Miyakogusa Predicted Gene
- Lj2g3v1034670.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1034670.1 tr|G7L6Z5|G7L6Z5_MEDTR F-box family protein
OS=Medicago truncatula GN=MTR_8g044020 PE=4
SV=1,58.06,8e-18,GPROTEINBRPT,G-protein beta WD-40 repeat; seg,NULL;
WD_REPEATS_1,WD40 repeat, conserved site; WD40 r,CUFF.36063.1
(436 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g011500.1 | WD domain, G-beta repeat protein | HC | chr6:3... 401 e-112
Medtr8g044020.1 | hypothetical protein | LC | chr8:16850256-1685... 88 2e-17
Medtr6g011510.1 | hypothetical protein | LC | chr6:3290474-32899... 68 2e-11
Medtr8g104010.3 | stomatal cytokinesis defective protein, putati... 55 1e-07
Medtr8g104010.2 | stomatal cytokinesis defective protein, putati... 55 1e-07
Medtr8g104010.1 | stomatal cytokinesis defective protein, putati... 55 2e-07
Medtr2g436510.1 | PP1/PP2A phosphatase pleiotropic regulator PRL... 52 8e-07
Medtr4g119620.1 | transducin/WD40 repeat protein | HC | chr4:495... 50 4e-06
Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protei... 50 4e-06
Medtr2g012630.2 | katanin p80 WD40 repeat subunit B1-like protei... 50 6e-06
Medtr2g012630.1 | katanin p80 WD40 repeat subunit B1-like protei... 50 6e-06
>Medtr6g011500.1 | WD domain, G-beta repeat protein | HC |
chr6:3285166-3281035 | 20130731
Length = 376
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/358 (60%), Positives = 247/358 (68%), Gaps = 22/358 (6%)
Query: 87 QGSVVEMVNLDAYQEELGLAIRTLSDHRARITCMRLFSHDDMSLCRGETQGEQNVLVTSS 146
QGS M+ D +Q+ + A+ +S H ARITCMRLFS G QNVLVTSS
Sbjct: 15 QGSDAGMIIFDDHQDTV--AVHKMSGHNARITCMRLFS-----------LGGQNVLVTSS 61
Query: 147 CDHSIRLWWKGSCLRCLRGHNGPVXXXXXXXXXXXXXKVLASGGEDSTVRLWSLGSSGER 206
CD +I+LW KGS LR L+GHNGPV KVLASGGED TVRLWSL ++G+R
Sbjct: 62 CDRTIQLWSKGSNLRSLKGHNGPVLSLSNKLLGEEGSKVLASGGEDGTVRLWSLSANGKR 121
Query: 207 GKHALKATLYGHVKPVNFLSVAGHKTSLLVSMSRDSKVRVWDXXXXXXXXXX----XXXX 262
K ALKATLYGH KPVNFLSV+GHKTSLLV++S DSKVRVWD
Sbjct: 122 VKSALKATLYGHEKPVNFLSVSGHKTSLLVTISTDSKVRVWDTTASSSGRSSCVGMTNVR 181
Query: 263 GAPVNMKCHESLLYVAAGSSVTAVDLRTMHKVITIAVHPSKLYSFDAFPSKYLICTGSDD 322
GA VNM+CHESL+YVAAGSSVTAVDLRTM KVIT AVH SKLYSF PSK LI TG D
Sbjct: 182 GATVNMQCHESLVYVAAGSSVTAVDLRTMQKVITAAVHQSKLYSFGVVPSKSLIGTGGDG 241
Query: 323 RAMLWDIRRNQEPVKPELISELGGHRGPVTCLHMDPYKIITGGRIDECVNVWEVDTGVKI 382
RAMLWDIR+NQEP+KP I+EL GH GPVT LHMD YKI+TGG D VNVWEV+TGV
Sbjct: 242 RAMLWDIRKNQEPLKPVPIAELDGHSGPVTRLHMDSYKIVTGGPDDAYVNVWEVETGVLT 301
