Miyakogusa Predicted Gene
- Lj2g3v1021080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1021080.1 Non Characterized Hit- tr|I1N5X8|I1N5X8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,60,0.0000000002,YhbY-like,RNA-binding, CRM domain;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.35953.1
(467 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | H... 513 e-145
Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 305 6e-83
Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 305 6e-83
Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:524... 276 3e-74
Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC | chr6:315... 275 6e-74
Medtr2g100660.1 | group IIA intron splicing facilitator CRS1 | H... 258 1e-68
Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC ... 241 9e-64
Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC ... 129 7e-30
Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC ... 126 5e-29
Medtr4g067300.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:254... 102 8e-22
Medtr1g050760.5 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 98 2e-20
Medtr1g050760.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 98 2e-20
Medtr1g050760.3 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 98 2e-20
Medtr1g050760.2 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 98 2e-20
Medtr1g050760.4 | CRS1/YhbY (CRM) domain protein | HC | chr1:196... 98 2e-20
Medtr4g120880.2 | CRS1/YhbY domain protein | HC | chr4:50063811-... 91 3e-18
Medtr4g120880.1 | CRS1/YhbY domain protein | HC | chr4:50064035-... 91 3e-18
Medtr4g120880.3 | CRS1/YhbY domain protein | HC | chr4:50063978-... 86 1e-16
Medtr6g004480.1 | CRS1/YhbY (CRM) domain protein | HC | chr6:294... 80 5e-15
Medtr8g102850.1 | CRS2-associated factor 1 | HC | chr8:43308642-... 59 2e-08
Medtr8g102850.2 | CRS2-associated factor 1 | HC | chr8:43308642-... 58 2e-08
Medtr8g066010.1 | group IIA intron splicing facilitator CRS1 | H... 57 3e-08
>Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | HC |
chr6:2256928-2245549 | 20130731
Length = 1045
Score = 513 bits (1320), Expect = e-145, Method: Compositional matrix adjust.
Identities = 283/481 (58%), Positives = 330/481 (68%), Gaps = 39/481 (8%)
Query: 1 MTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEI 60
MTTL+RL R +P HFALGRN KLQG+AAAIIK WERCEIV IAVKRGVQNT++ MAEEI
Sbjct: 374 MTTLKRLGRTLPCHFALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRKMAEEI 433
Query: 61 KHLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRRNIGLYKLKAENSLSVVPAD-SEG 119
K+LTGG LL+R++E IV YRGKDFLPAAVSSAI++R K AEN ++ + SE
Sbjct: 434 KYLTGGTLLSRNKEVIVIYRGKDFLPAAVSSAIKKRWKAVKNKENAENRSAITASSHSER 493
Query: 120 NGVTFQKDTEIFKKELLTKAKEANKFKKSSIXXXXXXXXXXXXXXXXXXXXXXXSPQEQE 179
+TF KD E +K LL KAK A +++S S QE+E
Sbjct: 494 KHMTFIKDKETIEKPLLMKAKAA--IQRTSFKLAQALEKKEKAEKLLESLEKDESLQEEE 551
Query: 180 IDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGSLE 239
IDKE ITEEERYMLR+IGLKM+PFLLLGRRGVFDGTVENMHLHWKYRELVK+IC + S+E
Sbjct: 552 IDKESITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQESVE 611
