVYFCGPEINVSNRVLRHF +HIDNFLRVSFVDEELD +YS DLSS
Sbjct: 364 NGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELDNMYSADLSS 423
Query: 421 R-TDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAYIR 479
R ++ +TEIY RILSILRNGI IG KFEFLAFSSSQLRENSLWMFA TTTG TA IR
Sbjct: 424 RISENGRTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTADSIR 483
Query: 480 EWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFSDGIGK 539
EWMGDF RI+NVAKYAARLGQSFGSSTETLSV R+E+EIIPD KV G TEYVFSDGIGK
Sbjct: 484 EWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIEIIPDAKVKHGATEYVFSDGIGK 543
Query: 540 ISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSDNTKLD 599
IS E AR VA+KCGH+S PSAFQIRYGGYKGVVAVDPTS KLSLRKSMHKYDSDN KLD
Sbjct: 544 ISLELARRVAKKCGHDSVPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMHKYDSDNIKLD 603
Query: 600 VLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLMSS 659
VLACSKFQPCYLNRQLITLL TL V+D+VFEKKQ++AV QL+T+LTDS KA E LDLM S
Sbjct: 604 VLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEVLDLMCS 663
Query: 660 GEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCLDETG 719
GE+TNILKEMLICGYKP+VEPFLSMM+QTFRASKLLELR KTRIFIP GRAMMG LDET
Sbjct: 664 GEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETR 723
Query: 720 TLEYGQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDCVV 779
TLEYG+VFVQ+S+NR + S V+ G V+VAKNPCLHPGDVRVLKA++VPAL HMVDCVV
Sbjct: 724 TLEYGEVFVQYSSNRFSSHS-RVVKGMVIVAKNPCLHPGDVRVLKAVDVPALRHMVDCVV 782
Query: 780 FPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIPSRTEQPMDYTAAPNMELDHDVMIEEVE 839
FP+KG RPHPNECSGSDLDGDIYFVCWDS+LIP T PM+Y +A + LDHDV IEEVE
Sbjct: 783 FPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPPLTIDPMEYDSAQPIVLDHDVEIEEVE 842
Query: 840 EYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQE 899
EYFTNYI+ND LGIIANAHTVFAD+EP KAM+EPCI+L++LFSIAVDFPKTG+PAVIP+E
Sbjct: 843 EYFTNYILNDSLGIIANAHTVFADKEPAKAMSEPCIELAKLFSIAVDFPKTGIPAVIPRE 902
Query: 900 LYCKEYPDFMEKPDKPTYVSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDMEVD 959
L+ KEYPDFMEK DK TY S NVIGKLFRE+QGIS+ GSITSFT EVA KS+DPDMEVD
Sbjct: 903 LFAKEYPDFMEKADKTTYKSDNVIGKLFREIQGISTKDGSITSFTLEVAKKSYDPDMEVD 962
Query: 960 GFMDYVDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAV 1019
GFMDYVDDA+Y+K NYD +LGNLMDYYGIKTE+EILSGNIMKM+KSFTKRRDA+AITMAV
Sbjct: 963 GFMDYVDDAFYYKSNYDEKLGNLMDYYGIKTESEILSGNIMKMAKSFTKRRDADAITMAV 1022
Query: 1020 RSLRKEARTWFN---XXXXXXXXXXXXXXXXWYYVTYHHSYWGCYDEGMNRDHYLSFPWC 1076
RSLRKEAR+WFN WYYVTYHHSY+G Y+EGM RDH+LSFPWC
Sbjct: 1023 RSLRKEARSWFNDGSASVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWC 1082
Query: 1077 VYSLLVQIKKEK 1088
VY LLVQIKKEK
Sbjct: 1083 VYHLLVQIKKEK 1094
>Medtr1g032720.1 | RNA-directed RNA polymerase | LC |
chr1:11690971-11682431 | 20130731
Length = 1726
Score = 1643 bits (4254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 802/1095 (73%), Positives = 915/1095 (83%), Gaps = 9/1095 (0%)
Query: 3 KTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGRVPRAFAIIQFTSVESSADM 62
KTIEL GFPC+ TV V++FVE+YTG+ +V A+K+R GKG V RAFAIIQFT+ + + M
Sbjct: 614 KTIELSGFPCYETVYDVKSFVEHYTGEGSVVAMKIREGKGHVRRAFAIIQFTTAKHATYM 673
Query: 63 MSRAN---SLW-YGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNT 118
M+ +N W YG LKVREMERDI P+PR FL SL++VKL FGCQISK RFSALW
Sbjct: 674 MTLSNISLPTWRYGGYDLKVREMERDINPRPRAFLESLDDVKLHFGCQISKERFSALWRE 733
Query: 119 VNVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRI 178
V+V V FG GMRKW F + ++ ++KLELSYENI K+ELH+PRG AK+LLIQL+GAP++
Sbjct: 734 VDVSVEFGIGMRKWRFSMRHHDKKFKLELSYENIGKIELHRPRGKTAKYLLIQLIGAPQV 793
Query: 179 YKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFR 238
++L P S NVYEDP+ NY D+PDEQW R++DFTPFS IG SSALC+ELP + PNFR
Sbjct: 794 FELYIPNSKNVYEDPAKNYYKDSPDEQWTRSIDFTPFSCIGHSSALCIELPSNRDFPNFR 853
Query: 239 ENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGPS 298
ENFA+YEE T+E GLPFS NL +VPIVAPP+GI IP+DI+FKVN+LVQHGCL+G
Sbjct: 854 ENFAHYEEIEGNYTLERGLPFSRNLDVVPIVAPPRGINIPFDIMFKVNALVQHGCLSGSE 913
Query: 299 LDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTIS 358
LDNDFY LVDP +M +E+ALEK+Y+SKDFCYEP +WL +QY Y+ S P SPTIS
Sbjct: 914 LDNDFYRLVDPLKMTSDCVEHALEKMYYSKDFCYEPARWLKDQYKMYIKSNYLPPSPTIS 973
Query: 359 LDTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYSTDL 418
LD GLVY+RR Q+TP KVYFCGPEINVSNRVLR F +HIDNFLRVSFVDE LDKLYS DL
Sbjct: 974 LDDGLVYVRRVQITPSKVYFCGPEINVSNRVLRRFHKHIDNFLRVSFVDEGLDKLYSADL 1033
Query: 419 SSR-TDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAY 477
SS ++ +T+IY RILSILRNGI IG KKFEFLAFSSSQLRENSLWMF+PTTTG TA
Sbjct: 1034 SSHISESGRTKIYYRILSILRNGIDIGGKKFEFLAFSSSQLRENSLWMFSPTTTGLTADS 1093
Query: 478 IREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFSDGI 537
IREWMGDF RI+NVAKYAARLGQSFGSSTETLSVSR+E+E I DVKV G T+YVFSDGI
Sbjct: 1094 IREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVSRNEIETISDVKVKHGATKYVFSDGI 1153
Query: 538 GKISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSDNTK 597
GKIS E AR VA+KCGH+S PSAFQIRY G+KGVVAVDPTS KLSLRKSMHKYDSDN K
Sbjct: 1154 GKISIELARRVAKKCGHDSMPSAFQIRYCGFKGVVAVDPTSSLKLSLRKSMHKYDSDNIK 1213
Query: 598 LDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLM 657
LDVLACSKFQPCYLNRQLITLLSTL V+D+VFEKKQR VNQL+T+LTDS+KA E LDLM
Sbjct: 1214 LDVLACSKFQPCYLNRQLITLLSTLDVKDSVFEKKQRKVVNQLNTILTDSMKAHEVLDLM 1273
Query: 658 SSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCLDE 717
SGE+ NILK+MLICGYKPN+EPFLSMM+QTFRASKLLELR +TRIFIP GR MMG LDE
Sbjct: 1274 FSGEVANILKDMLICGYKPNIEPFLSMMLQTFRASKLLELRQRTRIFIPKGRTMMGVLDE 1333
Query: 718 TGTLEYGQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDC 777
T TLEYG+VFVQ+SN RL S +V+ GKVVVAKNPCLHPGDVRVLKA++VPAL HMVDC
Sbjct: 1334 TRTLEYGEVFVQYSNKRLSGLS-HVVKGKVVVAKNPCLHPGDVRVLKAVDVPALRHMVDC 1392
Query: 778 VVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIPSRTEQPMDYTAAPNMELDHDVMIEE 837
VVFP+KG RPHPNECSGSDLDGDIYFVCWDS+LIP RT +PM+Y +A LDHDV IEE
Sbjct: 1393 VVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPPRTIEPMEYDSAQPTVLDHDVEIEE 1452
Query: 838 VEEYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIP 897
