Miyakogusa Predicted Gene

Lj2g3v1022340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1022340.1 tr|G7JNT4|G7JNT4_MEDTR Aldehyde dehydrogenase
OS=Medicago truncatula GN=MTR_4g106620 PE=4 SV=1,68.25,2e-18,SUBFAMILY
NOT NAMED,NULL; CCR4-NOT TRANSCRIPTION COMPLEX RELATED,NULL;
ZF_RING_2,Zinc finger, RING-t,CUFF.35969.1
         (322 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g008950.1 | anti-virus transcriptional factor, putative | ...   390   e-109
Medtr4g107090.1 | hypothetical protein | HC | chr4:44228925-4422...    60   3e-09
Medtr4g107090.3 | hypothetical protein | HC | chr4:44228937-4422...    60   3e-09
Medtr4g107090.4 | hypothetical protein | HC | chr4:44228937-4422...    60   3e-09
Medtr4g107090.2 | hypothetical protein | HC | chr4:44228937-4422...    60   3e-09
Medtr2g093100.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    58   1e-08
Medtr2g093100.3 | RNA-binding (RRM/RBD/RNP motif) family protein...    58   1e-08
Medtr2g093100.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    58   1e-08
Medtr1g066970.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    58   1e-08
Medtr4g061180.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    57   2e-08
Medtr4g061180.3 | RNA-binding (RRM/RBD/RNP motif) family protein...    57   2e-08
Medtr4g061180.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    57   2e-08

>Medtr6g008950.1 | anti-virus transcriptional factor, putative | HC
           | chr6:2516081-2513329 | 20130731
          Length = 313

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 228/322 (70%), Gaps = 11/322 (3%)

Query: 1   MASGFISDPPLS-KKKRTNGSAKLKQIKLDVRREQWLSRVKKGCNVDSNGRMDNCPSSKH 59
           MA G ISDPP S KKKRTNGSAKLKQIKLDVRREQWLSRVKKGC+VDS GR+D+ PS+KH
Sbjct: 1   MAPGSISDPPFSSKKKRTNGSAKLKQIKLDVRREQWLSRVKKGCDVDSTGRVDSYPSAKH 60

Query: 60  TASEENRSSCKEMTRKGEDIEGTCIQDSDSRSTINSPDRSTYSHXXXXXXXXXXXXXXXX 119
            ASEEN+ S KE+ RKG + +GTCIQ +DS S IN+  +S+Y+H                
Sbjct: 61  IASEENQPSYKEIRRKGRE-DGTCIQGNDSGSIINNSIQSSYNHDESRNGFNGSRSSSTS 119

Query: 120 XXXXXXXXXXXXXXXGCLDDWEAVADALYANDKSHSVVSESPAEHEAECRYTVLEDDKNP 179
                          GCLDDWEAVADAL AN   HS+VSESP EH          D +  
Sbjct: 120 AFSSGNLTEED----GCLDDWEAVADALNANSNEHSMVSESPIEHTIN-----YVDSEAA 170

Query: 180 RVDFSKADFKSEVPESKPNRRAWKPDDTLRPRCLPNLSKQRNSPLNSNWRGSRKTVPWAW 239
           + DFSK +F S V ES  + RAWKPDD LRPRCLP+LSK  NS LNSNW GS K VPW+W
Sbjct: 171 KKDFSKKEFSSAVSESHMSCRAWKPDDALRPRCLPDLSKPHNSQLNSNWHGSHKIVPWSW 230

Query: 240 QTIISQPSQCPICYEDLDVTDSSFLPCSCGFHLCLFCHKKILEADARCPSCRKLYDHVDG 299
           +TI+SQPSQCPICYEDLDVTDS FLPCSCGFHLCLFCHKKI+EAD RCP CRKLYDHVDG
Sbjct: 231 RTIVSQPSQCPICYEDLDVTDSEFLPCSCGFHLCLFCHKKIVEADGRCPGCRKLYDHVDG 290

Query: 300 NVGLNIGAKAFCITQSCRTGTG 321
            VG NI    F +TQSC   TG
Sbjct: 291 TVGFNIETNDFYMTQSCHMSTG 312


>Medtr4g107090.1 | hypothetical protein | HC |
           chr4:44228925-44225359 | 20130731
          Length = 251

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 135 GCLDDWEAVADALYANDKSHSVVSESP-AEHEAECRYTVLEDDKNPRVDFSKADFKSEVP 193
           GCLDDWEAVADAL A++K  +   + P  E ++ C  T   D  +     SK      VP
Sbjct: 168 GCLDDWEAVADALAADEKHRASPQDEPVVETDSSCEVT---DGLSSGCLDSKPGSGGTVP 224

Query: 194 ESKPNRRAWKPDDTLRPRCLPNL 216
            +  N +AW+ DD  RP+ LPNL
Sbjct: 225 RASGNGKAWRADDAFRPQTLPNL 247



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 12 SKKKRTNGSAKLKQIKLDVRREQWLSRV---KKGC--NVDSNGRMDNCPSSKHTASEENR 66
           KKKRTN SAKLKQ K+D RREQWLS+    KKGC   +D +  + + P  K +  E  +
Sbjct: 21 GKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVSSSPVGKQSKREMEK 80

Query: 67 SSCKEMTRKGEDIEGTCIQDSD 88
             +   R+G + +    QDSD
Sbjct: 81 VGTR---RRGGEDDVLIHQDSD 99


>Medtr4g107090.3 | hypothetical protein | HC |
           chr4:44228937-44225278 | 20130731
          Length = 251