Query: 240 AVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKKLAMKRSIE 299
+Q A+TLEAESGGILVAVERV+KGYAIIVYRGKNYSRP SLRP+TLLNKK A+KRSIE
Sbjct: 612 YAHQTARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPDSLRPRTLLNKKQALKRSIE 671
Query: 300 AQRYESLKLHVLNLDKNINELKLQMVKDEANSKQMPETLRSDLVTDK--HGASTNS---- 353
AQR E+LKLHVL LDKNINELK QMVKDEA+S+Q+ + LRSDL T+ AS ++
Sbjct: 672 AQRREALKLHVLKLDKNINELKHQMVKDEASSEQIAKELRSDLATENSPEEASVDNQQPI 731
Query: 354 ------------------------------TSCNSPKEASFENQQAIQEQQVELIDGGGA 383
+ NS +EAS +NQQ IQEQ +ELID G
Sbjct: 732 QEQHIELIGSGGECQGEPESLTGLVHQERQATKNSLEEASVDNQQPIQEQHIELIDTGEE 791
Query: 384 RPGELDSWAGSIHKETQPDVVSDSVVDAGHCASNEKDMESSIASSKSDPEPPASIISRRS 443
GE +S G +H+E Q D V D VVD GH S K E SI S KSDPEP A +I+ S
Sbjct: 792 CQGEPESLTGLVHQERQLDEVDDFVVDTGHSVSTNKASEGSIISFKSDPEPSAPVINENS 851
Query: 444 N 444
N
Sbjct: 852 N 852
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 185 ITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGSLEAVYQV 244
+T+ E LR++G +M+ + +G+ GV +G V +H W+ E+V+V+C++ + +
Sbjct: 151 LTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRT 210
Query: 245 AQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTL 287
LE ++GG++V G II+YRG +Y P L + L
Sbjct: 211 HDILERKTGGLVVW----RSGSKIILYRGIDYKYPYFLSDEVL 249
>Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33263693-33269751 | 20130731
Length = 838
Score = 305 bits (781), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 164/358 (45%), Positives = 231/358 (64%), Gaps = 29/358 (8%)
Query: 2 TTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEIK 61
T+LRR++R +P HFALGRNR+LQGLAAA+IKLWE+ I K+A+KRGVQ T SE MAEEIK
Sbjct: 423 TSLRRIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIK 482
Query: 62 HLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRRNIG--------LYKLKAEN----- 108
LTGG +L+R+++F+VFYRGK+FL V+ A+ +R + +L+A +
Sbjct: 483 KLTGGIILSRNKDFLVFYRGKNFLSPDVTQALLEREKMAKSMQDEEEQARLRASSLILPA 542
Query: 109 -SLSVVPADSEGNGVTFQKDT-------EIFKKELLTKAKE---ANKFKKSSIXXXXXXX 157
+ S + A++ G T D E +++++ + ++ AN +K
Sbjct: 543 INTSELSAEAGTLGETLDADAKWGKTLDECHEQKVMREVEQLRHANIVRKLEEKLSLAER 602
Query: 158 XXXXXXXXXXXXXXXXSPQEQEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVE 217
P E D E IT+EER+M RK+GL+M+ FLLLGRRGVFDGT+E
Sbjct: 603 KIRRAERALMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIE 662
Query: 218 NMHLHWKYRELVKVICKEGSLEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYS 277
NMHLHWKYRELVK+I K + E V ++A LEAESGG+LV+V++VSKGY+I+VYRGK+Y
Sbjct: 663 NMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQ 722
Query: 278 RPASLRPQTLLNKKLAMKRSIEAQRYESLKLHVLNLDKNINELK-----LQMVKDEAN 330
RP+ LRP+ LL K+ A+ RSIE QR+E+L H+ L + +L+ ++ VK+E +
Sbjct: 723 RPSMLRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEIEQIEKVKEEGD 780
>Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33243553-33249532 | 20130731
Length = 838
Score = 305 bits (781), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 164/358 (45%), Positives = 231/358 (64%), Gaps = 29/358 (8%)