VEEYFTNYI+ND LGIIANAH VFAD+EP KAMAEPCI+L++LFS+AVDFPKTG+PAVIP
Sbjct: 1453 VEEYFTNYILNDSLGIIANAHIVFADKEPGKAMAEPCIELAKLFSVAVDFPKTGIPAVIP 1512
Query: 898 QELYCKEYPDFMEKPDKPTYVSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDME 957
L+ KEYPDFMEKPDK TY S NVIGKLFRE+QGIS++ GSITSFT EVA +S DPDME
Sbjct: 1513 PHLFAKEYPDFMEKPDKTTYKSKNVIGKLFREIQGISTNDGSITSFTLEVAKESHDPDME 1572
Query: 958 VDGFMDYVDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITM 1017
GFMDY DDA+YHK NYDY+LGNLMDYYGIKTE+EI+SGNIMKMSKSFTKRRDA+AI M
Sbjct: 1573 FVGFMDYADDAFYHKTNYDYKLGNLMDYYGIKTESEIISGNIMKMSKSFTKRRDADAIAM 1632
Query: 1018 AVRSLRKEARTWFNXXXXXXXXXXX---XXXXXWYYVTYHHSYWGCYDEGMNRDHYLSFP 1074
A++SLRKEAR+WFN WY+VTYHHSY+G Y+EGM RDH+LSFP
Sbjct: 1633 AIKSLRKEARSWFNEDNTGADSGSDCPYAKASAWYFVTYHHSYYGLYNEGMQRDHFLSFP 1692
Query: 1075 WCVYSLLVQIKKEKI 1089
WCVY LLVQIKKEK+
Sbjct: 1693 WCVYHLLVQIKKEKV 1707
Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/620 (68%), Positives = 491/620 (79%), Gaps = 12/620 (1%)
Query: 3 KTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGRVPRAFAIIQFTSVESSADM 62
KTIEL GFPC+ TV V++FVE+YTG+ +V A+K+R GKG V R FAIIQFT+ + + M
Sbjct: 5 KTIELSGFPCYETVYDVKSFVEHYTGEGSVVAMKIREGKGHVRRTFAIIQFTTAKHATYM 64
Query: 63 MSRAN---SLW-YGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNT 118
M+ +N W YG LKVREMERDI P+PR FL SL++VKL FGCQISK RFSALW
Sbjct: 65 MTLSNISLPTWRYGGYDLKVREMERDINPRPRAFLESLDDVKLHFGCQISKERFSALWRE 124
Query: 119 VNVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRI 178
V+V V FG GMRKW F + ++ ++KLELSYENI K+ELH+PRG AK+LLIQL+GAP++
Sbjct: 125 VDVSVEFGIGMRKWRFSMRHHDKKFKLELSYENIGKIELHRPRGKTAKYLLIQLIGAPQV 184
Query: 179 YKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFR 238
++L P S NVYEDP+ NY D+PDEQW R++DFTPFS IG SSALC+ELP + PNFR
Sbjct: 185 FELYIPNSKNVYEDPAKNYYKDSPDEQWTRSIDFTPFSCIGHSSALCIELPSNRDFPNFR 244
Query: 239 ENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGPS 298
ENFA+YEE T+E GLPFS NL +VPIVAPP+GI IP+DI+FKVN+LVQHGCL+G
Sbjct: 245 ENFAHYEEIEGNYTLERGLPFSRNLDVVPIVAPPRGINIPFDIMFKVNALVQHGCLSGSE 304
Query: 299 LDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTIS 358
LDNDFY LVDP +M +E+ALEK+Y+SKDFCYEP +WL +QY Y+ S P SPTIS
Sbjct: 305 LDNDFYRLVDPLKMTSDCVEHALEKMYYSKDFCYEPARWLKDQYKMYIKSNYLPPSPTIS 364
Query: 359 LDTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYSTDL 418
LD GLVY+RR Q+TP KVYFCGPEINVSNRVLR F +HIDNFLRVSFVDE LDKLYS DL
Sbjct: 365 LDDGLVYVRRVQITPSKVYFCGPEINVSNRVLRRFHKHIDNFLRVSFVDEGLDKLYSADL 424
Query: 419 SSR-TDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAY 477
SS ++ +T+IY RILSILRNGI IG KKFEFLAFSSSQLRENSLWMF+PTTTG TA
Sbjct: 425 SSHISESGRTKIYYRILSILRNGIDIGGKKFEFLAFSSSQLRENSLWMFSPTTTGLTADS 484
Query: 478 IREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFSDGI 537
IREWMGDF RI+NVAKYAARLGQSFGSSTETLSVSR+E+E I DVKV G T+YVFSDGI
Sbjct: 485 IREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVSRNEIETISDVKVKHGATKYVFSDGI 544
Query: 538 GKISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSDNTK 597
GKIS E AR VA+KCGH+S PSAFQIRYGG+KGVVAVDPTS KLSLRKSMHK S +K
Sbjct: 545 GKISIELARRVAKKCGHDSMPSAFQIRYGGFKGVVAVDPTSSLKLSLRKSMHKSISGKSK 604
Query: 598 LDVLACSKFQ-------PCY 610
L K + PCY
Sbjct: 605 ELALRMGKSKTIELSGFPCY 624
>Medtr1g032610.1 | RNA-directed RNA polymerase | HC |
chr1:11626089-11631992 | 20130731
Length = 1117
Score = 1638 bits (4241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 811/1097 (73%), Positives = 920/1097 (83%), Gaps = 15/1097 (1%)
Query: 3 KTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGRVPRAFAIIQFTSVESSADM 62
KTIELYGFP +VTV V+ FVE YTG+ +V AIK+R GK R+ AFAIIQFT+ + DM
Sbjct: 5 KTIELYGFPHYVTVPDVKRFVEQYTGEGSVVAIKIREGKARIRTAFAIIQFTTKDHVTDM 64
Query: 63 M---SRANS-LWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNT 118
M SR+ S L YG+SYLKVREMERDIV +PR LHSLN+VKL F CQIS+ R S LW
Sbjct: 65 MALPSRSLSPLQYGSSYLKVREMERDIVRRPREILHSLNDVKLYFCCQISEERLSVLWRE 124
Query: 119 VNVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRI 178
V+V V+FG GMRKW F L +N +KLELSYENIWK+ELHQPR K+LLIQL+GAPR+
Sbjct: 125 VDVRVDFGIGMRKWRFTLCHDNKTFKLELSYENIWKIELHQPRSKTTKYLLIQLIGAPRV 184
Query: 179 YKLNNPTSG---NVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVP 235
++L +PTS NVYED S NY D PD+QWIRAVDFTP S IGQSSALCLELP + P
Sbjct: 185 FELYSPTSDDAYNVYEDLSKNYFSDPPDDQWIRAVDFTPCSCIGQSSALCLELPSNRDFP 244
Query: 236 NFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLA 295
NFRENFA YEESA +E+G PFS NL +VP+V+PPQGI+IP+DILFKVNSLVQHGCL+
Sbjct: 245 NFRENFAQYEESAGPYMLESGSPFSCNLDVVPMVSPPQGIQIPFDILFKVNSLVQHGCLS 304
Query: 296 GPSLDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSP 355
G LDN FYHLVDP R++++ IE ALEK+Y+S DFCYEP +WL +QY Y SS PRSP
Sbjct: 305 GSELDNAFYHLVDPTRVNVELIENALEKMYYSNDFCYEPVRWLKDQYKMYHSSNNLPRSP 364
Query: 356 TISLDTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYS 415
TISLD GLVY+RRAQ+TPCKVYFCGPEINVSNRVLR +++H+DNFLRVSFVDEELDKLYS
Sbjct: 365 TISLDNGLVYVRRAQITPCKVYFCGPEINVSNRVLRKYKKHMDNFLRVSFVDEELDKLYS 424
Query: 416 TDLSSRTD-RQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCT 474
+DLSSR +T+IY RILSILRNGIVIGDKKFEFLAFSSSQLRE+SLWMFA T TG T
Sbjct: 425 SDLSSRISVGGRTDIYYRILSILRNGIVIGDKKFEFLAFSSSQLRESSLWMFARTPTGDT 484
Query: 475 AAYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFS 534
A IREWMGDF RI+NVAKYAARLGQSFGSSTET +VS E+EII DV +T+YVFS
Sbjct: 485 AGSIREWMGDFSRIKNVAKYAARLGQSFGSSTETTTVSSTEIEIILDVH---NKTKYVFS 541
Query: 535 DGIGKISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSD 594
DGIGKIS E AR VA+KCG++S PSAFQIRYGGYKGVVAVDPTS KLSLR SM KYDSD
Sbjct: 542 DGIGKISLELARRVAQKCGYDSMPSAFQIRYGGYKGVVAVDPTSSVKLSLRMSMLKYDSD 601
Query: 595 NTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEAL 654
NT LDVLACSKF+PCYLNRQLITLLSTL V D+VFEKKQ++AV+QL+T+LTDS KA E L
Sbjct: 602 NTDLDVLACSKFRPCYLNRQLITLLSTLDVEDSVFEKKQKEAVDQLNTILTDSTKAHEVL 661
Query: 655 DLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGC 714
DLMSSGE+TNILKEMLICGYKPNVEPFLSMM+QTFRASKLLELR KTRIFIP GRAMMG
Sbjct: 662 DLMSSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGV 721