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 135 GCLDDWEAVADALYANDKSHSVVSESP-AEHEAECRYTVLEDDKNPRVDFSKADFKSEVP 193
           GCLDDWEAVADAL A++K  +   + P  E ++ C  T   D  +     SK      VP
Sbjct: 168 GCLDDWEAVADALAADEKHRASPQDEPVVETDSSCEVT---DGLSSGCLDSKPGSGGTVP 224

Query: 194 ESKPNRRAWKPDDTLRPRCLPNL 216
            +  N +AW+ DD  RP+ LPNL
Sbjct: 225 RASGNGKAWRADDAFRPQTLPNL 247



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 12 SKKKRTNGSAKLKQIKLDVRREQWLSRV---KKGC--NVDSNGRMDNCPSSKHTASEENR 66
           KKKRTN SAKLKQ K+D RREQWLS+    KKGC   +D +  + + P  K +  E  +
Sbjct: 21 GKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVSSSPVGKQSKREMEK 80

Query: 67 SSCKEMTRKGEDIEGTCIQDSD 88
             +   R+G + +    QDSD
Sbjct: 81 VGTR---RRGGEDDVLIHQDSD 99


>Medtr4g107090.4 | hypothetical protein | HC |
           chr4:44228937-44225278 | 20130731
          Length = 251

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 135 GCLDDWEAVADALYANDKSHSVVSESP-AEHEAECRYTVLEDDKNPRVDFSKADFKSEVP 193
           GCLDDWEAVADAL A++K  +   + P  E ++ C  T   D  +     SK      VP
Sbjct: 168 GCLDDWEAVADALAADEKHRASPQDEPVVETDSSCEVT---DGLSSGCLDSKPGSGGTVP 224

Query: 194 ESKPNRRAWKPDDTLRPRCLPNL 216
            +  N +AW+ DD  RP+ LPNL
Sbjct: 225 RASGNGKAWRADDAFRPQTLPNL 247



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 12 SKKKRTNGSAKLKQIKLDVRREQWLSRV---KKGC--NVDSNGRMDNCPSSKHTASEENR 66
           KKKRTN SAKLKQ K+D RREQWLS+    KKGC   +D +  + + P  K +  E  +
Sbjct: 21 GKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVSSSPVGKQSKREMEK 80

Query: 67 SSCKEMTRKGEDIEGTCIQDSD 88
             +   R+G + +    QDSD
Sbjct: 81 VGTR---RRGGEDDVLIHQDSD 99


>Medtr4g107090.2 | hypothetical protein | HC |
           chr4:44228937-44225278 | 20130731
          Length = 251

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 135 GCLDDWEAVADALYANDKSHSVVSESP-AEHEAECRYTVLEDDKNPRVDFSKADFKSEVP 193
           GCLDDWEAVADAL A++K  +   + P  E ++ C  T   D  +     SK      VP
Sbjct: 168 GCLDDWEAVADALAADEKHRASPQDEPVVETDSSCEVT---DGLSSGCLDSKPGSGGTVP 224

Query: 194 ESKPNRRAWKPDDTLRPRCLPNL 216
            +  N +AW+ DD  RP+ LPNL
Sbjct: 225 RASGNGKAWRADDAFRPQTLPNL 247



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 12 SKKKRTNGSAKLKQIKLDVRREQWLSRV---KKGC--NVDSNGRMDNCPSSKHTASEENR 66
           KKKRTN SAKLKQ K+D RREQWLS+    KKGC   +D +  + + P  K +  E  +
Sbjct: 21 GKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVSSSPVGKQSKREMEK 80

Query: 67 SSCKEMTRKGEDIEGTCIQDSD 88
             +   R+G + +    QDSD
Sbjct: 81 VGTR---RRGGEDDVLIHQDSD 99


>Medtr2g093100.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
           CP+C E++D+TD    PC CG+ +C++C   I+      E + RCP+CR  YD
Sbjct: 9   CPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPYD 61


>Medtr2g093100.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
           CP+C E++D+TD    PC CG+ +C++C   I+      E + RCP+CR  YD
Sbjct: 9   CPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPYD 61


>Medtr2g093100.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
           CP+C E++D+TD    PC CG+ +C++C   I+      E + RCP+CR  YD
Sbjct: 9   CPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPYD 61


>Medtr1g066970.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
           putative | HC | chr1:28798997-28807271 | 20130731
          Length = 908

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
           CPIC E++D+TD    PC CG+ +C++C   I+      E + RCP+CR  YD
Sbjct: 9   CPICTEEMDLTDQHLKPCKCGYEICVWCWHHIMEMAHKDETEGRCPACRSPYD 61


>Medtr4g061180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596011-22605283 | 20130731
          Length = 1042

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
           CP+C E++D+TD    PC CG+ +C++C   I+      + D RCP+CR  YD
Sbjct: 9   CPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYD 61


>Medtr4g061180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596005-22605283 | 20130731
          Length = 1042

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
           CP+C E++D+TD    PC CG+ +C++C   I+      + D RCP+CR  YD
Sbjct: 9   CPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYD 61


>Medtr4g061180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596008-22605283 | 20130731
          Length = 1042

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 249 CPICYEDLDVTDSSFLPCSCGFHLCLFCHKKIL------EADARCPSCRKLYD 295
           CP+C E++D+TD    PC CG+ +C++C   I+      + D RCP+CR  YD
Sbjct: 9   CPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYD 61