Miyakogusa Predicted Gene
- Lj2g3v1034410.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1034410.2 Non Characterized Hit- tr|I1N5X8|I1N5X8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,80.54,0,CRS1_YhbY,RNA-binding, CRM domain; seg,NULL; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.36052.2
(150 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | H... 232 1e-61
Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:524... 138 2e-33
Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 137 4e-33
Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 137 4e-33
Medtr2g100660.1 | group IIA intron splicing facilitator CRS1 | H... 130 4e-31
Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC ... 127 4e-30
Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC ... 126 8e-30
Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC ... 125 1e-29
Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC | chr6:315... 121 2e-28
Medtr8g066010.1 | group IIA intron splicing facilitator CRS1 | H... 113 6e-26
>Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | HC |
chr6:2256928-2245549 | 20130731
Length = 1045
Score = 232 bits (591), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 120/137 (87%)
Query: 14 HSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLVGLGPRFT 73
HSSE +S +AG SS KT KPAL+QGVGTPN+VRFQLPGEAEL E+ DSLL GLGPRFT
Sbjct: 273 HSSEMSSATHAGQSSNIKTVKPALVQGVGTPNRVRFQLPGEAELLEEVDSLLEGLGPRFT 332
Query: 74 DWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIPSHFALGR 133
DWWGY+P+PVDADLLPAV+PG+R PFRLLPYGV+ KLTDDEMTTL+RL R +P HFALGR
Sbjct: 333 DWWGYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDEMTTLKRLGRTLPCHFALGR 392
Query: 134 NRKLQGLAAAIIKLWER 150
N KLQG+AAAIIK WER
Sbjct: 393 NWKLQGVAAAIIKFWER 409
>Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC |
chr4:52429589-52424702 | 20130731
Length = 744
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 71/86 (82%)
Query: 64 LLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSR 123
LL LGPRF DW G EPLPVDAD LPAVVPGY+ PFRLLPYGVKP L++ EMT +RR+SR
Sbjct: 331 LLDELGPRFNDWTGREPLPVDADQLPAVVPGYKTPFRLLPYGVKPCLSNKEMTDMRRVSR 390
Query: 124 PIPSHFALGRNRKLQGLAAAIIKLWE 149
HFALGRNR+LQGLA AI+KLWE
Sbjct: 391 RTAPHFALGRNRELQGLARAIVKLWE 416
>Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33263693-33269751 | 20130731
Length = 838
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 77/92 (83%)
Query: 59 EDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTL 118
++ D LL GLGPR+TDW G EPLPVDAD+LP VPGY+ PFR+LP+GV+P L E T+L
Sbjct: 366 DEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSL 425
Query: 119 RRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 150
RR++R +P HFALGRNR+LQGLAAA+IKLWE+
Sbjct: 426 RRIARGLPPHFALGRNRQLQGLAAAMIKLWEK 457
>Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33243553-33249532 | 20130731
Length = 838
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 77/92 (83%)
Query: 59 EDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTL 118
++ D LL GLGPR+TDW G EPLPVDAD+LP VPGY+ PFR+LP+GV+P L E T+L
Sbjct: 366 DEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSL 425
Query: 119 RRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 150
RR++R +P HFALGRNR+LQGLAAA+IKLWE+
Sbjct: 426 RRIARGLPPHFALGRNRQLQGLAAAMIKLWEK 457
>Medtr2g100660.1 | group IIA intron splicing facilitator CRS1 | HC |
chr2:43276481-43269840 | 20130731
Length = 794
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
Query: 52 PGEAELAE-DADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKL 110
P L E + D LL GLGPRF DWW ++PLPVDADLLP VVPG+ P R+ P KL
Sbjct: 323 PANGSLYERECDRLLDGLGPRFIDWWMHKPLPVDADLLPEVVPGFEPPLRICPPHASAKL 382
Query: 111 TDDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 150
TD E+T RR+S P+P+HF LGRNR LQGLAAAI+KLW +
Sbjct: 383 TDGELTYFRRISHPLPTHFVLGRNRGLQGLAAAILKLWHK 422
>Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 523
Score = 127 bits (319), Expect = 4e-30, Method: Composition-based stats.
Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
Query: 52 PGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLT 111
P EAE + +L GPRF DWWG LPVDADLLP +PGYR P R+LP + P+LT
Sbjct: 226 PEEAEF----NRMLDDFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLT 281
Query: 112 DDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 150
+DE T + +L++ +P HFALGRNR LQGLA AI+KLWE+
Sbjct: 282 NDEHTKMLKLAKALPCHFALGRNRNLQGLACAILKLWEK 320
>Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43952280 | 20130731
Length = 463
Score = 126 bits (316), Expect = 8e-30, Method: Composition-based stats.
Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
Query: 52 PGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLT 111
P EAE + +L GPRF DWWG LPVDADLLP +PGYR P R+LP + P+LT
Sbjct: 226 PEEAEF----NRMLDDFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLT 281
Query: 112 DDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 150
+DE T + +L++ +P HFALGRNR LQGLA AI+KLWE+
Sbjct: 282 NDEHTKMLKLAKALPCHFALGRNRNLQGLACAILKLWEK 320
>Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 634
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
Query: 52 PGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLT 111
P EAE + +L GPRF DWWG LPVDADLLP +PGYR P R+LP + P+LT
Sbjct: 226 PEEAEF----NRMLDDFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLT 281
Query: 112 DDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 150
+DE T + +L++ +P HFALGRNR LQGLA AI+KLWE+
Sbjct: 282 NDEHTKMLKLAKALPCHFALGRNRNLQGLACAILKLWEK 320
>Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC |
chr6:31586826-31594407 | 20130731
Length = 820
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Query: 28 SYSKTSKPALIQGVGTPNKV--RFQLPGE-AELAEDADSLLVGLGPRFTDWWGYEPLPVD 84
S SKT + +V +LP + E + ++LL LGPRF WWG PVD
Sbjct: 325 SLSKTKDSNATSSLENSEQVGRNVELPEKMTEEEAEYNALLDDLGPRFVGWWGTGIPPVD 384
Query: 85 ADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAI 144
ADLLP VPGY+ P+RLLP G++ +LT EMT LR++++ +P HFALGRNR QGLA AI
Sbjct: 385 ADLLPREVPGYKTPYRLLPTGMRSRLTGAEMTDLRKIAKSLPCHFALGRNRNHQGLACAI 444
Query: 145 IKLWER 150
+KLWER
Sbjct: 445 LKLWER 450
>Medtr8g066010.1 | group IIA intron splicing facilitator CRS1 | HC |
chr8:27412601-27414644 | 20130731
Length = 373
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 62/86 (72%), Gaps = 7/86 (8%)
Query: 64 LLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSR 123
LL LGPRF DW G EPL VDAD LP VVPGY+ PFRLLPYGVKP L++ EMT +RR++R
Sbjct: 134 LLDELGPRFKDWTGREPLTVDADQLPVVVPGYKTPFRLLPYGVKPCLSNKEMTVMRRIAR 193
Query: 124 PIPSHFALGRNRKLQGLAAAIIKLWE 149
HFAL GLA AI+KLWE
Sbjct: 194 RTALHFAL-------GLARAIVKLWE 212