Query: 383 RPLLCFSGSKDMG---CDAMAVDGCRIITAS-YCRNLGILRFRDFNNATKPYPRTEDK 436
LCF +D+G CD M VDGCRI+TAS Y + G+ FRDF+NAT P + E++
Sbjct: 302 NSFLCFD-EEDIGGSFCDDMVVDGCRIVTASNYNDDWGVFSFRDFDNATIPATKLENE 358
>Medtr8g044020.1 | hypothetical protein | LC |
chr8:16850256-16850627 | 20130731
Length = 104
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/60 (70%), Positives = 46/60 (76%)
Query: 263 GAPVNMKCHESLLYVAAGSSVTAVDLRTMHKVITIAVHPSKLYSFDAFPSKYLICTGSDD 322
G PVNMKCHESL YVAAGSSV AVDLRTM V+T AVH ++ SF A SKYL+CTG D
Sbjct: 6 GTPVNMKCHESLCYVAAGSSVIAVDLRTMQNVVTAAVHRPEIRSFAAVTSKYLLCTGGYD 65
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 379 GVKIRPLLCFSGSKDMGCDAMAVDGCRIITASYCRNLGILRFRDFNNATKPYPRTED 435
V + LLC +G D CDAMAVDGCRI TA+Y LRFRDFNNAT+P + E+
Sbjct: 52 AVTSKYLLC-TGGYDDSCDAMAVDGCRIATATY----DTLRFRDFNNATRPAIKLEN 103
>Medtr6g011510.1 | hypothetical protein | LC | chr6:3290474-3289951
| 20130731
Length = 145
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 2 TSTVLKRVAYSDFIWQRFFTERWHQEIPXXXXXXXXXXXXXXELYVARYTDSQQFKFFDP 61
TST LK +AYSD +W F RW++E+P ELY++R+TD QFKF DP
Sbjct: 47 TSTALKHLAYSDPVWHSLFKNRWNRELP------DAAAVPAKELYISRHTDLHQFKFRDP 100
Query: 62 LGLDVLLE---PKRFTQLLLHENHAYSAQ 87
V + K F L+LH N+ + +Q
Sbjct: 101 FVRTVHFDGRASKPFNHLILHHNNVFFSQ 129
>Medtr8g104010.3 | stomatal cytokinesis defective protein, putative
| HC | chr8:43792477-43779326 | 20130731
Length = 846
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 25/242 (10%)
Query: 160 LRCLRGHNGPVXXXXXXXXXXXXXKV--------LASGGEDSTVRLWSLGSSGERGKHAL 211
+R LRGHNG + V SG D +V++W G L
Sbjct: 487 VRMLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSE----L 542
Query: 212 KATLYGHVKPVNFLSVAGHKTSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXG--APVNMK 269
+ATL GH + V +S K +VS S D V VWD G + V
Sbjct: 543 RATLKGHTRTVRAISSDRGK---VVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRTL 599
Query: 270 CHESLLYVAAGSSVTAVDLRTMHKVITIAVHPSKLYSFDAFPS-KYLICTGSDDRAMLWD 328
E +L + +V D+RT V T+ S + + + L G D A +WD
Sbjct: 600 SGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGILAAAGRDVVANMWD 659
Query: 329 IRRNQEPVKPELISELGGHRGPVTCLHMDPYKIITGGRIDECVNVWEVDTGVKIRPLLCF 388
IR +++ + +L GH + L M +ITG D +W V G L C
Sbjct: 660 IRASRQ------MHKLSGHTQWIRSLRMVGDTVITGSD-DWTARIWSVSRGTCDAVLACH 712
Query: 389 SG 390
+G
Sbjct: 713 AG 714
>Medtr8g104010.2 | stomatal cytokinesis defective protein, putative
| HC | chr8:43793799-43779326 | 20130731
Length = 929
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 25/242 (10%)
