Miyakogusa Predicted Gene

Lj2g3v0933930.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0933930.1 Non Characterized Hit- tr|I1N5J5|I1N5J5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39497
PE,77.82,0,RNA-binding domain, RBD,NULL; coiled-coil,NULL; RRM_6,NULL;
no description,Nucleotide-binding, alpha,CUFF.35797.1
         (916 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g004970.1 | zinc finger CCCH domain protein | HC | chr6:53...  1295   0.0  
Medtr2g449870.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   417   e-116
Medtr2g449950.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   174   4e-43
Medtr2g449940.1 | hypothetical protein | LC | chr2:22032429-2203...   139   1e-32
Medtr2g449970.1 | hypothetical protein | LC | chr2:22043000-2204...    75   3e-13

>Medtr6g004970.1 | zinc finger CCCH domain protein | HC |
           chr6:534944-543221 | 20130731
          Length = 910

 Score = 1295 bits (3352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/922 (70%), Positives = 732/922 (79%), Gaps = 20/922 (2%)

Query: 1   MELKVSSPKLESVAPSDCLSDPEEKEVSXXXXXXXXXXXXXXXXXSQSLERDVSDPVISR 60
           MELK SSPK ESV PSDC SDPEE EVS                 SQSLERDVSDPVI+R
Sbjct: 1   MELKASSPKPESVVPSDCASDPEETEVSDDDDDDRNHKHRKKEDRSQSLERDVSDPVINR 60

Query: 61  PFRKRNKNFGNRPPFKGNESLSFETLKAYGDAATDKEFYSKFEXXXXXXXXXXXXXLDMS 120
           PF+K +KNFGNR PF+ NES++FETL+ Y DA TDK+FYSKF+              DM+
Sbjct: 61  PFKKCHKNFGNRHPFRENESMAFETLRTYNDATTDKDFYSKFDRRRPGMTSGPRMPFDMN 120

Query: 121 QRLRTNQSFTVDPGAGRGRGRESGFWNQRESRLSSMDVASQIVQQRSIPSSLYTGRGLPN 180
           QR+R NQ F  DPGAGRGRGRESGFWNQRESR SS+DVASQ+VQQ  I  +LYTGRGLPN
Sbjct: 121 QRIRPNQLFAGDPGAGRGRGRESGFWNQRESRFSSIDVASQMVQQGPIHPALYTGRGLPN 180

Query: 181 VSNAQNASWNTFGLIPAVPNGGMDMLHPLGLQGTLRQPMNSSLNVNIPRQRCRDFEERGY 240
           +SNAQNASWNTFGL+PAVPNGG+DMLHP+GLQGTLR P+NSSLNVNIPRQRCRDFEERG+
Sbjct: 181 ISNAQNASWNTFGLLPAVPNGGLDMLHPMGLQGTLRPPINSSLNVNIPRQRCRDFEERGF 240

Query: 241 CLRGDMCPMEHGVNRIVIEDVQGLSQFNLPVSLPSAPLIGAPAGSGSHHSVNASTTSVNS 300
           CLRGDMCPMEHGVNRIV+EDVQ LSQFNLPVSL SA L GAP GSGS HSVN ST S+NS
Sbjct: 241 CLRGDMCPMEHGVNRIVVEDVQSLSQFNLPVSLTSAHLTGAPTGSGSLHSVNNSTASMNS 300

Query: 301 KCIPG--KKSVVGDDGMPVDSAYPGLGCTSGADLYDPDQPLWNNSGLESSNALLSIQSSK 358
           KC PG   KS+V D G  +D AYPG GCTSGADLYDPDQPLWN+ GLE            
Sbjct: 301 KCKPGIISKSIVSDVGSSMDGAYPGPGCTSGADLYDPDQPLWNDRGLE------------ 348

Query: 359 IDETELISSEALNSDYPVGTTRTSVNLQGSSSSVWARMNSSRNRFDMKEKTNSMISSFHY 418
           ID+ E +SS+A +S  PV  TRTSV+LQG+SSSVW R+  S+NRFD KEK+N  +SSFH+
Sbjct: 349 IDDAEPMSSDAPDSVCPVEATRTSVSLQGASSSVWGRIGGSKNRFDTKEKSNPTMSSFHF 408

Query: 419 PQNQLKEDNDELVGSRSTSCQGKQIIADDTDPRSMETLLKAQAFNMRNIRKPSQKALCTL 478
           P NQ KEDNDELVG  S S QGKQIIADD  PR+ E  LKAQ  +MRNIRKPSQKAL TL
Sbjct: 409 PDNQPKEDNDELVGCHSASSQGKQIIADDAIPRAFEASLKAQ-IDMRNIRKPSQKALRTL 467

