Miyakogusa Predicted Gene

Lj2g3v1019870.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1019870.2 Non Characterized Hit- tr|I1J5K0|I1J5K0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,84.62,9e-18,GB
DEF: T7N9.12,NULL; REGULATOR OF CHROMOSOME CONDENSATION,NULL;
RCC1/BLIP-II,Regulator of chromosom,CUFF.35937.2
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g038220.1 | chromosome condensation regulator RCC1 repeat ...   105   8e-24

>Medtr5g038220.1 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr5:16715323-16711306 | 20130731
          Length = 386

 Score =  105 bits (263), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 53/58 (91%)

Query: 39  SENGEVKTWGWGEHGQLGLGDTCDRISPDTVSLGYDLNEAASIRVYYGSGFTFALTMP 96
           +ENGE+KTWGWGEHGQLGLGD  DRISP TV+LGYDLNEAASIRVY GSGFTFALT P
Sbjct: 329 TENGEIKTWGWGEHGQLGLGDDGDRISPVTVNLGYDLNEAASIRVYCGSGFTFALTKP 386