Query: 160 LRCLRGHNGPVXXXXXXXXXXXXXKV--------LASGGEDSTVRLWSLGSSGERGKHAL 211
+R LRGHNG + V SG D +V++W G L
Sbjct: 570 VRMLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSE----L 625
Query: 212 KATLYGHVKPVNFLSVAGHKTSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXG--APVNMK 269
+ATL GH + V +S K +VS S D V VWD G + V
Sbjct: 626 RATLKGHTRTVRAISSDRGK---VVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRTL 682
Query: 270 CHESLLYVAAGSSVTAVDLRTMHKVITIAVHPSKLYSFDAFPS-KYLICTGSDDRAMLWD 328
E +L + +V D+RT V T+ S + + + L G D A +WD
Sbjct: 683 SGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGILAAAGRDVVANMWD 742
Query: 329 IRRNQEPVKPELISELGGHRGPVTCLHMDPYKIITGGRIDECVNVWEVDTGVKIRPLLCF 388
IR +++ + +L GH + L M +ITG D +W V G L C
Sbjct: 743 IRASRQ------MHKLSGHTQWIRSLRMVGDTVITGSD-DWTARIWSVSRGTCDAVLACH 795
Query: 389 SG 390
+G
Sbjct: 796 AG 797
>Medtr8g104010.1 | stomatal cytokinesis defective protein, putative |
HC | chr8:43797022-43779326 | 20130731
Length = 1209
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 105/272 (38%), Gaps = 30/272 (11%)
Query: 160 LRCLRGHNGPVXXXXXXXXXXXXXKV--------LASGGEDSTVRLWSLGSSGERGKHAL 211
+R LRGHNG + V SG D +V++W G L
Sbjct: 850 VRMLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSE----L 905
Query: 212 KATLYGHVKPVNFLSVAGHKTSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXG--APVNMK 269
+ATL GH + V +S K +VS S D V VWD G + V
Sbjct: 906 RATLKGHTRTVRAISSDRGK---VVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRTL 962
Query: 270 CHESLLYVAAGSSVTAVDLRTMHKVITIAVHPSKLYSFDAFPS-KYLICTGSDDRAMLWD 328
E +L + +V D+RT V T+ S + + + L G D A +WD
Sbjct: 963 SGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGILAAAGRDVVANMWD 1022
Query: 329 IRRNQEPVKPELISELGGHRGPVTCLHMDPYKIITGGRIDECVNVWEVDTGVKIRPLLCF 388
IR +++ + +L GH + L M +ITG D +W V G L C
Sbjct: 1023 IRASRQ------MHKLSGHTQWIRSLRMVGDTVITGSD-DWTARIWSVSRGTCDAVLACH 1075
Query: 389 SGSKDMGCDAMAVDGCRIITASYCRNLGILRF 420
+G + C + IIT S G+LRF
Sbjct: 1076 AGP--ILCVEYSSLDRGIITGS---TDGLLRF 1102
>Medtr2g436510.1 | PP1/PP2A phosphatase pleiotropic regulator PRL1 |
HC | chr2:14198159-14190457 | 20130731
Length = 480
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 186 LASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGHKTSLLVSMSRDSKVR 245
A+G D T+++W L S LK TL GH++ V L+++ HK + + S D +V+
Sbjct: 185 FATGSADRTIKIWDLASG------VLKLTLTGHIEQVRGLAIS-HKHTYMFSAGDDKQVK 237
Query: 246 VWDXXXXXXXXXXXXXXGAPVNMKCHES--LLYVAAGSSVTAV-DLRTMHKVITIAVHPS 302