Query: 715 LDETGTLEYGQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHM 774
LDET TLEYG+VFVQ+SNNR + S +V+ GKVVVAKNPCL+PGDVRVLKA++VPAL HM
Sbjct: 722 LDETRTLEYGEVFVQYSNNREDSLS-HVVNGKVVVAKNPCLYPGDVRVLKAVDVPALRHM 780
Query: 775 VDCVVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIPSRTEQPMDYTAAPNMELDHDVM 834
VDCVVFP+KG RPHPNECSGSDLDGDIYFVCWDS+LIP +T PM+Y +A + LDHDV
Sbjct: 781 VDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPPKTIDPMEYDSAKPIVLDHDVE 840
Query: 835 IEEVEEYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPA 894
IEEV++YFT+YI+NDCLGIIANAHTVFAD+EP KAMA+PC++L++LFS AVDFPKTG+PA
Sbjct: 841 IEEVQKYFTDYILNDCLGIIANAHTVFADKEPGKAMADPCVELAKLFSTAVDFPKTGIPA 900
Query: 895 VIPQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDP 954
IP+ L+ EYPDFMEKPDKP Y S NVIGKLFRE+QGIS+ GSITSFT EVA +S+D
Sbjct: 901 EIPRGLFPTEYPDFMEKPDKPIYKSKNVIGKLFREIQGISTKDGSITSFTLEVAKESYDS 960
Query: 955 DMEVDGFMDYVDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEA 1014
DME +GFMDYVDDA+YHK NYDY+LGNLMDYYGIKTEAEILSGNIMKMSKSFTK+RDA+A
Sbjct: 961 DMEFEGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIMKMSKSFTKKRDADA 1020
Query: 1015 ITMAVRSLRKEARTWFNXXXX---XXXXXXXXXXXXWYYVTYHHSYWGCYDEGMNRDHYL 1071
ITMAVRSLRKEAR+WF WYYVTYHHSY+G Y+EGM RDH+L
Sbjct: 1021 ITMAVRSLRKEARSWFTDSGAGVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFL 1080
Query: 1072 SFPWCVYSLLVQIKKEK 1088
SFPWCVY LLVQIKKEK
Sbjct: 1081 SFPWCVYHLLVQIKKEK 1097
>Medtr1g032610.2 | RNA-directed RNA polymerase | HC |
chr1:11626089-11631992 | 20130731
Length = 1054
Score = 1566 bits (4054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1027 (74%), Positives = 870/1027 (84%), Gaps = 11/1027 (1%)
Query: 69 LWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNTVNVEVNFGSG 128
L YG+SYLKVREMERDIV +PR LHSLN+VKL F CQIS+ R S LW V+V V+FG G
Sbjct: 12 LQYGSSYLKVREMERDIVRRPREILHSLNDVKLYFCCQISEERLSVLWREVDVRVDFGIG 71
Query: 129 MRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIYKLNNPTSG- 187
MRKW F L +N +KLELSYENIWK+ELHQPR K+LLIQL+GAPR+++L +PTS
Sbjct: 72 MRKWRFTLCHDNKTFKLELSYENIWKIELHQPRSKTTKYLLIQLIGAPRVFELYSPTSDD 131
Query: 188 --NVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRENFAYYE 245
NVYED S NY D PD+QWIRAVDFTP S IGQSSALCLELP + PNFRENFA YE
Sbjct: 132 AYNVYEDLSKNYFSDPPDDQWIRAVDFTPCSCIGQSSALCLELPSNRDFPNFRENFAQYE 191
Query: 246 ESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGPSLDNDFYH 305
ESA +E+G PFS NL +VP+V+PPQGI+IP+DILFKVNSLVQHGCL+G LDN FYH
Sbjct: 192 ESAGPYMLESGSPFSCNLDVVPMVSPPQGIQIPFDILFKVNSLVQHGCLSGSELDNAFYH 251
Query: 306 LVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTISLDTGLVY 365
LVDP R++++ IE ALEK+Y+S DFCYEP +WL +QY Y SS PRSPTISLD GLVY
Sbjct: 252 LVDPTRVNVELIENALEKMYYSNDFCYEPVRWLKDQYKMYHSSNNLPRSPTISLDNGLVY 311
Query: 366 IRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYSTDLSSRTD-R 424
+RRAQ+TPCKVYFCGPEINVSNRVLR +++H+DNFLRVSFVDEELDKLYS+DLSSR
Sbjct: 312 VRRAQITPCKVYFCGPEINVSNRVLRKYKKHMDNFLRVSFVDEELDKLYSSDLSSRISVG 371
Query: 425 QKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAYIREWMGD 484
+T+IY RILSILRNGIVIGDKKFEFLAFSSSQLRE+SLWMFA T TG TA IREWMGD
Sbjct: 372 GRTDIYYRILSILRNGIVIGDKKFEFLAFSSSQLRESSLWMFARTPTGDTAGSIREWMGD 431
Query: 485 FRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFSDGIGKISHEF 544
F RI+NVAKYAARLGQSFGSSTET +VS E+EII DV +T+YVFSDGIGKIS E
Sbjct: 432 FSRIKNVAKYAARLGQSFGSSTETTTVSSTEIEIILDVH---NKTKYVFSDGIGKISLEL 488
Query: 545 ARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSDNTKLDVLACS 604
AR VA+KCG++S PSAFQIRYGGYKGVVAVDPTS KLSLR SM KYDSDNT LDVLACS
Sbjct: 489 ARRVAQKCGYDSMPSAFQIRYGGYKGVVAVDPTSSVKLSLRMSMLKYDSDNTDLDVLACS 548
Query: 605 KFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLMSSGEITN 664
KF+PCYLNRQLITLLSTL V D+VFEKKQ++AV+QL+T+LTDS KA E LDLMSSGE+TN
Sbjct: 549 KFRPCYLNRQLITLLSTLDVEDSVFEKKQKEAVDQLNTILTDSTKAHEVLDLMSSGEVTN 608
Query: 665 ILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCLDETGTLEYG 724
ILKEMLICGYKPNVEPFLSMM+QTFRASKLLELR KTRIFIP GRAMMG LDET TLEYG
Sbjct: 609 ILKEMLICGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYG 668
Query: 725 QVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDCVVFPKKG 784
+VFVQ+SNNR + S +V+ GKVVVAKNPCL+PGDVRVLKA++VPAL HMVDCVVFP+KG
Sbjct: 669 EVFVQYSNNREDSLS-HVVNGKVVVAKNPCLYPGDVRVLKAVDVPALRHMVDCVVFPQKG 727
Query: 785 SRPHPNECSGSDLDGDIYFVCWDSDLIPSRTEQPMDYTAAPNMELDHDVMIEEVEEYFTN 844
RPHPNECSGSDLDGDIYFVCWDS+LIP +T PM+Y +A + LDHDV IEEV++YFT+
Sbjct: 728 HRPHPNECSGSDLDGDIYFVCWDSELIPPKTIDPMEYDSAKPIVLDHDVEIEEVQKYFTD 787
Query: 845 YIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKE 904
YI+NDCLGIIANAHTVFAD+EP KAMA+PC++L++LFS AVDFPKTG+PA IP+ L+ E
Sbjct: 788 YILNDCLGIIANAHTVFADKEPGKAMADPCVELAKLFSTAVDFPKTGIPAEIPRGLFPTE 847
Query: 905 YPDFMEKPDKPTYVSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDY 964
YPDFMEKPDKP Y S NVIGKLFRE+QGIS+ GSITSFT EVA +S+D DME +GFMDY
Sbjct: 848 YPDFMEKPDKPIYKSKNVIGKLFREIQGISTKDGSITSFTLEVAKESYDSDMEFEGFMDY 907
Query: 965 VDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAVRSLRK 1024
VDDA+YHK NYDY+LGNLMDYYGIKTEAEILSGNIMKMSKSFTK+RDA+AITMAVRSLRK
Sbjct: 908 VDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIMKMSKSFTKKRDADAITMAVRSLRK 967
Query: 1025 EARTWFNXXXX---XXXXXXXXXXXXWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLL 1081
EAR+WF WYYVTYHHSY+G Y+EGM RDH+LSFPWCVY LL
Sbjct: 968 EARSWFTDSGAGVDSGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWCVYHLL 1027
Query: 1082 VQIKKEK 1088
VQIKKEK
Sbjct: 1028 VQIKKEK 1034
>Medtr1g032590.1 | RNA-directed RNA polymerase | HC |
chr1:11614495-11618760 | 20130731
Length = 1140
Score = 1206 bits (3119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/1114 (54%), Positives = 783/1114 (70%), Gaps = 39/1114 (3%)
Query: 1 MRKTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGRVPRAFAIIQFTSVESSA 60
M KTI+++GFP +V+ V F+E + G TV A++++H K +QFT +S
Sbjct: 1 MCKTIQIHGFPSNVSAEEVMKFLEQHAGFQTVLAVEIKHHKDGDSMTHVNVQFTDKKSVE 60
Query: 61 DMMSR-ANSLWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNTV 119
