Miyakogusa Predicted Gene
- Lj2g3v0934150.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0934150.2 tr|K1R1U0|K1R1U0_CRAGI Denticleless-like protein
(Fragment) OS=Crassostrea gigas PE=4 SV=1,31.43,2e-18,WD40,WD40
repeat; no description,WD40/YVTN repeat-like-containing domain;
LETHAL(2)DENTICLELESS PROT,CUFF.35817.2
(226 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g005220.1 | denticleless-like protein | HC | chr6:664598-6... 287 5e-78
Medtr6g005920.1 | denticleless-like protein | HC | chr6:907393-9... 227 7e-60
Medtr4g104380.1 | nucleotide-binding protein | HC | chr4:4318905... 58 6e-09
Medtr3g075400.1 | nucleotide-binding protein | HC | chr3:3431870... 55 7e-08
Medtr4g102520.1 | Pre-mRNA splicing factor | HC | chr4:42494871-... 48 9e-06
>Medtr6g005220.1 | denticleless-like protein | HC |
chr6:664598-660140 | 20130731
Length = 504
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 143/226 (63%), Positives = 178/226 (78%), Gaps = 4/226 (1%)
Query: 2 SITSVLYLKDQVSIATAGAVESVLKFWDTRNLKSIVTQTCPHPQSTEKQVHGITSLSQDD 61
S+TSVL+LKDQVSIATAGAV SV+KFWDTRNLKSIVTQ CP P ++++HGI+SLSQDD
Sbjct: 221 SVTSVLWLKDQVSIATAGAVNSVVKFWDTRNLKSIVTQACPEP--GKQRLHGISSLSQDD 278
Query: 62 SGLFLTASCMDNRVYLYNTLQLEKGHFKSFSGCQIESFFVKAAISPDASHIVCGSTNGRP 121
SGL L+ASCMD+RVYLYNTLQLEKG + F G +IESFF+KAAISPDAS+IVCGS+N +
Sbjct: 279 SGLLLSASCMDSRVYLYNTLQLEKGALRYFEGGRIESFFIKAAISPDASNIVCGSSNAKA 338
Query: 122 CVWRVNKPQ-DYSILKSHYEEVTAVDWCSSDINKFATASDDPSVHVWRQSSSIRTKETPL 180
VW+V+KPQ + +ILKSHYEEVTAVDWC SD K ATASDD S+H+W + SS+ T +TP
Sbjct: 339 YVWQVDKPQVEPTILKSHYEEVTAVDWCRSDNGKLATASDDFSIHIWNKRSSVTTSKTPF 398
Query: 181 PLRRRIINMPSCHYTLVSDNEETRRKQDAEAFLYREEEPHHQTEPA 226
+RRR++ +P ++ DNEET K ++ L EEP+ + A
Sbjct: 399 SIRRRVMAIPRTECKMLLDNEETCPKS-SDYVLLSNEEPNDPVKSA 443
>Medtr6g005920.1 | denticleless-like protein | HC |
chr6:907393-911200 | 20130731
Length = 420
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 148/217 (68%), Gaps = 27/217 (12%)
Query: 2 SITSVLYLKDQVSIATAGAVESVLKFWDTRNLKSIVTQTCPHPQSTEKQVHGITSLSQDD 61
S+ SVL LKDQ SIATAG V SVLKFWDTRNLKSIVTQ CP P ++++HGI+SLSQDD
Sbjct: 161 SVASVLSLKDQFSIATAGVVNSVLKFWDTRNLKSIVTQACPEP--GKQRLHGISSLSQDD 218
Query: 62 SGLFLTASCMDNRVYLYNTLQLEKGHFKSFSGCQIESFFVKAAISPDASHIVCGSTNGRP 121
SG L+ASCMD+RVYLY+TLQLEKG + F G +IESFF+KAAISPDAS+IVCGS+NG+