Query: 2 TTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEIK 61
T+LRR++R +P HFALGRNR+LQGLAAA+IKLWE+ I K+A+KRGVQ T SE MAEEIK
Sbjct: 423 TSLRRIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIK 482
Query: 62 HLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRRNIG--------LYKLKAEN----- 108
LTGG +L+R+++F+VFYRGK+FL V+ A+ +R + +L+A +
Sbjct: 483 KLTGGIILSRNKDFLVFYRGKNFLSPDVTQALLEREKMAKSMQDEEEQARLRASSLILPA 542
Query: 109 -SLSVVPADSEGNGVTFQKDT-------EIFKKELLTKAKE---ANKFKKSSIXXXXXXX 157
+ S + A++ G T D E +++++ + ++ AN +K
Sbjct: 543 INTSELSAEAGTLGETLDADAKWGKTLDECHEQKVMREVEQLRHANIVRKLEEKLSLAER 602
Query: 158 XXXXXXXXXXXXXXXXSPQEQEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVE 217
P E D E IT+EER+M RK+GL+M+ FLLLGRRGVFDGT+E
Sbjct: 603 KIRRAERALMKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIE 662
Query: 218 NMHLHWKYRELVKVICKEGSLEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYS 277
NMHLHWKYRELVK+I K + E V ++A LEAESGG+LV+V++VSKGY+I+VYRGK+Y
Sbjct: 663 NMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQ 722
Query: 278 RPASLRPQTLLNKKLAMKRSIEAQRYESLKLHVLNLDKNINELK-----LQMVKDEAN 330
RP+ LRP+ LL K+ A+ RSIE QR+E+L H+ L + +L+ ++ VK+E +
Sbjct: 723 RPSMLRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSEIEQIEKVKEEGD 780
>Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC |
chr4:52429589-52424702 | 20130731
Length = 744
Score = 276 bits (706), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/356 (42%), Positives = 218/356 (61%), Gaps = 25/356 (7%)
Query: 1 MTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEI 60
MT +RR+SR HFALGRNR+LQGLA AI+KLWE I KIA+KRGV T+++ MAEE+
Sbjct: 382 MTDMRRVSRRTAPHFALGRNRELQGLARAIVKLWETSAIAKIAIKRGVPYTSNDRMAEEL 441
Query: 61 KHLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRRNIGLYKL----KAENSLSVVPAD 116
K LTGG LL+R++E+IV YRG DFLP V+ + +R+ + + + KA + S++
Sbjct: 442 KKLTGGTLLSRNKEYIVIYRGNDFLPPVVTKTLTERQKLTVLQQDEEEKARQNASLITLS 501
Query: 117 --------------SEGNGVTFQKDTEIFKKELLTKAKEANKFKKSSIXXXXXXXXXXXX 162
+E T + K+E+ +E+ + SS+
Sbjct: 502 NRKSSQMQLLAGTLAETRAATANWGHQPSKQEVGKMIRESTLDRLSSLIRNHESKLALAK 561
Query: 163 XXXXXXXXXXX------SPQEQEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTV 216
P + ID E +T EER + RK+GL M+P+LLLGRR V+ GT+
Sbjct: 562 TRFRKSEKDLAKIQGDFDPADLPIDLETLTNEERSLFRKMGLSMKPYLLLGRRDVYAGTI 621
Query: 217 ENMHLHWKYRELVKVICKEGSLEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNY 276
ENMHLHWKYRELVK++ K +L V +A +LEAESGG+LV+V++ +KG+ II+YRGKNY
Sbjct: 622 ENMHLHWKYRELVKILVKGKNLAQVKHIAISLEAESGGVLVSVDKDTKGHIIIIYRGKNY 681
Query: 277 SRPASLRPQTLLNKKLAMKRSIEAQRYESLKLHVLNLDKNINELKLQMVKDEANSK 332
RP +RP++LL+++ A+ RSIE QR E+LK H+ +L + I LK ++ +D N K
Sbjct: 682 FRPQVMRPKSLLSRRQALARSIELQRREALKHHISDLQEMIELLKSEL-EDMKNQK 736
>Medtr6g084410.1 | CRS1/YhbY (CRM) domain protein | HC |
chr6:31586826-31594407 | 20130731
Length = 820
Score = 275 bits (704), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 213/359 (59%), Gaps = 28/359 (7%)
Query: 1 MTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEI 60