+++ A L Y + L ++ DI+ KPR F ++++ V + FGCQ SK + S LW
Sbjct: 61 TILNLVAKHLSYSGNVLNATLIKPDILSKPRIFAYNVDGVGIHFGCQTSKRKLSVLWEHS 120
Query: 120 NVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIY 179
N V FG+ +RK + + YK++++ E+I ++E+H+ K LL QL APRIY
Sbjct: 121 NASVKFGARLRKMYIFFCYLSKDYKMQINSESISRIEMHRSHCRTKKLLLFQLRSAPRIY 180
Query: 180 KLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRE 239
+ +V E + Y + D W R+VDFTP IGQSS+LC ELP VPNF +
Sbjct: 181 E------KDVSE---IKYFKEAYDNHWFRSVDFTPSCCIGQSSSLCFELPQNTEVPNFCQ 231
Query: 240 NFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGPSL 299
+ + + +E L FS NL VP+V PP+G +PY ILFK+NSLVQH CL ++
Sbjct: 232 YYRNFYKVDNTFDLEKQLGFSSNLNFVPMVIPPEGFNLPYKILFKINSLVQHSCLPLQAI 291
Query: 300 DNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTISL 359
D + +H+VDP R+ +++E AL KLY K+ CY+P +WL +QY Y ++ P S +ISL
Sbjct: 292 DTNLFHMVDPQRIKFEYVESALNKLYQMKECCYDPVQWLEKQYQRYSTNSSIPISSSISL 351
Query: 360 DTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYSTDL- 418
D GLVY+ R +VTP K+YFCGPE+N+SNRVLR++ E DNFLRVSFVDE +DKL S+DL
Sbjct: 352 DDGLVYVHRVKVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDENMDKLRSSDLL 411
Query: 419 --SSRTDRQ-KTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTA 475
SSR D ++++++R+LS L NGI IGDKKFEFLAFSSSQLR+NS WMFAP T G T
Sbjct: 412 SGSSRIDVDGESKVHQRVLSTLTNGIEIGDKKFEFLAFSSSQLRDNSAWMFAPRT-GLTT 470
Query: 476 AYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFSD 535
IR+WMGDF I+NVAKYAARLGQSF SS ET+SV R E+EIIPD+++ G+ +Y FSD
Sbjct: 471 GDIRKWMGDFHEIKNVAKYAARLGQSFSSSRETVSVGRHEIEIIPDIELKRGKIKYCFSD 530
Query: 536 GIGKISHEFARSVARKCG--HNSTPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDS 593
GIGKIS+E A+ VA KCG + PSAFQIRYGGYKGVVAVDP S KLSLR SM K+ S
Sbjct: 531 GIGKISYELAQEVAEKCGCKDHIIPSAFQIRYGGYKGVVAVDPNSSTKLSLRNSMCKFKS 590
Query: 594 DNTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEA 653
+NTKLDVL+ SK +PC+LNRQ+I LLSTLGV+D +F++KQR+ VN+L + S K A
Sbjct: 591 ENTKLDVLSWSKNKPCFLNRQVIVLLSTLGVKDRIFKRKQREIVNKLKMI---SRKPFNA 647
Query: 654 LDLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMG 713
LD+MS G IT++L+EM+ICG+ P EPFLSMM++T A+KL EL+ KTRIF+ GR+M+G
Sbjct: 648 LDMMSQGTITDMLREMIICGFNPTNEPFLSMMLRTICATKLQELQLKTRIFVRKGRSMLG 707
Query: 714 CLDETGTLEYGQVFVQFSNNRL------------GNQSLYVITGKVVVAKNPCLHPGDVR 761
CLDET TL+YG+VFVQ S R + Y++ GKVVVAKNPCLHPGDVR
Sbjct: 708 CLDETRTLKYGEVFVQISLPRKNVMSSISSKDIGAKKGKYIVKGKVVVAKNPCLHPGDVR 767
Query: 762 VLKAMNVPALHHMVDCVVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIPSRTEQPMDY 821
+L+A++VP+LHHMVDCVVFP+KG RPHPNECSGSDLDGDIYFVCWD LIP E PMD+
Sbjct: 768 ILRAIDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPALIPPHQENPMDH 827
Query: 822 TAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLF 881
+ M +DHDV +++VEE+FT+YIV D LG+IA AHTVFAD+EP KAM+ CI+L++L
Sbjct: 828 SPPKVMHVDHDVTLQDVEEHFTHYIVKDTLGVIATAHTVFADKEPEKAMSHSCIELAKLH 887
Query: 882 SIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREVQGISSSAGSIT 941
SIAVDF K+GVPA +PQ L+ K+YPDFMEK DKPTY S ++IGKL+REV+ ++
Sbjct: 888 SIAVDFAKSGVPAEVPQHLHVKQYPDFMEKQDKPTYQSNSIIGKLYREVKNVAQQKSLKK 947
Query: 942 SFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNIMK 1001
SFTK+ A K +D DM++DGF Y A +K YD +L NLMDYYGI+TEAEI+SGNI+K
Sbjct: 948 SFTKKAANKFYDHDMKIDGFEKYTKIACEYKQMYDTKLMNLMDYYGIETEAEIISGNILK 1007
Query: 1002 MSKSFTKRRDAEAITMAVRSLRKEARTWF-------NXXXXXXXXXXXXXXXXWYYVTYH 1054
MSKSF R+D E I AV SLR EAR+WF N WY+VTYH
Sbjct: 1008 MSKSFNDRKDKEGINHAVMSLRNEARSWFSEMIRKSNSQGGGGDDDSYAIASAWYHVTYH 1067
Query: 1055 HSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 1088
SYWGCY+EG+N+DH+LSFPWCV+ L+QIKK+K
Sbjct: 1068 PSYWGCYNEGLNKDHFLSFPWCVHDTLIQIKKDK 1101
>Medtr1g032630.2 | RNA-directed RNA polymerase | HC |
chr1:11634851-11638361 | 20130731
Length = 789
Score = 1182 bits (3058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/787 (72%), Positives = 659/787 (83%), Gaps = 5/787 (0%)
Query: 3 KTIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKVRHGKGRVPRAFAIIQFTSVESSADM 62
KTIELYGFP V VS V+ FVE+YTG+ +V A+K+R G GRV RAFAIIQFT+ + + M
Sbjct: 5 KTIELYGFPSFVNVSQVKIFVEHYTGEGSVVAMKIRVGNGRVKRAFAIIQFTTAKHATFM 64
Query: 63 MS--RANSLWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNTVN 120
M+ L +G+SYLKVRE+ERDI PKPR FL SL++VKL FGCQISK RFS LW V+
Sbjct: 65 MALPSRTKLRFGDSYLKVRELERDIDPKPRAFLDSLDDVKLYFGCQISKERFSKLWK-VD 123
Query: 121 VEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIYK 180
V+FG GMRKW F + N ++KLELSYENIWK+ELHQP+G AK+LLIQL+GAPR+++
Sbjct: 124 ASVDFGIGMRKWRFSMHHENKKFKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVFE 183
Query: 181 LNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFREN 240
N PTS +VY+DP NY D+PD+QWIRA+DFTP + IGQSSA+CLEL + PNF+EN
Sbjct: 184 CNVPTSTSVYKDPLKNYYRDSPDDQWIRAIDFTPCNCIGQSSAICLELSSNRDFPNFKEN 243
Query: 241 FAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGPSLD 300
+YEE + T+E+G FS N +VP+VAPPQGI+IP+DILFKVNSLVQHGCL+G LD
Sbjct: 244 CVHYEEIEGQYTLESGSSFSCNPDVVPMVAPPQGIQIPFDILFKVNSLVQHGCLSGSELD 303
Query: 301 NDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTISLD 360
NDFY LVDP ++++ I++ALEK+Y+SKDFCYEP +WL QY YL + PPRSPTISLD
Sbjct: 304 NDFYRLVDPLGINVELIKHALEKMYYSKDFCYEPARWLKGQYRRYLRANNPPRSPTISLD 363
Query: 361 TGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDEELDKLYSTDLSS 420
GLVY+RR Q+TPCKVYFCGPEINVSNRVLRHF +HIDNFLRVSFVDEELD +YS DLSS
Sbjct: 364 NGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELDNMYSADLSS 423
Query: 421 R-TDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAYIR 479
R ++ +TEIY RILSILRNGI IG KFEFLAFSSSQLRENSLWMFA TTTG TA IR
Sbjct: 424 RISENGRTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTADSIR 483
Query: 480 EWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDVKVNDGRTEYVFSDGIGK 539
EWMGDF RI+NVAKYAARLGQSFGSSTETLSV R+E+EIIPD KV G TEYVFSDGIGK
Sbjct: 484 EWMGDFSRIKNVAKYAARLGQSFGSSTETLSVRRNEIEIIPDAKVKHGATEYVFSDGIGK 543
Query: 540 ISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSDNTKLD 599
IS E AR VA+KCGH+S PSAFQIRYGGYKGVVAVDPTS KLSLRKSMHKYDSDN KLD
