Miyakogusa Predicted Gene

Lj2g3v1034410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1034410.1 Non Characterized Hit- tr|J3LYN5|J3LYN5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G2,60.32,0.0000000000007,no description,RNA-binding, CRM
domain; seg,NULL; CRM,RNA-binding, CRM domain; SUBFAMILY NOT
NAMED,N,CUFF.36052.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | H...   316   9e-87
Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332...   176   2e-44
Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332...   176   2e-44
Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:524...   174   4e-44
Medtr2g100660.1 | group IIA intron splicing facilitator CRS1 | H...   150   5e-37
Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC | chr6:315...   149   2e-36
Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC ...   147   5e-36
Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC ...   147   6e-36
Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC ...   147   6e-36
Medtr8g066010.1 | group IIA intron splicing facilitator CRS1 | H...   142   3e-34

>Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | HC |
           chr6:2256928-2245549 | 20130731
          Length = 1045

 Score =  316 bits (810), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 167/204 (81%), Gaps = 1/204 (0%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MKRTHD+LERKTGGLVVWRSGSKIILYRG DYKYPYFLSD V R+E   DA Q M     
Sbjct: 207 MKRTHDILERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDEVLREEE-SDALQPMDSDDE 265

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                  HSSE +S  +AG SS  KT KPAL+QGVGTPN+VRFQLPGEAEL E+ DSLL 
Sbjct: 266 SIDERKTHSSEMSSATHAGQSSNIKTVKPALVQGVGTPNRVRFQLPGEAELLEEVDSLLE 325

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
           GLGPRFTDWWGY+P+PVDADLLPAV+PG+R PFRLLPYGV+ KLTDDEMTTL+RL R +P
Sbjct: 326 GLGPRFTDWWGYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDEMTTLKRLGRTLP 385

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFALGRN KLQG+AAAIIK WER
Sbjct: 386 CHFALGRNWKLQGVAAAIIKFWER 409


>Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC |
           chr1:33263693-33269751 | 20130731
          Length = 838

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/205 (47%), Positives = 130/205 (63%), Gaps = 15/205 (7%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHI-GDAEQHMXXXX 59
           MKR H++LE+KTGGLV+WRSG+ + LYRG  YK P     ++ +++ +    E+ +    
Sbjct: 267 MKRMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDP-----SIQQNKQLYRKNEKSLKFLS 321

Query: 60  XXXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLL 119
                     SE  ++      S +KTS   L        KV   LP +    ++ D LL
Sbjct: 322 APSDDFEVEPSEFTTD------SETKTSLEKLESTNDQKEKV--NLP-KISYEDEVDKLL 372

Query: 120 VGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPI 179
            GLGPR+TDW G EPLPVDAD+LP  VPGY+ PFR+LP+GV+P L   E T+LRR++R +
Sbjct: 373 DGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSLRRIARGL 432

Query: 180 PSHFALGRNRKLQGLAAAIIKLWER 204
           P HFALGRNR+LQGLAAA+IKLWE+
Sbjct: 433 PPHFALGRNRQLQGLAAAMIKLWEK 457


>Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC |
           chr1:33243553-33249532 | 20130731
          Length = 838

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/205 (47%), Positives = 130/205 (63%), Gaps = 15/205 (7%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHI-GDAEQHMXXXX 59
           MKR H++LE+KTGGLV+WRSG+ + LYRG  YK P     ++ +++ +    E+ +    
Sbjct: 267 MKRMHEILEKKTGGLVIWRSGNSVSLYRGVSYKDP-----SIQQNKQLYRKNEKSLKFLS 321

Query: 60  XXXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLL 119
                     SE  ++      S +KTS   L        KV   LP +    ++ D LL
Sbjct: 322 APSDDFEVEPSEFTTD------SETKTSLEKLESTNDQKEKV--NLP-KISYEDEVDKLL 372

Query: 120 VGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPI 179
            GLGPR+TDW G EPLPVDAD+LP  VPGY+ PFR+LP+GV+P L   E T+LRR++R +
Sbjct: 373 DGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSLRRIARGL 432