MT LR++++ +P HFALGRNR QGLA AI+KLWER I KIAVK G+QNTN+++MA+E+
Sbjct: 415 MTDLRKIAKSLPCHFALGRNRNHQGLACAILKLWERSLIAKIAVKPGIQNTNNKLMADEL 474
Query: 61 KHLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRRNIGLYKLKAENSL---------- 110
LTGG LL R+R +IV YRGKDF+P V++ + +R+ + E +
Sbjct: 475 STLTGGTLLLRNRFYIVIYRGKDFVPTGVAAVLAERQELTKQVQDVEEKVRCKAVVATPS 534
Query: 111 ----SVVPADS----------EGNGVTFQKDTEIFKKELLTKAKEANKFKKSSIXXXXXX 156
+ PA S G V+ ++ + K+ TKAK K+
Sbjct: 535 VQGEATAPAGSLAEFYEAQARWGRDVSSEEHERMIKEA--TKAKNVKLVKQIEHKISLAA 592
Query: 157 XXXXXXXXXXXXXXXXXSPQEQEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTV 216
P + D+E IT+EER + R+IGL+M+ +L LG RGVFDG +
Sbjct: 593 NKLHRAERLLAKIESSMVPVGPDYDQETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVI 652
Query: 217 ENMHLHWKYRELVKVICKEGSLEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNY 276
ENMHLHWK+RELVK++ K+ + V A+ LE ESGGILVA+E+VSK +AII YRGKNY
Sbjct: 653 ENMHLHWKHRELVKLVTKQKNRAFVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNY 712
Query: 277 SRPASLRPQTLLNKKLAMKRSIEAQRYESLKLHVLNLDKNINELK--LQMVKDEANSKQ 333
RP +LRP+ LL K A+KRS+ R+E+L H+ L+ I ++K L + DE + K+
Sbjct: 713 KRPLTLRPRNLLTKAKALKRSVAMLRHEALSNHITELETTIEQMKQELGLSDDELSMKE 771
>Medtr2g100660.1 | group IIA intron splicing facilitator CRS1 | HC |
chr2:43276481-43269840 | 20130731
Length = 794
Score = 258 bits (658), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/351 (41%), Positives = 205/351 (58%), Gaps = 28/351 (7%)
Query: 1 MTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEI 60
+T RR+S P+P+HF LGRNR LQGLAAAI+KLW + I KIA+K GVQNT++E MA E+
Sbjct: 387 LTYFRRISHPLPTHFVLGRNRGLQGLAAAILKLWHKSHIAKIAIKYGVQNTDNETMANEL 446
Query: 61 KHLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRRNIGL---------YKLKAENSLS 111
K LTGG LL R++ +I+ YRGKDFLP V+ +E RR + L ++KA + S
Sbjct: 447 KRLTGGVLLLRNKFYILLYRGKDFLPRRVADLVE-RRELELKSCQLDEEVARMKAIQAFS 505
Query: 112 VVPADSEGNGVTFQKDTEIFK--KELLTKAKEAN----------------KFKKSSIXXX 153
+ G + F+ + L + KE N + K+
Sbjct: 506 SIDEFPLPQGTSTSGTLTEFRNIQNKLDEMKEVNVDLSIPLEAEIYRLEKELKEQQRKAF 565
Query: 154 XXXXXXXXXXXXXXXXXXXXSPQEQEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFD 213
P ++ID E +T+EER RK+GLKM+ L+LGRRGVFD
Sbjct: 566 ILNKKIERSTMELSKLNAAWKPSGEDIDLEIMTDEERECFRKMGLKMRSCLVLGRRGVFD 625
Query: 214 GTVENMHLHWKYRELVKVICKEGSLEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRG 273
G +E +H HWK+RE+ KVI + + V +Q LE ESGGILV+V+++ +GYAII+YRG
Sbjct: 626 GVLEGLHQHWKHREVAKVITMQRLISRVIYTSQFLERESGGILVSVDQLKEGYAIIIYRG 685
Query: 274 KNYSRPASLRPQTLLNKKLAMKRSIEAQRYESLKLHVLNLDKNINELKLQM 324
KNYSRP+ + LL K+ A++RS+E QR SLK +K I++LKL++
Sbjct: 686 KNYSRPSEKIAKNLLTKRKALRRSLEMQRIGSLKFFAHQREKTISDLKLKL 736
>Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 634
Score = 241 bits (616), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 193/318 (60%), Gaps = 14/318 (4%)
Query: 2 TTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEIK 61
T + +L++ +P HFALGRNR LQGLA AI+KLWE+ + KIAVK GVQNTN+E+MA E+K
Sbjct: 286 TKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNELMALELK 345