Sbjct: 544 ISLELARRVAKKCGHDSVPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMHKYDSDNIKLD 603
Query: 600 VLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLMSS 659
VLACSKFQPCYLNRQLITLL TL V+D+VFEKKQ++AV QL+T+LTDS KA E LDLM S
Sbjct: 604 VLACSKFQPCYLNRQLITLLCTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEVLDLMCS 663
Query: 660 GEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCLDETG 719
GE+TNILKEMLICGYKP+VEPFLSMM+QTFRASKLLELR KTRIFIP GRAMMG LDET
Sbjct: 664 GEVTNILKEMLICGYKPDVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETR 723
Query: 720 TLEYGQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDCVV 779
TLEYG+VFVQ+S+NR + S V+ G V+VAKNPCLHPGDVRVLKA++VPAL HMVDCVV
Sbjct: 724 TLEYGEVFVQYSSNRFSSHS-RVVKGMVIVAKNPCLHPGDVRVLKAVDVPALRHMVDCVV 782
Query: 780 FPKKGSR 786
FP+KG R
Sbjct: 783 FPQKGHR 789
>Medtr1g032710.1 | RNA-dependent RNA polymerase family protein | HC |
chr1:11677169-11674944 | 20130731
Length = 554
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/534 (76%), Positives = 461/534 (86%), Gaps = 4/534 (0%)
Query: 558 PSAFQIRYGGYKGVVAVDPTSRAKLSLRKSMHKYDSDNTKLDVLACSKFQPCYLNRQLIT 617
PSAFQIRY G+KGVVAVDPTS KLSLR SM KYDS N LDVLACSKFQPCYLNRQLIT
Sbjct: 2 PSAFQIRYRGFKGVVAVDPTSSVKLSLRMSMRKYDSVNADLDVLACSKFQPCYLNRQLIT 61
Query: 618 LLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLMSSGEITNILKEMLICGYKPN 677
LLSTL V+D+VFEKKQR VNQL+T+LTDS+KA E LDLM SGE+ NILK+MLICGYKPN
Sbjct: 62 LLSTLDVKDSVFEKKQRKVVNQLNTILTDSMKAHEVLDLMFSGEVANILKDMLICGYKPN 121
Query: 678 VEPFLSMMMQTFRASKLLELRTKTRIFIPSGRAMMGCLDETGTLEYGQVFVQFSNNRLGN 737
+EPFLSMM+QTFRASKLLELR +TRIFIP GRAMMG LDET TLEYG+VFVQ+S+ R
Sbjct: 122 IEPFLSMMLQTFRASKLLELRQRTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSHKRHSC 181
Query: 738 QSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDCVVFPKKGSRPHPNECSGSDL 797
S +V+ G+VVVAKNPCLHPGDVRVLKA++VPAL HMVDCVVFP+KG RPHPNECSGSDL
Sbjct: 182 LS-HVVKGEVVVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQKGHRPHPNECSGSDL 240
Query: 798 DGDIYFVCWDSDLIPSRTEQPMDYTAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANA 857
DGDIYFVCWD +LIP RT +PM+Y +A + L+HDV IEEVEEYFTNY++ND LGII+NA
Sbjct: 241 DGDIYFVCWDPELIPPRTIEPMEYNSAQSTLLNHDVEIEEVEEYFTNYMLNDSLGIISNA 300
Query: 858 HTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTY 917
HTVFAD+EP KAM+EPCI+L++LFSIAVDFPKTG+PAVIP L+ KEYPDFMEKPDK TY
Sbjct: 301 HTVFADKEPAKAMSEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTY 360
Query: 918 VSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDY 977
S NVIGKLFRE+QGIS+ GS+TSFT EVA +S+D DME +GFMDYVDDA+YHK NYDY
Sbjct: 361 KSKNVIGKLFREIQGISTEGGSLTSFTLEVAKESYDSDMEFEGFMDYVDDAFYHKTNYDY 420
Query: 978 RLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNXXXX-- 1035
+LGNLMDYYGIKTE+EILSGNIMKMSKSFTKRRDA+AITMAVRSLRKEAR+WFN
Sbjct: 421 KLGNLMDYYGIKTESEILSGNIMKMSKSFTKRRDADAITMAVRSLRKEARSWFNDGAADV 480
Query: 1036 -XXXXXXXXXXXXWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 1088
WYYV+YHHSY+G Y+EGM RDH+LSFPWCVY LLVQIKKEK
Sbjct: 481 DAGSDDAYAKASAWYYVSYHHSYYGLYNEGMKRDHFLSFPWCVYHLLVQIKKEK 534
>Medtr4g106660.1 | RNA-dependent RNA polymerase family protein | HC |
chr4:44020611-44014643 | 20130731
Length = 1277
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/1126 (38%), Positives = 654/1126 (58%), Gaps = 64/1126 (5%)
Query: 4 TIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKV--------RHGKGRVPRAFAIIQFTS 55
T+ + P T + + ++E G+S+V+A+++ G GRV QF +
Sbjct: 10 TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRV-------QFET 62
Query: 56 VESSADMMSRANS--LWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFS 113
+E+ + ++ A + L + +L + DI+P+P + +NN L G I S
Sbjct: 63 LEAKSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMS 122
Query: 114 ALWNTVNVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELH-QPRGGIAKHLLIQL 172
L + V ++ F ++ + +KLE+ +ENI + + + G LL++L
Sbjct: 123 VLQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKL 182
Query: 173 LGAPRIY-KLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDG 231
PRIY K+ P ++D +C + + W+R DF+ IG S++ E+ +
Sbjct: 183 RYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEE 242
Query: 232 QCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQH 291
+ +F Y E+ + ++E G F VP+V ++PY+ LF++NSLV
Sbjct: 243 SFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLVHT 302
Query: 292 GCLAGPSLDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRP 351
++ S++++ L+ +D + +KL+ CYEP K++ Q + LS K+
Sbjct: 303 QKISLASVNDELIDLL--ASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQ-LHVLSIKKK 359
Query: 352 PRSPTIS---LDTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDE 408
P+ +D ++ RA +TP K+Y GPE+ SN V++HF + +F+R++FV+E
Sbjct: 360 SVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEE 419
Query: 409 ELDKLYSTDLSSRTDRQ------KTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENS 462
+ KL + +S + +TEIY+R+L+ILR+GI+IG K+FEFLAFS+SQLR NS
Sbjct: 420 DWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNS 479
Query: 463 LWMFAPTTTGCTAAYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDV 522
+W+FA + AA IREWMG F IR+V+K AAR+GQ F SS +T ++ +V++IPD+
Sbjct: 480 VWLFA-SNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDI 538
Query: 523 KVNDGRTEYVFSDGIGKISHEFARSVARKC--GHNSTPSAFQIRYGGYKGVVAVDPTSRA 580
++ +Y FSDGIGKIS FAR +A K N PSAFQIRYGGYKGV+AVD S
Sbjct: 539 EITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFK 598
Query: 581 KLSLRKSMHKYDSDNTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQL 640
KLSLRKSM K++S N L V S+ PC+LNR++I+LLSTLG++D Q D + L
Sbjct: 599 KLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLL 658
Query: 641 DTMLTDSLKAQEALDLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTK 700
MLTD A + L+ ++ + +IL +ML Y+PN EP+LSMM++ +L +L+++
Sbjct: 659 GKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSR 718
Query: 701 TRIFIPSGRAMMGCLDETGTLEYGQVFV---------QFSNNRL----GNQSLYVITGKV 747
RIF+P GR ++GCLDETG L YGQVFV +F + L G+ S +I GKV
Sbjct: 719 CRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKV 778
