Miyakogusa Predicted Gene
- Lj2g3v1014500.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1014500.1 Non Characterized Hit- tr|I1LV52|I1LV52_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,58.63,0,seg,NULL;
FAMILY NOT NAMED,NULL,CUFF.35911.1
(291 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g078090.1 | plastid developmental protein DAG | HC | chr2:... 299 2e-81
Medtr1g009840.1 | plastid developmental protein DAG | HC | chr1:... 298 5e-81
Medtr4g120340.1 | plastid developmental protein DAG | HC | chr4:... 185 5e-47
Medtr2g078100.1 | cobalt ion-binding protein, putative | HC | ch... 139 3e-33
Medtr1g041745.1 | plastid developmental protein DAG | HC | chr1:... 137 1e-32
Medtr1g075460.1 | plastid developmental protein DAG | HC | chr1:... 128 6e-30
Medtr1g075460.2 | plastid developmental protein DAG | HC | chr1:... 128 6e-30
Medtr2g011000.1 | plastid developmental protein DAG | HC | chr2:... 125 4e-29
Medtr1g041745.2 | plastid developmental protein DAG | HC | chr1:... 125 7e-29
Medtr2g006210.1 | plastid developmental protein DAG, putative | ... 96 4e-20
Medtr6g043040.1 | plastid developmental protein DAG | LC | chr6:... 90 3e-18
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr2g006240.1 | plastid developmental protein DAG, putative | ... 62 8e-10
>Medtr2g078090.1 | plastid developmental protein DAG | HC |
chr2:32418788-32422274 | 20130731
Length = 375
Score = 299 bits (766), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/203 (73%), Positives = 168/203 (82%), Gaps = 10/203 (4%)
Query: 1 MATKIISRLHPKTLT--PFFSRSLSTTCPS--------LRRLRPLAAASIPTRHLFLPSI 50
MA +I SR+ PKTLT F SRS STT + LRRLRPL+A +I +RH+ LPS
Sbjct: 1 MANQIFSRVIPKTLTLTTFLSRSFSTTTTNPSSSALSFLRRLRPLSATAITSRHILLPSF 60
Query: 51 RSLSTRATTSSHNDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKPEGEPSREEIIDGYIK 110
R+ STR TTSS NDPNPN SNRP KE I LDGCD EHWL++MEKPEG+P+R+EIID YIK
Sbjct: 61 RAFSTRPTTSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSYIK 120
Query: 111 TLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKD 170
TLA+V+GSEEEAR IYSVST+HYFAFGAL SEELS+K+KELPKV WVLPDSYLNVREKD
Sbjct: 121 TLAEVIGSEEEARKSIYSVSTRHYFAFGALCSEELSYKLKELPKVRWVLPDSYLNVREKD 180
Query: 171 YGGEPFINGQAVPYDPKYHEEWV 193
YGGEPFINGQAVPYDPKYHEEWV
Sbjct: 181 YGGEPFINGQAVPYDPKYHEEWV 203
>Medtr1g009840.1 | plastid developmental protein DAG | HC |
chr1:1542198-1544398 | 20130731
Length = 327
Score = 298 bits (762), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/195 (72%), Positives = 164/195 (84%), Gaps = 2/195 (1%)
Query: 1 MATKIISRLHPKTLTPFFSRSLSTTC--PSLRRLRPLAAASIPTRHLFLPSIRSLSTRAT 58
