Miyakogusa Predicted Gene

Lj2g3v1022540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1022540.1 tr|Q9LSJ1|Q9LSJ1_ARATH At3g28420 OS=Arabidopsis
thaliana GN=At3g28420 PE=2 SV=1,36.26,0.00000000001,seg,NULL;
DUF761,Protein of unknown function DUF761, plant,CUFF.35979.1
         (176 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g009320.1 | transmembrane protein, putative | HC | chr6:27...   170   6e-43

>Medtr6g009320.1 | transmembrane protein, putative | HC |
           chr6:2724402-2723564 | 20130731
          Length = 192

 Score =  170 bits (431), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 105/174 (60%), Gaps = 11/174 (6%)

Query: 14  EDCIHTILFTAGTFLLMVYLKSFLVEQWRAWVFLILNVILLAILFMSMRPVSWXXXXXXX 73
           ED I TI+FT GTFLLMV LKSFLVE+WRA+VFLILNVILLAILFMSM+P  W       
Sbjct: 19  EDSIQTIMFTLGTFLLMVCLKSFLVEKWRAYVFLILNVILLAILFMSMKPNYWKSRNLES 78

Query: 74  XXXXXXXXXXXXXXXPCVCSSQEIEEGKECHKD-----------VHVLQSXXXXXXXXXX 122
                              SSQEIEE KEC+K             HV             
Sbjct: 79  ESNVEEVKNDDKLKKSACESSQEIEENKECYKQHCWISTNISSTNHVHVENEIDEEEEEE 138

Query: 123 XXQVPMLSKEELNARVEAFIAMFRQHLISDVKQAEDFRLNKPANLTPKIEVPCC 176
              V +LSKEELN RVEAFIAMFR+HLISDVKQ EDFR  K +NLTPKIEV CC
Sbjct: 139 DEHVEVLSKEELNERVEAFIAMFRKHLISDVKQGEDFRHQKTSNLTPKIEVSCC 192