Query: 748 VVAKNPCLHPGDVRVLKAMNVPALHH--MVDCVVFPKKGSRPHPNECSGSDLDGDIYFVC 805
VV KNPCLHPGD+RVL A+ L + DC+VFP+KG RPHPNECSG DLDGD++F+
Sbjct: 779 VVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFIS 838
Query: 806 WDSDLIPSRTEQPMDYTAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTVFADRE 865
WD DLIP++TE PMDYT +DH V +EE+ ++F +Y++ND LG I+ AH V ADRE
Sbjct: 839 WDKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADRE 898
Query: 866 PLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSPNVIGK 925
KA + C++L++L S+AVDF KTG PA +P+ L +E+PDFME+ +KP Y+S V+GK
Sbjct: 899 HDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGK 958
Query: 926 LFREVQGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDYRLGNLMDY 985
L+R + +++ A +++D +EVDGF +++ A H+ Y ++ +LM +
Sbjct: 959 LYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSF 1018
Query: 986 YGIKTEAEILSGNIMKMSKSFTKRRD------AEAITMAVRSLRKEARTWFNXXXXXXXX 1039
YG TE E+L+GN+ + S+ +R + + I ++V+ L+ EA+ WF
Sbjct: 1019 YGATTEDEMLTGNLQNRA-SYLQRDNRRYGDMKDRILISVKDLQLEAKEWFE--SDCQPH 1075
Query: 1040 XXXXXXXXWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIK 1085
WY+VTYH Y+ + +LSFPW V +L+ IK
Sbjct: 1076 EYQLMASAWYHVTYHPKYY------IESSTFLSFPWIVGDILLHIK 1115
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 67/94 (71%)
Query: 837 EVEEYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVI 896
++ ++F +Y++ D LG I+ AH V AD E KA + C++L++L S+AVDF KTG A +
Sbjct: 1119 KIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFAKTGALAEM 1178
Query: 897 PQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREV 930
P+ L KE+PDFME+ +KP YVS V+GKL+R +
Sbjct: 1179 PRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRAL 1212
>Medtr4g106660.2 | RNA-dependent RNA polymerase family protein | HC |
chr4:44020672-44015304 | 20130731
Length = 1123
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/1126 (38%), Positives = 654/1126 (58%), Gaps = 64/1126 (5%)
Query: 4 TIELYGFPCHVTVSSVRTFVENYTGKSTVYAIKV--------RHGKGRVPRAFAIIQFTS 55
T+ + P T + + ++E G+S+V+A+++ G GRV QF +
Sbjct: 10 TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRV-------QFET 62
Query: 56 VESSADMMSRANS--LWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFS 113
+E+ + ++ A + L + +L + DI+P+P + +NN L G I S
Sbjct: 63 LEAKSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMS 122
Query: 114 ALWNTVNVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKLELH-QPRGGIAKHLLIQL 172
L + V ++ F ++ + +KLE+ +ENI + + + G LL++L
Sbjct: 123 VLQSWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKL 182
Query: 173 LGAPRIY-KLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDG 231
PRIY K+ P ++D +C + + W+R DF+ IG S++ E+ +
Sbjct: 183 RYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEE 242
Query: 232 QCVPNFRENFAYYEESARRCTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQH 291
+ +F Y E+ + ++E G F VP+V ++PY+ LF++NSLV
Sbjct: 243 SFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLVHT 302
Query: 292 GCLAGPSLDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRP 351
++ S++++ L+ +D + +KL+ CYEP K++ Q + LS K+
Sbjct: 303 QKISLASVNDELIDLL--ASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQ-LHVLSIKKK 359
Query: 352 PRSPTIS---LDTGLVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDE 408
P+ +D ++ RA +TP K+Y GPE+ SN V++HF + +F+R++FV+E
Sbjct: 360 SVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEE 419
Query: 409 ELDKLYSTDLSSRTDRQ------KTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENS 462
+ KL + +S + +TEIY+R+L+ILR+GI+IG K+FEFLAFS+SQLR NS
Sbjct: 420 DWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNS 479
Query: 463 LWMFAPTTTGCTAAYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEVEIIPDV 522
+W+FA + AA IREWMG F IR+V+K AAR+GQ F SS +T ++ +V++IPD+
Sbjct: 480 VWLFA-SNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDI 538
Query: 523 KVNDGRTEYVFSDGIGKISHEFARSVARKC--GHNSTPSAFQIRYGGYKGVVAVDPTSRA 580
++ +Y FSDGIGKIS FAR +A K N PSAFQIRYGGYKGV+AVD S
Sbjct: 539 EITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFK 598
Query: 581 KLSLRKSMHKYDSDNTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQL 640
KLSLRKSM K++S N L V S+ PC+LNR++I+LLSTLG++D Q D + L
Sbjct: 599 KLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLL 658
Query: 641 DTMLTDSLKAQEALDLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTK 700
MLTD A + L+ ++ + +IL +ML Y+PN EP+LSMM++ +L +L+++
Sbjct: 659 GKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSR 718
Query: 701 TRIFIPSGRAMMGCLDETGTLEYGQVFV---------QFSNNRL----GNQSLYVITGKV 747
RIF+P GR ++GCLDETG L YGQVFV +F + L G+ S +I GKV
Sbjct: 719 CRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKV 778
Query: 748 VVAKNPCLHPGDVRVLKAMNVPALHH--MVDCVVFPKKGSRPHPNECSGSDLDGDIYFVC 805
VV KNPCLHPGD+RVL A+ L + DC+VFP+KG RPHPNECSG DLDGD++F+
Sbjct: 779 VVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFIS 838
Query: 806 WDSDLIPSRTEQPMDYTAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTVFADRE 865
WD DLIP++TE PMDYT +DH V +EE+ ++F +Y++ND LG I+ AH V ADRE
Sbjct: 839 WDKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADRE 898
Query: 866 PLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSPNVIGK 925
KA + C++L++L S+AVDF KTG PA +P+ L +E+PDFME+ +KP Y+S V+GK
Sbjct: 899 HDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGK 958
Query: 926 LFREVQGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDYRLGNLMDY 985
L+R + +++ A +++D +EVDGF +++ A H+ Y ++ +LM +
Sbjct: 959 LYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSF 1018
Query: 986 YGIKTEAEILSGNIMKMSKSFTKRRD------AEAITMAVRSLRKEARTWFNXXXXXXXX 1039
YG TE E+L+GN+ + S+ +R + + I ++V+ L+ EA+ WF
Sbjct: 1019 YGATTEDEMLTGNLQNRA-SYLQRDNRRYGDMKDRILISVKDLQLEAKEWFE--SDCQPH 1075
Query: 1040 XXXXXXXXWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIK 1085
WY+VTYH Y+ + +LSFPW V +L+ IK
Sbjct: 1076 EYQLMASAWYHVTYHPKYY------IESSTFLSFPWIVGDILLHIK 1115
>Medtr3g107390.2 | RNA-dependent RNA polymerase family protein | HC |
chr3:49541314-49536090 | 20130731
Length = 1203
Score = 571 bits (1471), Expect = e-162, Method: Compositional matrix adjust.