Query: 479 FVSGIPQRSNKRETLLTHFKKFGEVIDIHIPMNSDRAFVQFSKREEAEAALKSPDAVMGN 538
           FV+GIP +SN+R+ LL HFKKFGEVIDI+IP+NS+RAFVQFSKREEAEAAL++PDAVMGN
Sbjct: 468 FVNGIPHKSNRRDALLAHFKKFGEVIDIYIPLNSERAFVQFSKREEAEAALRAPDAVMGN 527

Query: 539 RFIKLFWANRDCV--RNDCTASGNGVIVTPRGQAPAFVPSHPVVTDRRKDIHQTDASKTI 596
           RFIKL+WANRDC+   N  ++SGNG IVTPRGQ P FVPSHPV TDRRKDIHQ DAS+T 
Sbjct: 528 RFIKLWWANRDCIPSENTSSSSGNGAIVTPRGQ-PTFVPSHPVATDRRKDIHQPDASRTT 586

Query: 597 FEVPSPSDQPKHIIAGGPKAPPPSQKKYENLEHLKEELRKKQEMLDQKRNEFKRQLSKLE 656
           FE  SPSD  K +IA  PK PPP Q+K ENLEHLKE+LRKKQEMLDQKRNEFKRQL+KLE
Sbjct: 587 FEESSPSDPSKLVIADAPKVPPPLQRKLENLEHLKEQLRKKQEMLDQKRNEFKRQLNKLE 646

Query: 657 KQATGLKGEIVTEHAAKRPKTSMTTDVAKLTSPQSSDADPGMTSLHAEATTDRNKQLVST 716
           KQATG KGE VTE  AKRPKTSM +DVAKL SPQSSDAD GM+S  AE   D+NKQL ++
Sbjct: 647 KQATGPKGEAVTEQPAKRPKTSMASDVAKLASPQSSDADIGMSSSQAETAVDKNKQLANS 706

Query: 717 VSQSPKASTTMRVLEPTGLNQPIQPFVPVNRYKLDNRPTAFRIITPLPDGLANVASLKEH 776
           VSQSPK ST  +  EP GL Q IQ  VPVNRYKLDNRPTAFRII PLP GLANVA+L+EH
Sbjct: 707 VSQSPKPSTPRKPHEPAGLKQSIQSLVPVNRYKLDNRPTAFRIIPPLPVGLANVAALEEH 766

Query: 777 FLPYGELSSVELVDVQVDDSSQQEAHINFTTRRAAERAFINGKCWKDHNLEFMWLASANS 836
           FLPYGELS+VEL DVQV+DSS+QEA +NFTTR AAE+AF  GKCWKDHNL+FMWL   NS
Sbjct: 767 FLPYGELSAVELEDVQVNDSSEQEARLNFTTRGAAEQAFTKGKCWKDHNLKFMWLTPTNS 826

Query: 837 SNATGSREPSLSA-PKEPLD-RDDHSEEKLGNAVNQEAAVSDGERKNSENENGLKVMEME 894
            NAT SRE SLSA P EPLD  + +SEEK  N+ N EA VSDGE K+SE +N L+ M+ E
Sbjct: 827 GNATVSRERSLSAPPSEPLDTTNSNSEEKSRNSANHEAIVSDGEHKDSETKNDLENMKTE 886

Query: 895 PGEDLQCSPRQVSSAKQSPEGN 916
             EDLQC+  QVSSAKQSPE N
Sbjct: 887 QDEDLQCTTSQVSSAKQSPENN 908


>Medtr2g449870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr2:22009059-22002716 | 20130731
          Length = 599

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/381 (59%), Positives = 265/381 (69%), Gaps = 45/381 (11%)

Query: 169 PSSLYTGRGLPNVSNAQNASWNTFGLIPAVPNGGMDMLHPLGLQGTLRQPMNSSLNVNIP 228
           P  LY G  LPN+SNAQN S NTFGL+PAVPNGG+DMLH +GLQGTLR P++SSLNVNIP
Sbjct: 72  PFILYVG--LPNISNAQNVSCNTFGLLPAVPNGGLDMLHQMGLQGTLRTPIDSSLNVNIP 129

Query: 229 RQRCRDFEERGYCLRGDMCPMEHGVNRIVIEDVQGLSQFNLPVSLPSAPLIGAPAGSGSH 288
            QRCRDFEE G+CLRGDMCPMEHGVNRIV+EDVQ        +  PS           ++
Sbjct: 130 CQRCRDFEECGFCLRGDMCPMEHGVNRIVVEDVQSF------IVQPSCFTYKCTPNWSTY 183