MA +II+R+ PKTLTPFFSRSLSTT L RLRPL AA++ +RH+ LPS R+LSTR T
Sbjct: 1 MANQIITRVIPKTLTPFFSRSLSTTTTLSFLCRLRPLTAAAVTSRHILLPSFRALSTRPT 60
Query: 59 TSSHNDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKPEGEPSREEIIDGYIKTLAQVLGS 118
TSS ND NPN SN KE I LDGCD EHWL++ME P+G+ +R+EIIDGYIKT A+V+G+
Sbjct: 61 TSSLNDQNPNWSNPSPKETILLDGCDFEHWLVIMETPDGDATRDEIIDGYIKTFAEVIGN 120
Query: 119 EEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFIN 178
EE AR IYSVST+HYFAFGA+ SEELS+K+ ELPKV WVLPDSYLNV+EKDYGGEPFIN
Sbjct: 121 EELARKNIYSVSTRHYFAFGAVCSEELSYKLNELPKVRWVLPDSYLNVKEKDYGGEPFIN 180
Query: 179 GQAVPYDPKYHEEWV 193
GQAVPYDPKYHEEWV
Sbjct: 181 GQAVPYDPKYHEEWV 195
>Medtr4g120340.1 | plastid developmental protein DAG | HC |
chr4:49892396-49894453 | 20130731
Length = 263
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/188 (55%), Positives = 133/188 (70%), Gaps = 14/188 (7%)
Query: 12 KTLTPFFSRSLSTT----CPSLRRLR---PLAAAS---IPTRHLFLPSIRSLSTRATTSS 61
+TL +R+LS++ SL R R L++AS +P H F +R S+ + S
Sbjct: 8 RTLASILTRALSSSSSSGIASLNRTRFAFALSSASRQTLPIPHSF--PVRFKSSGSGYSP 65
Query: 62 HNDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKPEG-EPSREEIIDGYIKTLAQVLGSEE 120
NDP+PN SNRP KE I LDGCD EHWLI+ME P+ +PS +E+++ Y+KTLAQVLGSEE
Sbjct: 66 LNDPSPNWSNRPPKETILLDGCDYEHWLIIMEFPDNPKPSEDEMVNSYVKTLAQVLGSEE 125
Query: 121 EARMKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQ 180
EA+ KIYSVST Y FGALVSEELS+KIKELP V WVLPDSYL+V KDYGG+ F++G+
Sbjct: 126 EAKKKIYSVSTSTYIGFGALVSEELSYKIKELPGVLWVLPDSYLDVPNKDYGGDLFVDGK 185
Query: 181 AVPYDPKY 188
+P P+Y
Sbjct: 186 VIP-RPQY 192
>Medtr2g078100.1 | cobalt ion-binding protein, putative | HC |
chr2:32424149-32424502 | 20130731
Length = 117
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
Query: 1 MATKIISRLHPKTLTPFFSRSLSTTCPSLRRLRPLAAASIPTRHLFLPSIRSLSTRATTS 60
MA +II+ + PKTLTPFFSRSLS LR LRPLAAA++ +RH+ LPS R+LST TTS
Sbjct: 1 MANQIITLVIPKTLTPFFSRSLSAIS-FLRGLRPLAAAAVTSRHILLPSFRTLSTSPTTS 59
Query: 61 SHNDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKPEGEPSREEIIDGYIKTLAQVLG 117
S ND NPN NRP K + L+GC+ EHWL++M KP+G+PSR+EIIDGYIKT +V+G
Sbjct: 60 SLNDQNPNCYNRPPKHTVVLNGCNFEHWLVVMWKPDGDPSRDEIIDGYIKTFVEVIG 116
>Medtr1g041745.1 | plastid developmental protein DAG | HC |
chr1:15695728-15692169 | 20130731
Length = 217
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 99/152 (65%), Gaps = 5/152 (3%)
Query: 41 PTRHLFLPSIRSLSTRATTSSH---NDPNPNTSNRP-TKEAIALDGCDMEHWLIMMEKPE 96
P+ +++ RA S++ N N N S RP T A GCD EHWLI+M+KP
Sbjct: 34 PSSSFRFTTVQCRVNRAGNSTYSPLNSGNSNFSERPPTDMAPLFPGCDYEHWLIVMDKPG 93
Query: 97 GE-PSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKV 155