WD + H + +L SV V D+R+ ++ ++ H +
Sbjct: 238 CWDLEQNKVIRSYHGHLSGVYCLAIHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHEN 297
Query: 303 KLYSFDAFPSKYLICTGSDDRAM-LWDIRRNQEPVKPELISELGGHRGPVTCLHMDP 358
+ S P+ + TGS D + +WD+R + +S L H+ V + P
Sbjct: 298 TVCSVFTRPTDPQVVTGSHDSTIKMWDLRYGK------TMSTLTNHKKSVRAMAQHP 348
>Medtr4g119620.1 | transducin/WD40 repeat protein | HC |
chr4:49575751-49578750 | 20130731
Length = 326
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 124/324 (38%), Gaps = 35/324 (10%)
Query: 69 EPKRFTQLLLHENHA-----YSAQGSVVEMVNLDAYQEELGLAIRTLSDHRARITCMRLF 123
+P +Q L A +S+ G ++ + D G + ++ M+ +
Sbjct: 15 KPYTLSQTLTGHKRAISAVKFSSNGRLLASSSADKTLRTYGFTNSDSDSNSLTLSPMQQY 74
Query: 124 SHDDMSLCRGETQGEQNVLVTSSCDHSIRLW--WKGSCLRCLRGHNGPVXXXXXXXXXXX 181
+ + LV++S D +IRLW GS ++ L GH V
Sbjct: 75 EGHQHGVSDLAFSSDSRYLVSASDDKTIRLWDVPTGSLVKTLHGHTNYVFCVNFNPQS-- 132
Query: 182 XXKVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKPVNFLSVAGHKTSLLVSMSRD 241
V+ SG D TVR+W + S GK LK L H PV + T L+VS S D
Sbjct: 133 --NVIVSGSFDETVRVWDVKS----GK-CLKV-LPAHSDPVTAVDFNRDGT-LIVSSSYD 183
Query: 242 SKVRVWDXXXXXXXXXXXXXXGAPVN-MKCHESLLYVAAGSSVTAVDL---RTMHKVITI 297
R+WD PV+ +K + ++ G+ + L T + T
Sbjct: 184 GLCRIWDASTGHCIKTLIDDENPPVSYVKFSPNAKFILVGTLDNNLRLWNYSTGKFLKTY 243
Query: 298 AVHPSKLY----SFDAFPSKYLICTGSDDRAMLWDIRRNQEPVKPELISELGGHRGPVTC 353
H + Y SF KY++ D+ LW ++ + ++ +L GH V
Sbjct: 244 TGHVNSKYCISSSFSITNGKYVVGGSEDNCIYLWGLQSRK------IVQKLEGHTDSVVS 297
Query: 354 LHMDPYK-IITGGRI--DECVNVW 374
+ P + +I G + D+ V +W
Sbjct: 298 VSCHPTENMIASGALGNDKTVKIW 321
>Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protein |
HC | chr6:91770-77124 | 20130731
Length = 760
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 184 KVLASGGEDSTVRLWSLGSSGERGKHALKATLYGH---VKPVNFLSVAGHKTSLLVSMSR 240
+VL +GGED V LW++ GK +L GH + VNF S L+ + +
Sbjct: 30 RVLVTGGEDHKVNLWAI------GKPNAILSLSGHSSGIDSVNFDS----SEVLVAAGAA 79
Query: 241 DSKVRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAGSSVTAV---DLRTMHKVITI 297
+++WD ++ H + A+GS T + D+R + T
Sbjct: 80 SGTIKLWDLEEAKIVRTLTGHRSNCTSVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139
Query: 298 AVHPSKLYSFDAFP-SKYLICTGSDDRAMLWDIRRNQEPVKPELISELGGHRGPVTCLHM 356
H + + P ++++ G D+ LWD+ + L+ + H G + C+
Sbjct: 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK------LLHDFKSHEGQIQCIDF 193
Query: 357 DPYK-IITGGRIDECVNVWEVDT 378
P + ++ G D V W+++T
Sbjct: 194 HPSEFLLATGSADRTVKFWDLET 216