Query: 289 ----HSVNASTTSVNSKCIPG--KKSVVGDDGMPVDSAYPGLGCTSGADLYDPDQPLWNN 342
                SVN  T S+NSKC PG   KS+V D G+P+D AYPG GCTSGADLYDPDQPLWN+
Sbjct: 184 CIWITSVNNLTASMNSKCKPGIISKSIVSDVGLPMDGAYPGPGCTSGADLYDPDQPLWND 243

Query: 343 SGLESSNALLSIQSSKIDETELISSEALNSDYPVGTTRTSVNLQGSSSSVWARMNSSRNR 402
            GLESSNALL++QSSKID+ E +SS+A N   P   TRTS                S + 
Sbjct: 244 RGLESSNALLNMQSSKIDDAEPMSSDAPNRVCPSEATRTS---------------GSLHD 288

Query: 403 FDMKEKTNSMISSFHYPQNQLKEDNDELVGSRSTSCQGKQIIADDTDPRSMETLLKAQAF 462
           F  KEK+N ++SSFH+P NQ KEDNDEL               DD  PR+ +   K    
Sbjct: 289 FTPKEKSNPIVSSFHFPDNQSKEDNDEL--------------EDDAIPRAFKASQKP-LI 333

Query: 463 NMRNIRKPSQKALCTLFVSGIPQRSNKRETLLTHFKKFGEVIDIHIPMNSDRAFVQFSKR 522
           + R+I KPSQKAL TLFV+GIP +SN RE  L HFKKFGEVI+ +IPMNS+RAFVQFSKR
Sbjct: 334 DTRSICKPSQKALHTLFVNGIPHKSNGREA-LAHFKKFGEVINFYIPMNSERAFVQFSKR 392

Query: 523 EEAEAALKSPDAVMGNRFIKL 543
           EEAEAAL++PD+VMGNRFI L
Sbjct: 393 EEAEAALRTPDSVMGNRFINL 413


>Medtr2g449950.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr2:22037929-22038884 | 20130731
          Length = 175

 Score =  174 bits (440), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/172 (55%), Positives = 117/172 (68%), Gaps = 18/172 (10%)

Query: 446 DDTDPRSME---TLLKAQAFNMRNIRKPSQKALCTLFVSGIPQRSNKRETLLTHFKKFGE 502
           DD +P S +   ++ + +A    ++RK SQK L TLFV+GIP RSN++E LL HFK  GE
Sbjct: 19  DDAEPMSSDAPNSVFQVEA-TRTSVRKLSQKGLYTLFVNGIPHRSNRKEALLAHFKMLGE 77

Query: 503 VIDIHIPMNSDRAFVQFSKREEAEAALKSPDAVMGNRFIKLFWANRDCVRNDCTASGNGV 562
           VI+I+IPMNS+RAFVQFS REEAEA+L++ D VMGNRFIKL               GNG 
Sbjct: 78  VINIYIPMNSERAFVQFSNREEAEASLRARDVVMGNRFIKL-------------CKGNGA 124

Query: 563 IVTPRGQAPAFVPSHPVVTDRRKDIHQTDASKTIFEVPSPSDQPKHIIAGGP 614
           IVT RG+ P FVPSHPV TDRRKD HQ++AS+   E  SPS   K +IA  P
Sbjct: 125 IVTLRGKPPTFVPSHPVGTDRRKDNHQSEASRITKE-SSPSKLSKSVIADAP 175


>Medtr2g449940.1 | hypothetical protein | LC |
           chr2:22032429-22032112 | 20130731
          Length = 105

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 79/103 (76%)

Query: 553 NDCTASGNGVIVTPRGQAPAFVPSHPVVTDRRKDIHQTDASKTIFEVPSPSDQPKHIIAG 612
           +   + GNG IVTPR Q P FVPSH V TDRRKDIHQT+AS+TIFE  SPSD  K +IA 
Sbjct: 3   HQLPSRGNGAIVTPRRQPPTFVPSHLVGTDRRKDIHQTEASRTIFEESSPSDASKLVIAD 62

Query: 613 GPKAPPPSQKKYENLEHLKEELRKKQEMLDQKRNEFKRQLSKL 655
            PK PPP  ++ ENLEHLKE+L KK EMLDQKRN+FK QL+KL
Sbjct: 63  APKVPPPLHEELENLEHLKEQLHKKWEMLDQKRNKFKHQLNKL 105


>Medtr2g449970.1 | hypothetical protein | LC |
           chr2:22043000-22043467 | 20130731
          Length = 87

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 39/40 (97%)

Query: 512 SDRAFVQFSKREEAEAALKSPDAVMGNRFIKLFWANRDCV 551
           S++AFVQFSKREEAEA+L++P+AVMGN FIKL+WANRDC+
Sbjct: 27  SEQAFVQFSKREEAEASLRTPEAVMGNHFIKLWWANRDCI 66