Identities = 387/1104 (35%), Positives = 566/1104 (51%), Gaps = 134/1104 (12%)
Query: 41 KGRVPRAFAIIQFTSVESSADMMSRAN--SLWYGNSYLKVREMERDIVPKPRTFLHS--- 95
K P AF + FT +S+ + ++ A L LKV P+ FL+
Sbjct: 75 KKVAPHAF--VHFTLPDSATEALNAAGRCDLILNGKVLKVISG-----PQNPNFLNQRRR 127
Query: 96 ------LNNVKLSFGCQISKGRFSALWNTVNVEVNF--------------------GSGM 129
+++V + G +S F+ W + VNF G+
Sbjct: 128 TEAPFKMSDVIVEIGTLVSPADFTVAWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGI 187
Query: 130 RKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIYKLNNPTSGNV 189
K I D +K+ +I +++ + + +L++L +P ++ ++
Sbjct: 188 GKQAVIKCD----FKVGFLIRDIEEIQRYDDTSHLV--VLLRLASSPLVWY--RTADDDI 239
Query: 190 YEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESAR 249
E +++ D D+ WIR DFTP IG+ + + +P P E R
Sbjct: 240 DESVTIDLLDD--DDPWIRTTDFTPSGAIGRCNYYRISIP-----PRHGAKLNKALEYLR 292
Query: 250 RCTVETGLPFSLNLRLVPIVAPPQ-------GI-------------EIPYDILFKVNSLV 289
R V +P+ PP+ G+ +I +DI+F +N++V
Sbjct: 293 RQRVPR----------IPLKRPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIV 342
Query: 290 QHGCLAGPSLDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSK 349
G SL N F+ L+ D+ AL+ + K ++ K L E +L
Sbjct: 343 HRGIFNQYSLSNKFFELLKNQPKDVNVA--ALKHICTYKHPVFDAAKRL-EAVQKWLL-- 397
Query: 350 RPPRSPTISLDTG-LVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDE 408
R P+ IS + ++ +RR VTP K Y PE+ +SNRVLR FRE D FLRV+F+DE
Sbjct: 398 RNPKFYQISKQSDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDE 457
Query: 409 ELDKLYS-----------TDLSSRTDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQ 457
L + +++S + +QKT IY+R+ +IL +G +K+ FLAFSS+Q
Sbjct: 458 GQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQ 517
Query: 458 LRENSLWMFAPTTTGCTAAYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEV- 516
LR+ S W FA T IR WMG F + +NVAK AAR+GQ F S+ ++ V +EV
Sbjct: 518 LRDRSAWFFA-EDKDITCDDIRNWMGRFNQ-KNVAKCAARMGQCFSSTYASVEVPANEVN 575
Query: 517 EIIPDVKVNDGRTEYVFSDGIGKISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDP 576
++PDV+ R YVFSDGIG I+ + A VA K + PSA+QIRY G+KGVVA P
Sbjct: 576 SMLPDVE----RNNYVFSDGIGIITTDLAVEVAEKLKLDKAPSAYQIRYAGFKGVVACWP 631
Query: 577 TSR--AKLSLRKSMHKYDSDNTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQR 634
KLSLR SM+K+ S +T L++ A ++FQP +LNRQ+ITLLS L V D +F K Q
Sbjct: 632 AKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQE 691
Query: 635 DAVNQLDTMLTDSLKAQEALDLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKL 694
++ L+ ML D A + L S E N ML CG+ P EP L M+ + RA++L
Sbjct: 692 GMISSLNQMLVDRDVAYDVL-TKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQL 750
Query: 695 LELRTKTRIFIPSGRAMMGCLDETGTLEYGQVFVQFSNNRLGN------------QSLYV 742
LR K+RIF+ SGR +MG LDE G LE GQ FVQ S L N ++++V
Sbjct: 751 WGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKTVHV 810
Query: 743 ITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDCVVFPKKGSRPHPNECSGSDLDGDIY 802
+ G VV+AKNPCLHPGDVRVL+A++VP LHH+ DCVVFP+KG RPH +E SGSDLDGD+Y
Sbjct: 811 VKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSDLDGDLY 870
Query: 803 FVCWDSDLIP--SRTEQPMDYTAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTV 860
FV WD +LIP R+ PM+Y A + V ++++ ++F +VN+ LG I NAH V
Sbjct: 871 FVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICNAHVV 930
Query: 861 FADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSP 920
AD A+ E C+ L++L + AVDFPKTG +P L K YPDFM K +Y S
Sbjct: 931 HADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSK 990
Query: 921 NVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDYRLG 980
++G+L+R ++ F + +D D+EV G +++ DA+ + +YD +L
Sbjct: 991 KILGRLYRRIKDAYDKDIDAPEFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSYDGQLS 1050
Query: 981 NLMDYYGIKTEAEILSGNIMKMSKSFTKRRD--AEAITMAVRSLRKEARTWFNXXXXXXX 1038
L+ Y +KTE E+++G I M K ++++ E + + +L+KE R F
Sbjct: 1051 GLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIFEKLKSDVG 1110
Query: 1039 XXX--------XXXXXXWYYVTYH 1054
WY VTYH
Sbjct: 1111 ELSDKEKNLLYEQKASAWYQVTYH 1134
>Medtr3g107390.1 | RNA-dependent RNA polymerase family protein | HC |
chr3:49541314-49536090 | 20130731
Length = 1203
Score = 571 bits (1471), Expect = e-162, Method: Compositional matrix adjust.
