Miyakogusa Predicted Gene

Lj2g3v1035930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1035930.1 Non Characterized Hit- tr|J3LKG8|J3LKG8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB03G1,67.11,2e-19,no
description,Helix-loop-helix domain; coiled-coil,NULL; HLH,
helix-loop-helix DNA-binding domain,H,CUFF.36064.1
         (92 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g011670.1 | transcription factor | HC | chr6:3400982-33979...   125   7e-30
Medtr7g010120.1 | transcription factor | HC | chr7:2400786-23982...   114   2e-26
Medtr5g039180.1 | transcription factor | HC | chr5:17227525-1722...   103   3e-23
Medtr3g438070.1 | transcription factor | HC | chr3:13020251-1302...   100   5e-22
Medtr7g059260.1 | helix loop helix DNA-binding domain protein | ...    52   1e-07

>Medtr6g011670.1 | transcription factor | HC |
          chr6:3400982-3397982 | 20130731
          Length = 92

 Score =  125 bits (315), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 66/71 (92%)

Query: 22 ELVSKLRQLVPEIRDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDSP 81
          ELVSKLRQLVPEIR RRSDKVSASKVL ETCNYIR+LHREVDDLSERLSQLL +ID DSP
Sbjct: 22 ELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDADSP 81

Query: 82 EAAIIRSLINQ 92
          EA IIRSLINQ
Sbjct: 82 EANIIRSLINQ 92


>Medtr7g010120.1 | transcription factor | HC |
          chr7:2400786-2398281 | 20130731
          Length = 93

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 64/71 (90%)

Query: 22 ELVSKLRQLVPEIRDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDSP 81
          +LV KLRQLVPEIR+RRSDKV ASKVL ETCNYIR+L REVDDLS RLSQLLA+ID DS 
Sbjct: 23 DLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSA 82

Query: 82 EAAIIRSLINQ 92
          EA+IIRSL+NQ
Sbjct: 83 EASIIRSLLNQ 93


>Medtr5g039180.1 | transcription factor | HC |
          chr5:17227525-17226057 | 20130731
          Length = 93

 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 62/69 (89%)

Query: 22 ELVSKLRQLVPEIRDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDSP 81
          +L+SKL+QL+PE+   RS+KVSA+KVL ETCNYI++LHREVDDLS+RLSQLLAS D +S 
Sbjct: 24 DLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLASTDSNSA 83

Query: 82 EAAIIRSLI 90
          +AAIIRSL+
Sbjct: 84 QAAIIRSLL 92


>Medtr3g438070.1 | transcription factor | HC |
          chr3:13020251-13021792 | 20130731
          Length = 92

 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 64/71 (90%), Gaps = 2/71 (2%)

Query: 22 ELVSKLRQLVPEIRDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASIDGDSP 81
          +LVSKL+QL+PEIR+R SDKVSAS+VL ETCNYIR+L+REVDDLSERLS+LLA+   D+ 
Sbjct: 24 DLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRNLNREVDDLSERLSELLAT--TDTA 81

Query: 82 EAAIIRSLINQ 92
          +AAIIR+L+ Q
Sbjct: 82 QAAIIRNLLMQ 92


>Medtr7g059260.1 | helix loop helix DNA-binding domain protein |
          HC | chr7:21404536-21402249 | 20130731
          Length = 89

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 45/56 (80%)

Query: 22 ELVSKLRQLVPEIRDRRSDKVSASKVLHETCNYIRSLHREVDDLSERLSQLLASID 77
          +LVS+L+ L+P++  R + + SASK+L ET N+IR L +EV+DLSERL+QL+ S+D
Sbjct: 19 DLVSRLQLLLPQLNQRNNSRQSASKILQETLNHIRRLQKEVEDLSERLTQLMDSVD 74