Query: 62 HLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRR-NIGL--YKLKAENSLSVVPAD-S 117
LTGG LL R++ +I+ YRGKDF+P +V++ + +R+ N+ + E+ S +
Sbjct: 346 KLTGGTLLLRNKYYILIYRGKDFIPTSVAAILSERQENVQCRAVDVSGEDETSAQAGSMA 405
Query: 118 EGNGVTFQKDTEIFKKE---LLTKAKEANKFK-------KSSIXXXXXXXXXXXXXXXXX 167
E N EI +E ++ +A EA + K ++
Sbjct: 406 EFNEAQALCGREISTEECEKMMKEAAEATNVRLMKKIERKPAVIHEHTDTKKSRAEKLLA 465
Query: 168 XXXXXXSPQEQEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRE 227
P + +E IT+EER M R +GL+++ +L L GVFD +ENMHLHW+ RE
Sbjct: 466 KIDSSMVPVGPDNRRETITDEERVMFRVVGLRLKVYLQLDTLGVFDSVIENMHLHWRQRE 525
Query: 228 LVKVICKEGSLEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTL 287
LVK+I K+ SL V + A LE +SGGILVA++R+ KG+++I YRGK+Y RP +LR + L
Sbjct: 526 LVKLITKQKSLAFVEETASLLEYKSGGILVAIDRLPKGFSLIYYRGKDYKRPITLRHRNL 585
Query: 288 LNKKLAMKRSIEAQRYES 305
L K A++ SI QR+ES
Sbjct: 586 LTKTKALQHSISMQRHES 603
>Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 523
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 128/236 (54%), Gaps = 18/236 (7%)
Query: 2 TTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEIK 61
T + +L++ +P HFALGRNR LQGLA AI+KLWE+ + KIAVK GVQNTN+E+MA E+K
Sbjct: 286 TKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNELMALELK 345
Query: 62 HLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRR-NIGL--YKLKAENSLSVVPAD-S 117
LTGG LL R++ +I+ YRGKDF+P +V++ + +R+ N+ + E+ S +
Sbjct: 346 KLTGGTLLLRNKYYILIYRGKDFIPTSVAAILSERQENVQCRAVDVSGEDETSAQAGSMA 405
Query: 118 EGNGVTFQKDTEIFKKE---LLTKAKEANKF-------KKSSIXXXXXXXXXXXXXXXXX 167
E N EI +E ++ +A EA +K ++
Sbjct: 406 EFNEAQALCGREISTEECEKMMKEAAEATNVRLMKKIERKPAVIHEHTDTKKSRAEKLLA 465
Query: 168 XXXXXXSPQEQEIDKEGITEEERYMLRKIGLKMQ---PFLLLGRR-GVFDGTVENM 219
P + +E IT+EER M R +GL+++ FL++ R + G EN+
Sbjct: 466 KIDSSMVPVGPDNRRETITDEERVMFRVVGLRLKIHLVFLIVSLRICICTGGSENL 521
>Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43952280 | 20130731
Length = 463
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 77/96 (80%)
Query: 2 TTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEIK 61
T + +L++ +P HFALGRNR LQGLA AI+KLWE+ + KIAVK GVQNTN+E+MA E+K
Sbjct: 286 TKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNELMALELK 345
Query: 62 HLTGGNLLARDREFIVFYRGKDFLPAAVSSAIEQRR 97
LTGG LL R++ +I+ YRGKDF+P +V++ + +R+
Sbjct: 346 KLTGGTLLLRNKYYILIYRGKDFIPTSVAAILSERQ 381
>Medtr4g067300.1 | CRS1/YhbY (CRM) domain protein | HC |
chr4:25400463-25403698 | 20130731
Length = 428
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 176 QEQEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKE 235
Q E+ +G+T EER+ L+K+ K +L +GRRG+F G + NMH+HWK E VK ICK
Sbjct: 164 QGPEVKPDGLTGEERHYLKKMAQKSSNYLQVGRRGLFGGVILNMHMHWKKHETVKCICKP 223
Query: 236 GSLEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKKLAMK 295
V++ AQ L SGGI + + II YRGKNY +P + P L+KK A++
Sbjct: 224 CKPGQVHEYAQELARLSGGIPI---HIIGDDTIIFYRGKNYMQPEVMSPIDTLSKKKALE 280
Query: 296 RSIEAQRYESLK 307
+S Q ES++
Sbjct: 281 KSKYEQSLESVR 292
>Medtr1g050760.5 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656869-19653698 | 20130731
