Miyakogusa Predicted Gene

Lj2g3v1020050.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1020050.1 tr|Q4S7G7|Q4S7G7_TETNG DNA-directed RNA
polymerase (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG000,65.71,2e-19,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; no description,NULL; RNA_pol_Rpb2,CUFF.35947.1
         (82 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g023445.1 | DNA-directed RNA polymerase | LC | chr8:845866...   144   1e-35
Medtr8g023440.1 | RNA polymerase Rpb2 domain 3 protein | HC | ch...    71   3e-13
Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC ...    59   1e-09

>Medtr8g023445.1 | DNA-directed RNA polymerase | LC |
            chr8:8458667-8488921 | 20130731
          Length = 2002

 Score =  144 bits (364), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/81 (79%), Positives = 71/81 (87%)

Query: 1    MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHAPDSF 60
            MLC CDTPEGE+CGLVKNLALMTHVTT+EEE PLISLCY LGVE+ME LSGEELH P+SF
Sbjct: 1344 MLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLISLCYLLGVENMEHLSGEELHTPNSF 1403

Query: 61   LVIFYGLILGKHTEPQKFEAS 81
            LVIF G+ILGKH  PQ+F  +
Sbjct: 1404 LVIFNGMILGKHRRPQRFATA 1424


>Medtr8g023440.1 | RNA polymerase Rpb2 domain 3 protein | HC |
           chr8:8454247-8456089 | 20130731
          Length = 181

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 34/37 (91%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISL 37
           MLC CDTPEGE CGLVKNLALMTHVT +EEEAPLISL
Sbjct: 102 MLCPCDTPEGEYCGLVKNLALMTHVTADEEEAPLISL 138


>Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC |
           chr1:7523400-7533496 | 20130731
          Length = 1195

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHAPDSF 60
           M+C  +TPEG+ACGLVKNLALM ++T      P++      G E+ E +S   +  P + 
Sbjct: 515 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQAT 572

Query: 61  LVIFYGLILGKHTEP 75
            +   G  +G H +P
Sbjct: 573 KIFVNGCWMGIHRDP 587