Miyakogusa Predicted Gene

Lj2g3v1014320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1014320.1 Non Characterized Hit- tr|D8UIB6|D8UIB6_VOLCA
Putative uncharacterized protein OS=Volvox carteri GN=,38.33,4e-18,no
description,NULL; seg,NULL; coiled-coil,NULL; Oxygen-evolving enhancer
protein 3,,PsbQ-like domai,CUFF.35902.1
         (263 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g007607.1 | peptidyl-prolyl cis-trans isomerase | HC | chr...   330   8e-91

>Medtr6g007607.1 | peptidyl-prolyl cis-trans isomerase | HC |
           chr6:1672333-1668576 | 20130731
          Length = 455

 Score =  330 bits (846), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 169/219 (77%), Positives = 183/219 (83%), Gaps = 5/219 (2%)

Query: 50  SMAAITPCHYF-NTHSTRLTYPLPHTN--ARLRGFTARCSYQPP--QHSQFQNKHEGRSF 104
           S  A TP  +  N HS  L YP  +TN     R FT RCSYQ P   HSQF +KH+G+SF
Sbjct: 12  SNFATTPILFHSNNHSKSLNYPFLNTNVGGFSRSFTTRCSYQTPPTHHSQFDHKHKGKSF 71

Query: 105 SLKHCAVSIALAVGLVTGVPTLGWPTDANAASPVLSDLSVLISGPPIKDPGALLRYALPI 164
            LK CA+S+ALAVGL+TGVPTLG P DA+AA+PVL DLSVLISGPPIKDPGALLRY LPI
Sbjct: 72  CLKQCAISLALAVGLITGVPTLGLPNDAHAANPVLPDLSVLISGPPIKDPGALLRYGLPI 131

Query: 165 DNKAVREVQKPLEDITDSLKIAGVKALDSVERNTRQASRALTQGKTLIISGLAESKKEHG 224
           DNKA+REVQKPLEDITDSLKI+GVKALDSVERN RQASRAL QGKTLIISGLAESKKEHG
Sbjct: 132 DNKAIREVQKPLEDITDSLKISGVKALDSVERNVRQASRALKQGKTLIISGLAESKKEHG 191

Query: 225 VELLNKLEAGMDELELIIQDRNRDAVGPKQKELLQYVGG 263
           VELLNKLEAG+DE ELI+QDRNR AV PKQKELLQYVGG
Sbjct: 192 VELLNKLEAGIDEFELILQDRNRVAVAPKQKELLQYVGG 230