Length = 443
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 25/244 (10%)
Query: 181 DKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGSLEA 240
D E +T EE + K+GLK + ++ +GRRG++ G + NMHLHWK + ++V+ K S E
Sbjct: 154 DPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEE 213
Query: 241 VYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPAS--LRPQTLLNKKLAMKRSI 298
V ++A L +GGI++ + II+YRGKNYS+P + + P+ L +K A+ +S
Sbjct: 214 VKEIATELARLTGGIVLGIHEED---TIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSK 270
Query: 299 EAQRYESLKLHVLNLDKNINELKLQMVKDEANSKQMPETLRSDLVTDKHGASTNSTSCNS 358
+++ ++ L++ + L+ Q ++ + E ++ ++DK +S S
Sbjct: 271 YRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQ---ISDKVSVEPSSVS--- 324
Query: 359 PKEASFENQQAIQEQQVELIDGGGARPGELDSWA-GSIHKETQPDVVSDSVVDAGHCASN 417
Q+E +D GA + +S + H ++ D SD + D S+
Sbjct: 325 -------------NLQLEKLDKVGAMFNDNNSCSEDEAHMDSDLDSYSDKLSDIFETDSD 371
Query: 418 EKDM 421
+D+
Sbjct: 372 TEDL 375
>Medtr1g050760.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656869-19653698 | 20130731
Length = 443
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 25/244 (10%)
Query: 181 DKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGSLEA 240
D E +T EE + K+GLK + ++ +GRRG++ G + NMHLHWK + ++V+ K S E
Sbjct: 154 DPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEE 213
Query: 241 VYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPAS--LRPQTLLNKKLAMKRSI 298
V ++A L +GGI++ + II+YRGKNYS+P + + P+ L +K A+ +S
Sbjct: 214 VKEIATELARLTGGIVLGIHEED---TIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSK 270
Query: 299 EAQRYESLKLHVLNLDKNINELKLQMVKDEANSKQMPETLRSDLVTDKHGASTNSTSCNS 358
+++ ++ L++ + L+ Q ++ + E ++ ++DK +S S
Sbjct: 271 YRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQ---ISDKVSVEPSSVS--- 324
Query: 359 PKEASFENQQAIQEQQVELIDGGGARPGELDSWA-GSIHKETQPDVVSDSVVDAGHCASN 417
Q+E +D GA + +S + H ++ D SD + D S+
Sbjct: 325 -------------NLQLEKLDKVGAMFNDNNSCSEDEAHMDSDLDSYSDKLSDIFETDSD 371
Query: 418 EKDM 421
+D+
Sbjct: 372 TEDL 375
>Medtr1g050760.3 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656869-19653698 | 20130731
Length = 443
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 25/244 (10%)
Query: 181 DKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGSLEA 240
D E +T EE + K+GLK + ++ +GRRG++ G + NMHLHWK + ++V+ K S E
Sbjct: 154 DPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEE 213
Query: 241 VYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPAS--LRPQTLLNKKLAMKRSI 298
V ++A L +GGI++ + II+YRGKNYS+P + + P+ L +K A+ +S
Sbjct: 214 VKEIATELARLTGGIVLGIHEED---TIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSK 270
Query: 299 EAQRYESLKLHVLNLDKNINELKLQMVKDEANSKQMPETLRSDLVTDKHGASTNSTSCNS 358
+++ ++ L++ + L+ Q ++ + E ++ ++DK +S S
Sbjct: 271 YRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQ---ISDKVSVEPSSVS--- 324
Query: 359 PKEASFENQQAIQEQQVELIDGGGARPGELDSWA-GSIHKETQPDVVSDSVVDAGHCASN 417
Q+E +D GA + +S + H ++ D SD + D S+
Sbjct: 325 -------------NLQLEKLDKVGAMFNDNNSCSEDEAHMDSDLDSYSDKLSDIFETDSD 371
