Miyakogusa Predicted Gene

Lj2g3v1022600.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1022600.3 tr|B9IJP9|B9IJP9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_577541 PE=4
SV=1,50.51,0.000000000000005,seg,NULL,CUFF.35985.3
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g009390.1 | Clavata3/ESR (CLE) gene family member MtCLE02 ...   102   6e-23

>Medtr6g009390.1 | Clavata3/ESR (CLE) gene family member MtCLE02 |
           HC | chr6:2758541-2756924 | 20130731
          Length = 68

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 59/68 (86%), Gaps = 2/68 (2%)

Query: 54  VNSKTKRTVLVP--INVISKHLKLVGMQRHALHSNSGMIFVSKRRVPNGPDPIHNRKAVK 111
           +N +TKRT+LVP  +NV+S+ LKLV MQRHALHS+S ++ VSKRRVPNGPDPIHNR+A K
Sbjct: 1   MNHQTKRTILVPMNVNVLSRQLKLVSMQRHALHSDSRLVIVSKRRVPNGPDPIHNRRARK 60

Query: 112 YRQPPTQA 119
           YRQPP QA
Sbjct: 61  YRQPPNQA 68