Sbjct: 219 SGPLLSASCMDSRVYLYDTLQLEKGALRYFGGGRIESFFIKAAISPDASNIVCGSSNGKA 278
Query: 122 CVWRVNKPQ-DYSILKSHYEEVTAVDWCSSDINKFATASDDPSVHVWRQSSSIRTKETPL 180
VW+V+KPQ + +ILKSHYEEVTAVD + T +TP
Sbjct: 279 YVWQVDKPQVEPTILKSHYEEVTAVD------------------------CFVSTTKTPF 314
Query: 181 PLRRRIINMPSCHYTLVSDNEETRRKQDAEAFLYREE 217
+RRR++ + ++ DNEET K L EE
Sbjct: 315 SIRRRVMAIRRTECKMLLDNEETCPKSSDYGLLSNEE 351
>Medtr4g104380.1 | nucleotide-binding protein | HC |
chr4:43189052-43185561 | 20130731
Length = 514
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 18 AGAVESVLKFWDTRNLKSIVTQTCPHPQSTEKQVHGITSLSQDDSGLFLTASCMDNRVYL 77
+G V+ L+ WD ++ + ++++ H H +TS+S +G S DN L
Sbjct: 373 SGHVDGNLRLWDIQSGR-LLSEVAAHS-------HAVTSISLSRNGNIALTSGRDNLHNL 424
Query: 78 YNTLQLEKGHFKSFSGCQIESFFVKAAISPDASHIVCGSTNGRPCVWRVNKPQDYSILKS 137
++ LE + ++ S + ++ ISPD +H+ GS +G +W ++K + S LK
Sbjct: 425 FDVRSLEVCGTLRATVNRVASNWSRSCISPDNNHVAAGSADGSVHIWSISKGEIISTLKE 484
Query: 138 HYEEVTAVDWCSSDINK-FATASDDPSVHVW 167
H V W S + K A+A + V +W
Sbjct: 485 HTSSVLCCSW--SGMGKPLASADRNGIVSIW 513
>Medtr3g075400.1 | nucleotide-binding protein | HC |
chr3:34318708-34315394 | 20130731
Length = 509
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 18 AGAVESVLKFWDTRNLKSIVTQTCPHPQSTEKQVHGITSLSQDDSGLFLTASCMDNRVYL 77
+G V+ L+ WD ++ K ++++ H + +TS+S +G + S DN L
Sbjct: 368 SGHVDGNLRLWDIKSGK-LLSEVAAHSLA-------VTSISLSRNGNVVLTSGRDNLHNL 419
Query: 78 YNTLQLEKGHFKSFSGCQIESFFVKAAISPDASHIVCGSTNGRPCVWRVNKPQDYSILKS 137
++ LE +G ++ S + ++ ISPD ++ GS++G VW +K LK
Sbjct: 420 FDMRSLEVSGTLKAAGNRVASNWSRSCISPDDKNVAAGSSDGSVYVWSASKADIVGTLKE 479
Query: 138 HYEEVTAVDWCSSDINK-FATASDDPSVHVW 167
H + W S + + A+A + V +W
Sbjct: 480 HTSSILCCTW--SGLGRPLASADKNGVVCIW 508
>Medtr4g102520.1 | Pre-mRNA splicing factor | HC |
chr4:42494871-42492105 | 20130731
Length = 600
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 47 TEKQVHGITSLSQDDSGLFLTASCMDNRVYLYNT---LQLEKGHFKSFSGCQIESFFVKA 103
+E +H + S+S + +L A +DN++ +Y+T QL K K F+G + + +
Sbjct: 463 SEPHMHSMPSISLHPNANWLAAQSLDNQILIYSTREKFQLNKK--KRFAGHIVAGYACQV 520
Query: 104 AISPDASHIVCGSTNGRPCVWRVNKPQDYSILKSHYEEVTAVDWCSSDINKFATASDDPS 163
SPD ++ G G+ W + + LK H W + +K AT D
Sbjct: 521 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVTIGCQWHPLEQSKVATCGWDGL 580
Query: 164 VHVW 167
+ W
Sbjct: 581 IKYW 584