GE S++++ID Y++TLA+VLGSEEEA+ KIY+VS + YF FG + EE S K++ LP V
Sbjct: 94 GEGASKQQMIDCYVQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGV 153
Query: 156 TWVLPDSYLNVREKDYGGEPFINGQAVPYDPK 187
+VLPDSY++ KDYG E F+NG+ V P+
Sbjct: 154 LFVLPDSYVDPENKDYGAELFVNGEIVQRSPE 185
>Medtr1g075460.1 | plastid developmental protein DAG | HC |
chr1:33421296-33424686 | 20130731
Length = 235
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 66 NPNTSNRPTKEAIAL-DGCDMEHWLIMMEKPEGE-PSREEIIDGYIKTLAQVLGSEEEAR 123
N + S+RP E L GCD HWLI+++KP GE +++++ID Y+KTLAQVLGSEEEA+
Sbjct: 80 NTSFSDRPPAEMAPLFPGCDYNHWLIIIDKPGGEGATKQQMIDCYVKTLAQVLGSEEEAK 139
Query: 124 MKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVP 183
KIY+VS + YF FG + EE S K++ +P V +VLPDSY++ +DYG E F+NG+ V
Sbjct: 140 KKIYNVSCERYFGFGCELDEETSNKLEGIPGVLFVLPDSYVDPEHQDYGAELFVNGEIVQ 199
Query: 184 YDPK 187
P+
Sbjct: 200 RSPE 203
>Medtr1g075460.2 | plastid developmental protein DAG | HC |
chr1:33421296-33424686 | 20130731
Length = 235
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 66 NPNTSNRPTKEAIAL-DGCDMEHWLIMMEKPEGE-PSREEIIDGYIKTLAQVLGSEEEAR 123
N + S+RP E L GCD HWLI+++KP GE +++++ID Y+KTLAQVLGSEEEA+
Sbjct: 80 NTSFSDRPPAEMAPLFPGCDYNHWLIIIDKPGGEGATKQQMIDCYVKTLAQVLGSEEEAK 139
Query: 124 MKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVP 183
KIY+VS + YF FG + EE S K++ +P V +VLPDSY++ +DYG E F+NG+ V
Sbjct: 140 KKIYNVSCERYFGFGCELDEETSNKLEGIPGVLFVLPDSYVDPEHQDYGAELFVNGEIVQ 199
Query: 184 YDPK 187
P+
Sbjct: 200 RSPE 203
>Medtr2g011000.1 | plastid developmental protein DAG | HC |
chr2:2614958-2612197 | 20130731
Length = 221
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 79/119 (66%), Gaps = 6/119 (5%)
Query: 75 KEAIALDGCDMEHWLIMMEKPEG-EPSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKH 133
+E I L GCD HWLI+ME P+ PSR+++ID Y++TLA VLGS EEA+ +Y+ ST
Sbjct: 65 RETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLQTLATVLGSMEEAKKNMYAFSTTT 124
Query: 134 YFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVP-----YDPK 187
Y F V E S K K LP V WVLPDSY++V+ DYGG+ +ING+ +P Y PK
Sbjct: 125 YTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNMDYGGDKYINGEIIPCKYPTYQPK 183
>Medtr1g041745.2 | plastid developmental protein DAG | HC |
chr1:15695728-15692740 | 20130731
Length = 178
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 90/137 (65%), Gaps = 5/137 (3%)
Query: 41 PTRHLFLPSIRSLSTRATTSSH---NDPNPNTSNRP-TKEAIALDGCDMEHWLIMMEKPE 96
P+ +++ RA S++ N N N S RP T A GCD EHWLI+M+KP
Sbjct: 34 PSSSFRFTTVQCRVNRAGNSTYSPLNSGNSNFSERPPTDMAPLFPGCDYEHWLIVMDKPG 93
Query: 97 GE-PSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKV 155