Query: 418 EKDM 421
+D+
Sbjct: 372 TEDL 375
>Medtr1g050760.2 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656435-19653698 | 20130731
Length = 328
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 25/244 (10%)
Query: 181 DKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGSLEA 240
D E +T EE + K+GLK + ++ +GRRG++ G + NMHLHWK + ++V+ K S E
Sbjct: 39 DPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEE 98
Query: 241 VYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPAS--LRPQTLLNKKLAMKRSI 298
V ++A L +GGI++ + II+YRGKNYS+P + + P+ L +K A+ +S
Sbjct: 99 VKEIATELARLTGGIVLGIHEED---TIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSK 155
Query: 299 EAQRYESLKLHVLNLDKNINELKLQMVKDEANSKQMPETLRSDLVTDKHGASTNSTSCNS 358
+++ ++ L++ + L+ Q ++ + E ++ ++DK +S S
Sbjct: 156 YRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQ---ISDKVSVEPSSVS--- 209
Query: 359 PKEASFENQQAIQEQQVELIDGGGARPGELDSWA-GSIHKETQPDVVSDSVVDAGHCASN 417
Q+E +D GA + +S + H ++ D SD + D S+
Sbjct: 210 -------------NLQLEKLDKVGAMFNDNNSCSEDEAHMDSDLDSYSDKLSDIFETDSD 256
Query: 418 EKDM 421
+D+
Sbjct: 257 TEDL 260
>Medtr1g050760.4 | CRS1/YhbY (CRM) domain protein | HC |
chr1:19656435-19653698 | 20130731
Length = 328
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 25/244 (10%)
Query: 181 DKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGSLEA 240
D E +T EE + K+GLK + ++ +GRRG++ G + NMHLHWK + ++V+ K S E
Sbjct: 39 DPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEE 98
Query: 241 VYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPAS--LRPQTLLNKKLAMKRSI 298
V ++A L +GGI++ + II+YRGKNYS+P + + P+ L +K A+ +S
Sbjct: 99 VKEIATELARLTGGIVLGIHEED---TIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSK 155
Query: 299 EAQRYESLKLHVLNLDKNINELKLQMVKDEANSKQMPETLRSDLVTDKHGASTNSTSCNS 358
+++ ++ L++ + L+ Q ++ + E ++ ++DK +S S
Sbjct: 156 YRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQ---ISDKVSVEPSSVS--- 209
Query: 359 PKEASFENQQAIQEQQVELIDGGGARPGELDSWA-GSIHKETQPDVVSDSVVDAGHCASN 417
Q+E +D GA + +S + H ++ D SD + D S+
Sbjct: 210 -------------NLQLEKLDKVGAMFNDNNSCSEDEAHMDSDLDSYSDKLSDIFETDSD 256
Query: 418 EKDM 421
+D+
Sbjct: 257 TEDL 260
>Medtr4g120880.2 | CRS1/YhbY domain protein | HC |
chr4:50063811-50059450 | 20130731
Length = 347
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 178 QEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGS 237
+ D E +TEEER+ L++ G K + ++ +GRRGVF G V NMHLHWK E VKVICK
Sbjct: 193 ETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCK 252
Query: 238 LEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKKLAMKRS 297
++ ++ L S GI V + II YRG NY +P + P L+K A+++
Sbjct: 253 PGQAHEYSEELSRLSKGI---VIDIKPNIIIIFYRGMNYVQPKVMSPPDTLSKAKALEKY 309
Query: 298 IEAQRYESLKLHVLNLDKNINELKLQMVK 326
Q E + L+K + E + K
Sbjct: 310 RYEQSLEHTSQFIERLEKELEEYHEHVAK 338
>Medtr4g120880.1 | CRS1/YhbY domain protein | HC |
chr4:50064035-50059450 | 20130731
Length = 347
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 178 QEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGS 237