>Medtr2g012630.2 | katanin p80 WD40 repeat subunit B1-like protein |
HC | chr2:3190921-3179833 | 20130731
Length = 1030
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 115/327 (35%), Gaps = 59/327 (18%)
Query: 104 GLAIRTLSDHRARITCMRLFSHDDMSLCRGETQGEQNVLVTSSCDHSIRLWW--KGSCLR 161
G I+ H + + C+ + CR + VT DH + LW K + L
Sbjct: 5 GYKIQEFVAHSSNVNCLNI----GKKACR--------LFVTGGDDHKVNLWTIGKPTSLS 52
Query: 162 CLRGHNGPVXXXXXXXXXXXXXKVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKP 221
L GH PV ++ +G +RLW L S + T+ GH
Sbjct: 53 SLSGHTSPVESVTFDSGEV----LVLAGSTSGVIRLWDLEES------KMVRTVAGHRS- 101
Query: 222 VNFLSVAGHK-TSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAG 280
N SV H S S D+ +++WD +K +V +G
Sbjct: 102 -NCTSVEFHPFGEFFASGSMDTNLKIWDNRKKGCIHTYKGHSQGISTIKFTPDGRWVVSG 160
Query: 281 ---SSVTAVDLRTMHKVITIAVHPSKLYSFDAFPSKYLICTGSDDRAM-LWDIRRNQEPV 336
+ V DL + H + S D P ++L+ TGS DR + WD+
Sbjct: 161 GFDNVVKVWDLTAGKLLHDFNFHDGHITSLDFHPLEFLLATGSADRTVKFWDL------- 213
Query: 337 KPELISELGGHRGPVT-----CLHMDPYKIITGGRIDECVNVWEVDTGVKIRPLLCFSGS 391
E +G R T H D + +G V WE P++C +
Sbjct: 214 --ESFELIGSARREATGVRSMAFHPDGRTLFSGHEDGLKVFSWE--------PVICHD-T 262
Query: 392 KDMGCDAMAVDGC----RIITASYCRN 414
DMG + D C +++ SY RN
Sbjct: 263 VDMGWTKLG-DLCIHDGKLLGCSYYRN 288
>Medtr2g012630.1 | katanin p80 WD40 repeat subunit B1-like protein |
HC | chr2:3190941-3179834 | 20130731
Length = 1111
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 115/327 (35%), Gaps = 59/327 (18%)
Query: 104 GLAIRTLSDHRARITCMRLFSHDDMSLCRGETQGEQNVLVTSSCDHSIRLWW--KGSCLR 161
G I+ H + + C+ + CR + VT DH + LW K + L
Sbjct: 5 GYKIQEFVAHSSNVNCLNI----GKKACR--------LFVTGGDDHKVNLWTIGKPTSLS 52
Query: 162 CLRGHNGPVXXXXXXXXXXXXXKVLASGGEDSTVRLWSLGSSGERGKHALKATLYGHVKP 221
L GH PV ++ +G +RLW L S + T+ GH
Sbjct: 53 SLSGHTSPVESVTFDSGEV----LVLAGSTSGVIRLWDLEES------KMVRTVAGHRS- 101
Query: 222 VNFLSVAGHK-TSLLVSMSRDSKVRVWDXXXXXXXXXXXXXXGAPVNMKCHESLLYVAAG 280
N SV H S S D+ +++WD +K +V +G
Sbjct: 102 -NCTSVEFHPFGEFFASGSMDTNLKIWDNRKKGCIHTYKGHSQGISTIKFTPDGRWVVSG 160
Query: 281 ---SSVTAVDLRTMHKVITIAVHPSKLYSFDAFPSKYLICTGSDDRAM-LWDIRRNQEPV 336
+ V DL + H + S D P ++L+ TGS DR + WD+
Sbjct: 161 GFDNVVKVWDLTAGKLLHDFNFHDGHITSLDFHPLEFLLATGSADRTVKFWDL------- 213
Query: 337 KPELISELGGHRGPVT-----CLHMDPYKIITGGRIDECVNVWEVDTGVKIRPLLCFSGS 391
E +G R T H D + +G V WE P++C +
Sbjct: 214 --ESFELIGSARREATGVRSMAFHPDGRTLFSGHEDGLKVFSWE--------PVICHD-T 262
Query: 392 KDMGCDAMAVDGC----RIITASYCRN 414
DMG + D C +++ SY RN
Sbjct: 263 VDMGWTKLG-DLCIHDGKLLGCSYYRN 288