Query: 180 PSHFALGRNRKLQGLAAAIIKLWER 204
           P HFALGRNR+LQGLAAA+IKLWE+
Sbjct: 433 PPHFALGRNRQLQGLAAAMIKLWEK 457


>Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC |
           chr4:52429589-52424702 | 20130731
          Length = 744

 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 123/207 (59%), Gaps = 25/207 (12%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MKR H +LE KTGG+VVWRSGS I+LYRG  YK P   S T      + +A+++      
Sbjct: 231 MKRAHQILESKTGGIVVWRSGSSIVLYRGMSYKLPCIESYT-----KVYNAKENA----- 280

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLP--GEAELAE--DAD 116
                       ++ +  G  S  + S   ++  +         L    E E  E  + +
Sbjct: 281 -----------VDNSVDVGSGSSVEVSVKEMVGPIDFNRDSAEYLKDMSEEESMELIELN 329

Query: 117 SLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLS 176
            LL  LGPRF DW G EPLPVDAD LPAVVPGY+ PFRLLPYGVKP L++ EMT +RR+S
Sbjct: 330 LLLDELGPRFNDWTGREPLPVDADQLPAVVPGYKTPFRLLPYGVKPCLSNKEMTDMRRVS 389

Query: 177 RPIPSHFALGRNRKLQGLAAAIIKLWE 203
           R    HFALGRNR+LQGLA AI+KLWE
Sbjct: 390 RRTAPHFALGRNRELQGLARAIVKLWE 416


>Medtr2g100660.1 | group IIA intron splicing facilitator CRS1 | HC |
           chr2:43276481-43269840 | 20130731
          Length = 794

 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 114/209 (54%), Gaps = 13/209 (6%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSR----DEHIGDAEQHMX 56
           M R  +++E KTGGLVVW     +++YRG +YK     S  +             E +  
Sbjct: 222 MDRAREIVEMKTGGLVVWSKKDALVVYRGCNYKLTSKGSTKIDTGYIPSRKTNSYEMNGV 281

Query: 57  XXXXXXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAE-DA 115
                       S  + SE+     S++   K +L   +   N   +Q P    L E + 
Sbjct: 282 KLATIGDLYRAESDRSTSEL----PSWNADHKHSLSTDIHDMN---YQ-PANGSLYEREC 333

Query: 116 DSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRL 175
           D LL GLGPRF DWW ++PLPVDADLLP VVPG+  P R+ P     KLTD E+T  RR+
Sbjct: 334 DRLLDGLGPRFIDWWMHKPLPVDADLLPEVVPGFEPPLRICPPHASAKLTDGELTYFRRI 393

Query: 176 SRPIPSHFALGRNRKLQGLAAAIIKLWER 204
           S P+P+HF LGRNR LQGLAAAI+KLW +
Sbjct: 394 SHPLPTHFVLGRNRGLQGLAAAILKLWHK 422


>Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC |
           chr6:31586826-31594407 | 20130731
          Length = 820

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 118/204 (57%), Gaps = 22/204 (10%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           M+  H ++ER+TGGLV WR+GS +I+YRG +Y+ P     +   D   GD          
Sbjct: 269 MRIAHQIVERRTGGLVTWRAGSVMIVYRGKNYQGPA----SPELDVKEGDG--------- 315

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                   SS + S+    +++ S  +   + + V  P K+        E   + ++LL 
Sbjct: 316 --FFVPDVSSGSLSKTKDSNATSSLENSEQVGRNVELPEKM-------TEEEAEYNALLD 366

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
            LGPRF  WWG    PVDADLLP  VPGY+ P+RLLP G++ +LT  EMT LR++++ +P
Sbjct: 367 DLGPRFVGWWGTGIPPVDADLLPREVPGYKTPYRLLPTGMRSRLTGAEMTDLRKIAKSLP 426

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFALGRNR  QGLA AI+KLWER
Sbjct: 427 CHFALGRNRNHQGLACAILKLWER 450


>Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC |
           chr8:43946209-43953260 | 20130731
          Length = 523

 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 81/204 (39%), Positives = 107/204 (52%), Gaps = 45/204 (22%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           M   H++++R+TGGLV+WRSGS + +YRG  Y+ P                         
Sbjct: 162 MNLAHNIVQRRTGGLVIWRSGSVMWVYRGKSYQGP------------------------- 196

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                      TN   +       K+    L Q    P  +    P EAE     + +L 
Sbjct: 197 -----------TNGNQHESKGGDEKSESVVLNQQ--QPENM---TPEEAEF----NRMLD 236

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
             GPRF DWWG   LPVDADLLP  +PGYR P R+LP  + P+LT+DE T + +L++ +P
Sbjct: 237 DFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLTNDEHTKMLKLAKALP 296

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFALGRNR LQGLA AI+KLWE+
Sbjct: 297 CHFALGRNRNLQGLACAILKLWEK 320


>Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC |
           chr8:43946209-43953260 | 20130731
          Length = 634

 Score =  147 bits (371), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/204 (39%), Positives = 107/204 (52%), Gaps = 45/204 (22%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           M   H++++R+TGGLV+WRSGS + +YRG  Y+ P                         
Sbjct: 162 MNLAHNIVQRRTGGLVIWRSGSVMWVYRGKSYQGP------------------------- 196

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                      TN   +       K+    L Q    P  +    P EAE     + +L 
Sbjct: 197 -----------TNGNQHESKGGDEKSESVVLNQQ--QPENM---TPEEAEF----NRMLD 236

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
             GPRF DWWG   LPVDADLLP  +PGYR P R+LP  + P+LT+DE T + +L++ +P
Sbjct: 237 DFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLTNDEHTKMLKLAKALP 296

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFALGRNR LQGLA AI+KLWE+
Sbjct: 297 CHFALGRNRNLQGLACAILKLWEK 320


>Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC |
           chr8:43946209-43952280 | 20130731
          Length = 463

 Score =  147 bits (371), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/204 (39%), Positives = 107/204 (52%), Gaps = 45/204 (22%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           M   H++++R+TGGLV+WRSGS + +YRG  Y+ P                         
Sbjct: 162 MNLAHNIVQRRTGGLVIWRSGSVMWVYRGKSYQGP------------------------- 196

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                      TN   +       K+    L Q    P  +    P EAE     + +L 
Sbjct: 197 -----------TNGNQHESKGGDEKSESVVLNQQ--QPENM---TPEEAEF----NRMLD 236

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
             GPRF DWWG   LPVDADLLP  +PGYR P R+LP  + P+LT+DE T + +L++ +P
Sbjct: 237 DFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLTNDEHTKMLKLAKALP 296

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFALGRNR LQGLA AI+KLWE+
Sbjct: 297 CHFALGRNRNLQGLACAILKLWEK 320


>Medtr8g066010.1 | group IIA intron splicing facilitator CRS1 | HC |
           chr8:27412601-27414644 | 20130731
          Length = 373

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 106/203 (52%), Gaps = 36/203 (17%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MKR + +LE KTGG+VVWR GS I+LYRG  YK P   S T   + +    +  +     
Sbjct: 46  MKRANQILESKTGGIVVWRLGSSIVLYRGMSYKLPCVESYTKVYNANENAVDNSVDVRSG 105

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                   S E NS  Y    S  + S  ++                        + LL 
Sbjct: 106 S-------SVEVNSAEYLKDMSEEEESMESI----------------------KLNLLLD 136

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
            LGPRF DW G EPL VDAD LP VVPGY+ PFRLLPYGVKP L++ EMT +RR++R   
Sbjct: 137 ELGPRFKDWTGREPLTVDADQLPVVVPGYKTPFRLLPYGVKPCLSNKEMTVMRRIARRTA 196

Query: 181 SHFALGRNRKLQGLAAAIIKLWE 203
            HFAL       GLA AI+KLWE
Sbjct: 197 LHFAL-------GLARAIVKLWE 212