+ D E +TEEER+ L++ G K + ++ +GRRGVF G V NMHLHWK E VKVICK
Sbjct: 193 ETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCK 252
Query: 238 LEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKKLAMKRS 297
++ ++ L S GI V + II YRG NY +P + P L+K A+++
Sbjct: 253 PGQAHEYSEELSRLSKGI---VIDIKPNIIIIFYRGMNYVQPKVMSPPDTLSKAKALEKY 309
Query: 298 IEAQRYESLKLHVLNLDKNINELKLQMVK 326
Q E + L+K + E + K
Sbjct: 310 RYEQSLEHTSQFIERLEKELEEYHEHVAK 338
>Medtr4g120880.3 | CRS1/YhbY domain protein | HC |
chr4:50063978-50060237 | 20130731
Length = 310
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 178 QEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGS 237
+ D E +TEEER+ L++ G K + ++ +GRRGVF G V NMHLHWK E VKVICK
Sbjct: 193 ETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCK 252
Query: 238 LEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNK 290
++ ++ L S GI V + II YRG NY +P + P L+K
Sbjct: 253 PGQAHEYSEELSRLSKGI---VIDIKPNIIIIFYRGMNYVQPKVMSPPDTLSK 302
>Medtr6g004480.1 | CRS1/YhbY (CRM) domain protein | HC |
chr6:294438-300203 | 20130731
Length = 631
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 181 DKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGSLEA 240
D E T E+ +KIG K + ++ +G RGVF G V+NMHLHWK+ E V+V C E
Sbjct: 148 DPELFTPEQLQAYKKIGFKNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKER 207
Query: 241 VYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKKLAMKRSIEA 300
+ ++A L SGGI++ V V II++RG+NY +P +L P L K+ A+ ++
Sbjct: 208 IKEMASMLARLSGGIVLNVHNVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 264
Query: 301 QRYESLKLHVLNLDKNINEL 320
Q ES KL++ +++++ +
Sbjct: 265 QALESQKLNIKKIEQDLRRM 284
>Medtr8g102850.1 | CRS2-associated factor 1 | HC |
chr8:43308642-43312417 | 20130731
Length = 698
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 178 QEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGS 237
+E+ E +T+EE L + LK L LGR G ++N+H HWK R + K+ C
Sbjct: 165 EEVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVC 224
Query: 238 LEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYS 277
+ V Q LE ++GG ++ +G I ++RG+NY+
Sbjct: 225 TVDMDNVCQQLEEKTGGKVI----YRRGGVIYLFRGRNYN 260
>Medtr8g102850.2 | CRS2-associated factor 1 | HC |
chr8:43308642-43312417 | 20130731
Length = 656
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 178 QEIDKEGITEEERYMLRKIGLKMQPFLLLGRRGVFDGTVENMHLHWKYRELVKVICKEGS 237
+E+ E +T+EE L + LK L LGR G ++N+H HWK R + K+ C
Sbjct: 165 EEVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVC 224
Query: 238 LEAVYQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYS 277
+ V Q LE ++GG ++ +G I ++RG+NY+
Sbjct: 225 TVDMDNVCQQLEEKTGGKVI----YRRGGVIYLFRGRNYN 260
>Medtr8g066010.1 | group IIA intron splicing facilitator CRS1 | HC |
chr8:27412601-27414644 | 20130731
Length = 373
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 7/61 (11%)
Query: 1 MTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTNSEIMAEEI 60
MT +RR++R HFALG LA AI+KLWE + KIA++ GV T+++ MAEE+
Sbjct: 185 MTVMRRIARRTALHFALG-------LARAIVKLWETSAVAKIAIRHGVPYTSNDRMAEEL 237
Query: 61 K 61
K
Sbjct: 238 K 238