Identities = 387/1104 (35%), Positives = 566/1104 (51%), Gaps = 134/1104 (12%)
Query: 41 KGRVPRAFAIIQFTSVESSADMMSRAN--SLWYGNSYLKVREMERDIVPKPRTFLHS--- 95
K P AF + FT +S+ + ++ A L LKV P+ FL+
Sbjct: 75 KKVAPHAF--VHFTLPDSATEALNAAGRCDLILNGKVLKVISG-----PQNPNFLNQRRR 127
Query: 96 ------LNNVKLSFGCQISKGRFSALWNTVNVEVNF--------------------GSGM 129
+++V + G +S F+ W + VNF G+
Sbjct: 128 TEAPFKMSDVIVEIGTLVSPADFTVAWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGI 187
Query: 130 RKWHFILSDNNVRYKLELSYENIWKLELHQPRGGIAKHLLIQLLGAPRIYKLNNPTSGNV 189
K I D +K+ +I +++ + + +L++L +P ++ ++
Sbjct: 188 GKQAVIKCD----FKVGFLIRDIEEIQRYDDTSHLV--VLLRLASSPLVWY--RTADDDI 239
Query: 190 YEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESAR 249
E +++ D D+ WIR DFTP IG+ + + +P P E R
Sbjct: 240 DESVTIDLLDD--DDPWIRTTDFTPSGAIGRCNYYRISIP-----PRHGAKLNKALEYLR 292
Query: 250 RCTVETGLPFSLNLRLVPIVAPPQ-------GI-------------EIPYDILFKVNSLV 289
R V +P+ PP+ G+ +I +DI+F +N++V
Sbjct: 293 RQRVPR----------IPLKRPPKIQNEPDFGVPMSDAFFYIDSQKDISFDIMFLINAIV 342
Query: 290 QHGCLAGPSLDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSK 349
G SL N F+ L+ D+ AL+ + K ++ K L E +L
Sbjct: 343 HRGIFNQYSLSNKFFELLKNQPKDVNVA--ALKHICTYKHPVFDAAKRL-EAVQKWLL-- 397
Query: 350 RPPRSPTISLDTG-LVYIRRAQVTPCKVYFCGPEINVSNRVLRHFREHIDNFLRVSFVDE 408
R P+ IS + ++ +RR VTP K Y PE+ +SNRVLR FRE D FLRV+F+DE
Sbjct: 398 RNPKFYQISKQSDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVSDRFLRVTFMDE 457
Query: 409 ELDKLYS-----------TDLSSRTDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQ 457
L + +++S + +QKT IY+R+ +IL +G +K+ FLAFSS+Q
Sbjct: 458 GQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGRKYSFLAFSSNQ 517
Query: 458 LRENSLWMFAPTTTGCTAAYIREWMGDFRRIRNVAKYAARLGQSFGSSTETLSVSRDEV- 516
LR+ S W FA T IR WMG F + +NVAK AAR+GQ F S+ ++ V +EV
Sbjct: 518 LRDRSAWFFA-EDKDITCDDIRNWMGRFNQ-KNVAKCAARMGQCFSSTYASVEVPANEVN 575
Query: 517 EIIPDVKVNDGRTEYVFSDGIGKISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDP 576
++PDV+ R YVFSDGIG I+ + A VA K + PSA+QIRY G+KGVVA P
Sbjct: 576 SMLPDVE----RNNYVFSDGIGIITTDLAVEVAEKLKLDKAPSAYQIRYAGFKGVVACWP 631
Query: 577 TSR--AKLSLRKSMHKYDSDNTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQR 634
KLSLR SM+K+ S +T L++ A ++FQP +LNRQ+ITLLS L V D +F K Q
Sbjct: 632 AKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIFWKMQE 691
Query: 635 DAVNQLDTMLTDSLKAQEALDLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKL 694
++ L+ ML D A + L S E N ML CG+ P EP L M+ + RA++L
Sbjct: 692 GMISSLNQMLVDRDVAYDVL-TKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQL 750
Query: 695 LELRTKTRIFIPSGRAMMGCLDETGTLEYGQVFVQFSNNRLGN------------QSLYV 742
LR K+RIF+ SGR +MG LDE G LE GQ FVQ S L N ++++V
Sbjct: 751 WGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKTVHV 810
Query: 743 ITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDCVVFPKKGSRPHPNECSGSDLDGDIY 802
+ G VV+AKNPCLHPGDVRVL+A++VP LHH+ DCVVFP+KG RPH +E SGSDLDGD+Y
Sbjct: 811 VKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSDLDGDLY 870
Query: 803 FVCWDSDLIP--SRTEQPMDYTAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTV 860
FV WD +LIP R+ PM+Y A + V ++++ ++F +VN+ LG I NAH V
Sbjct: 871 FVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICNAHVV 930
Query: 861 FADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSP 920
AD A+ E C+ L++L + AVDFPKTG +P L K YPDFM K +Y S
Sbjct: 931 HADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSK 990
Query: 921 NVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDYRLG 980
++G+L+R ++ F + +D D+EV G +++ DA+ + +YD +L
Sbjct: 991 KILGRLYRRIKDAYDKDIDAPEFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSYDGQLS 1050
Query: 981 NLMDYYGIKTEAEILSGNIMKMSKSFTKRRD--AEAITMAVRSLRKEARTWFNXXXXXXX 1038
L+ Y +KTE E+++G I M K ++++ E + + +L+KE R F
Sbjct: 1051 GLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIFEKLKSDVG 1110
Query: 1039 XXX--------XXXXXXWYYVTYH 1054
WY VTYH
Sbjct: 1111 ELSDKEKNLLYEQKASAWYQVTYH 1134
>Medtr6g088660.1 | RNA-dependent RNA polymerase family protein | HC
| chr6:33756998-33772645 | 20130731
Length = 974
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 146/610 (23%), Positives = 245/610 (40%), Gaps = 119/610 (19%)
Query: 466 FAPTTTGCTA----AYI--REWMGDFRR-------IRNVAKYAARLGQSFGSSTETLSVS 512
F T + C+A +YI + M D R + ++ KY AR S T TL+V
Sbjct: 282 FVRTESSCSADERESYILSNKTMSDCRSFFMHAHLLPSIEKYMARFSLIL-SKTYTLNVD 340
Query: 513 RDEVEI--IPDVKVNDG--------RTEYVFSDGIGKISHEFARSVARKC--GHNST--- 557
V + IPD DG E + +DG G IS + A+ + G N+
Sbjct: 341 FTTVVVQKIPDEYCRDGNGKVVYHNEKECILTDGTGFISEDLAKLCPQNVFKGTNTKNTY 400
Query: 558 --------------------------PSAFQIRY----GGYKGVVAVD-PTSRAKLSLRK 586
P Q R KG + V+ + + +R
Sbjct: 401 IKEISNLVDQDTSQAVGVTALSTHQPPLLIQCRLFHMGSAMKGTLLVNRKLPQNTIQVRP 460
Query: 587 SMHKYDSDN-------TKLDVLACS-KFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVN 638
SM K ++D+ L+V+ S K YL++ LI LLS GV + F + +
Sbjct: 461 SMIKVETDSLTNIPSLNSLEVVTTSQKPNRAYLSKYLIALLSFGGVPNEFFMDVLKRNLE 520
Query: 639 QLDTMLTDSLKAQEALDLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELR 698
+ + T+ A A + + N ML+CG P EPF+ + ++ LR
Sbjct: 521 DAEHIYTNKRAALRASVNHAEMDEYNAAG-MLLCGI-PLDEPFMRYHLSILAKTEKNRLR 578
Query: 699 TKTRIFIPSGRAMMGCLD--ETGTLEYGQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLH 756
++++ +MG +D E+ L+ QV + N + ITG V+V +NP LH
Sbjct: 579 A-GKLYLEDCFYVMGTVDPTESHCLKPNQVCIIHENGQ--------ITGDVLVYRNPGLH 629
Query: 757 PGDVRVLKAMNVPALHHMVD----CVVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDLI- 811
GD+ ++A V L V + FP G R +E +G D DGD+Y++ + L+
Sbjct: 630 FGDIHKMQATYVEELESYVGHGKYAIFFPCVGPRSIADEIAGGDFDGDMYWISKNPQLLQ 689
Query: 812 ------PSRTEQPMDYTAA-----PNMELDHDVMIEEVEEYF-TNYIVNDCLGIIANAHT 859
P P + + P+ ++ Y T + + +G+ A+
Sbjct: 690 YFKSSKPWIESPPCNSARSFCVKKPSELSAEELEEALFRLYLETRFQPSSAIGMAADGWM 749
Query: 860 VFADREPL---------KAMAEPCIKLSQLFSIAVDFPKTGVPAV-IPQELYCKEYPDFM 909
DR + + + E KL L+ A+D PK G + IP L + +P +M
Sbjct: 750 ALMDRLLILPNDRSIEKEQVKENIYKLIDLYYEALDAPKKGGGKMKIPSNLNVEMFPHYM 809
Query: 910 EKPDKPTYVSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDYVDDAY 969
E+ ++ S +++G ++ EV ++ S +K P +V+ MD ++ Y
Sbjct: 810 ER--NISFTSTSILGSIYDEVCRWQTTDMSGIVISKL-------PCFDVEIPMDRIE--Y 858
Query: 970 YHKGNYDYRL 979
+ K + YRL
Sbjct: 859 WGKLHKQYRL 868