GE S++++ID Y++TLA+VLGSEEEA+ KIY+VS + YF FG + EE S K++ LP V
Sbjct: 94 GEGASKQQMIDCYVQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGV 153
Query: 156 TWVLPDSYLNVREKDYG 172
+VLPDSY++ KDYG
Sbjct: 154 LFVLPDSYVDPENKDYG 170
>Medtr2g006210.1 | plastid developmental protein DAG, putative | HC
| chr2:499629-496731 | 20130731
Length = 489
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 34 PLAAASIPTRHLFLPSIRSLSTRATTSSHNDPN--PNTSNRPTKEAIALDGCDMEHWLIM 91
P I +R SI LS+R +S P P+T I +GCD HWL +
Sbjct: 79 PNVVDGIQSRSFRSTSISLLSSRYGETSELSPEIGPDT--------ILFEGCDYNHWLFV 130
Query: 92 MEKP-EGEPSREEIIDGYIKTLAQVLG-SEEEARMKIYSVSTKHYFAFGALVSEELSFKI 149
+ P + +P EE+I Y +T A+ L S EEA+ KIY+ ST Y F A+++EE S K
Sbjct: 131 CDFPRDNKPPPEEMIRIYEETCAKGLNISVEEAKKKIYACSTTTYTGFQAVMTEEESKKF 190
Query: 150 KELPKVTWVLPDSYLNVREKDYGGEPFINGQAVPYDP 186
+ +P V +VLPDSY++ K YGG+ +I GQ +P P
Sbjct: 191 EGIPGVIFVLPDSYIDPVNKQYGGDQYIEGQIIPRPP 227
>Medtr6g043040.1 | plastid developmental protein DAG | LC |
chr6:14846758-14845642 | 20130731
Length = 173
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 4 KIISRLHPKTLTPFFSRSLSTTCPSLRRLRPLAAASIPTRHLFLPSI-RSLSTRATTSSH 62
+I+S + T F +R STT AA S P+ L + S + R + ++
Sbjct: 3 RIVSSSFTRLSTQFTTRLFSTT----------AALSKPSSLTLLRFVPMSQTIRQSLNTA 52
Query: 63 NDPNPNTSNRPTKEAIALDGCDMEHWLIMMEKPEGEPSR-EEIIDGYIKTLAQVLGSEEE 121
S +++ G D +HW+I M+ P G+ S +E ID YI+TL VLGS E
Sbjct: 53 ARFGGIHSRAYYSSSLSDGGLDYKHWVIAMDNPGGKDSSWQEKIDCYIQTLGHVLGSVVE 112
Query: 122 ARMKIYSV-STKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFI 177
A+ KIYSV K F FG + E+ + +P V ++LPD Y+++++K YGGE F+
Sbjct: 113 AKKKIYSVYCFKKEFGFGCEIDEQTKNNLGVMPGVMFILPDVYMDIQKKYYGGEDFV 169
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 68 NTSNRPTKEAIALDGCDMEHWLIMMEKPE-GEPSREEIIDGYIKTLAQVLGSEEEARMKI 126
N ++ P + + + +HW++ M+KP G ++ +I+D Y + L +++G+E++A+M I
Sbjct: 62 NQTSIPQTDMLLFPNGNSKHWVVRMDKPAVGVVTKAQIVDHYAQILTKIMGNEKDAQMCI 121
Query: 127 YSVSTKHYFAFGALVSEELSFKIKELPKVTWVLPDSYLNVREKDYGGEPFINGQAVPYDP 186
Y VS K F F + E+ + ++ +P V V PD KDY G N +P
Sbjct: 122 YHVSWKTNFGFCCELDEDCAHELSGVPGVLSVQPDDNFESENKDYEGRNLENSLNMPNSS 181
Query: 187 KYHEE 191
+ +E
Sbjct: 182 EASQE 186
>Medtr2g006240.1 | plastid developmental protein DAG, putative | LC
| chr2:510183-509161 | 20130731
Length = 188
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 81 DGCDMEHWLIMMEKP-EGEPSREEIIDGYIKTLAQVLGSE-EEARMKIYSVSTKHYFAFG 138
+GCD HW I+ + P + +P+ EE+I Y +T A+ L EEA+ KIY+ T Y F
Sbjct: 85 EGCDYNHWFIVFDFPKDNKPTPEEMIRLYEETCAKGLNIRVEEAKKKIYACKTTTYPGFQ 144
Query: 139 ALVSEELSFKIKELPKVTWVLPD 161
A+++EE S K + +P V VLPD
Sbjct: 145 AVMTEEESKKFEGMPGVIHVLPD 167