Miyakogusa Predicted Gene

Lj2g3v1022600.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1022600.4 CUFF.35985.4
         (316 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g009400.1 | rRNA methyltransferase YlbH-like protein, puta...   448   e-126

>Medtr6g009400.1 | rRNA methyltransferase YlbH-like protein,
           putative | HC | chr6:2769483-2765484 | 20130731
          Length = 325

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/264 (84%), Positives = 234/264 (88%), Gaps = 1/264 (0%)

Query: 54  GNGLASEDKKILLERYGYDADADEYFSQSSPKSKRIK-EQPRTRGGKQVQDPPEGPKPHR 112
           GNGLASE+KKILLERYGYD DAD+YF QSS    + K EQ +TRGGKQVQDPP  PKP R
Sbjct: 54  GNGLASEEKKILLERYGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113

Query: 113 TTHKLLQVLGGTARRKKLLSPKGMDVRPMMEVVKGATFDILQAAGGSPASLRPGRWLDLY 172
           TTHKLLQV+GGTARR KLLSPK MDVRPMMEVVKGA FDILQAAGGSPASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173

Query: 173 SGTGSVGIEALSRGCCEVHFVEMDPWVVSDVLRPNLEGTGFLDASVIHTVTVEKFFERGK 232
           SGTGSVGIEALSRGC EVHFVEMDPWVVSDVLRPNLE TGF+D SVIHTV VEKFFER +
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233

Query: 233 QFVGNYGPFDYISVTPPYTQVDYGVLMRQISESSLVGEDAFIVVEYPSKTDMLDSCGHLV 292
           QFVGN   FDYISVTPPY +VDY VLMR ISES  VG+D FIVVEYPSKTDML+SCG LV
Sbjct: 234 QFVGNNDTFDYISVTPPYAEVDYVVLMRLISESPFVGDDTFIVVEYPSKTDMLESCGPLV 293

Query: 293 KITDRRFGRTLLAIYGPTWAQKKR 316
           KITDRRFGRTLLAIYGPTWAQKKR
Sbjct: 294 KITDRRFGRTLLAIYGPTWAQKKR 317