Miyakogusa Predicted Gene
- Lj2g3v0932920.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0932920.1 Non Characterized Hit- tr|G5DXD8|G5DXD8_SILLA
Putative uncharacterized protein (Fragment) OS=Silene
,31.67,4e-18,coiled-coil,NULL; DUF1421,Protein of unknown function
DUF1421; seg,NULL; SUBFAMILY NOT NAMED,NULL; F,CUFF.35825.1
(516 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g004930.1 | DNA-binding protein, putative | HC | chr6:5063... 254 2e-67
Medtr0004s0130.1 | structural constituent of cell wall protein, ... 76 7e-14
Medtr2g090360.1 | structural constituent of cell wall protein, p... 69 1e-11
Medtr2g090360.2 | structural constituent of cell wall protein, p... 69 1e-11
Medtr6g004940.2 | DUF1421 family protein | HC | chr6:515163-5193... 63 6e-10
Medtr6g004940.1 | DUF1421 family protein | HC | chr6:516217-5193... 63 6e-10
>Medtr6g004930.1 | DNA-binding protein, putative | HC |
chr6:506365-512095 | 20130731
Length = 565
Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 169/341 (49%), Positives = 194/341 (56%), Gaps = 31/341 (9%)
Query: 1 MNTTPFMDKQIMDLTHGSSSPQQQSHTNDFIDLMKXXXXXXXXXXXXXXXXXXXXXXXXN 60
MNTT FMDKQIMDL+HG SS ++ NDFIDL+K +
Sbjct: 1 MNTTSFMDKQIMDLSHGGSSSTNNNNNNDFIDLIKNNREHHEEEEDEEDND--------S 52
Query: 61 LNHHRVVEDEGRGGGNGINTDDIVPSYDFKPIRPLAASNYDSAPNLSAAFSRPWNSDSNQ 120
L HH+ G GI TDDIVPSYDF+PIR L N S++FSRPWNSDSN
Sbjct: 53 LIHHK--------NGGGIKTDDIVPSYDFQPIRSLPD-------NSSSSFSRPWNSDSNS 97
Query: 121 PITKSYSSLDSIEPLKVNVEKDRNAFDPQILSEIDQTVKKHTENLLHVLEGVSARLTQLE 180
+K+Y SLDS EP KV VEK+++A D IL EID+T+KKH +NL HVLEGVSARLTQ+E
Sbjct: 98 -NSKNYGSLDSFEPAKVTVEKNQSAVDASILLEIDRTMKKHMDNLHHVLEGVSARLTQVE 156
Query: 181 TRTRHLENSMDDLKVSVGNNHGSTDGKFRQLENILREVQSGVQTIKDKQDIVXXXXXXXX 240
TRT HLE+SMDDLKVSVGNNHG TDGK R LENIL EVQ+GV IKDKQDI+
Sbjct: 157 TRTHHLESSMDDLKVSVGNNHGITDGKLRLLENILSEVQTGVHDIKDKQDIMQAQLQLAK 216
Query: 241 XXVSK-TDQQSETQTSAGTDPVXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXX 299
VSK T+QQSETQT A +D V +
Sbjct: 217 LQVSKTTEQQSETQTRATSDAVQQTSSVSASAPLQTQHYL--PSSYNLPQSIPVVSPPNA 274
Query: 300 XXXXXXXXXXXXXXXXTQIP----AVPQRDPYFPPPVQSQE 336
+QIP VPQRDPY PPPVQSQE
Sbjct: 275 PPQQSLPPPAQLPNQYSQIPTPTPTVPQRDPYLPPPVQSQE 315
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 395 GHHVEEPPYVPSQTYPPNLRXXXXXXXXXXXXXXXXXFYGTAPHAYEXXXXXXXXXXXXX 454
GHH+EEPPYVPSQTYPPNLR FYGT P YE
Sbjct: 376 GHHLEEPPYVPSQTYPPNLRQPPSQPPSGPPQPSQQ-FYGTPPQGYEPPSSRPGASYSSG 434
Query: 455 XXXXXXXAEXXXXXXXXXXXXXXXXLPTASLAVSGGSGYPQLPTARVLPQAIPT 508
E LP AS A SGG+ YPQLPTARVLPQAIPT
Sbjct: 435 YGTLSGPTEPYRYGGPPQYGSKQSQLPNASAASSGGNSYPQLPTARVLPQAIPT 488
>Medtr0004s0130.1 | structural constituent of cell wall protein,
putative | HC | scaffold0004:37626-31693 | 20130731
Length = 527
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 18/165 (10%)
Query: 71 GRGG-GNGINTDDIVPSY-DFKPIRPLAASNYDSAPNLSAAFSRPWNSDSNQPITKSYSS 128
GRG G +DDI+ SY DF SN DS N + P NS + KS +
Sbjct: 7 GRGNPGFDFASDDILCSYEDF--------SNRDSNSN---NHNDPSNSTKD--FHKSRVA 53
Query: 129 LDSIEPLKV-NVEKDRNAFDPQILSEIDQTVKKHTENLLHVLEGVSARLTQLETRTRHLE 187
S+ P N +D + D +++ +++++KK+ +NL+ LEG+S+RL+QLE +L+
Sbjct: 54 RTSVFPAPAYNPPEDSLSQD--VIATVEKSMKKYADNLMRFLEGISSRLSQLELYCYNLD 111
Query: 188 NSMDDLKVSVGNNHGSTDGKFRQLENILREVQSGVQTIKDKQDIV 232
S+ +++ + +HG D K + LE ++EV VQ ++DKQ++
Sbjct: 112 KSIGEIRSDLNRDHGDQDSKLKSLEKHVQEVHRSVQILRDKQELA 156
>Medtr2g090360.1 | structural constituent of cell wall protein,
putative | LC | chr2:38464803-38468087 | 20130731
Length = 500
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 56/83 (67%)
Query: 150 ILSEIDQTVKKHTENLLHVLEGVSARLTQLETRTRHLENSMDDLKVSVGNNHGSTDGKFR 209
I + +++++K T++L+ LEG+S+RL+QLE +++ S+ +LK + ++H D K +
Sbjct: 72 IATTVEKSMKTCTDDLMRFLEGISSRLSQLELYCYNIDKSIGELKSELTSDHEEADSKLK 131
Query: 210 QLENILREVQSGVQTIKDKQDIV 232
L+ L+EV VQ ++DKQ++V
Sbjct: 132 SLDKHLQEVHRSVQILRDKQELV 154
>Medtr2g090360.2 | structural constituent of cell wall protein,
putative | LC | chr2:38466128-38468084 | 20130731
Length = 480
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 56/83 (67%)
Query: 150 ILSEIDQTVKKHTENLLHVLEGVSARLTQLETRTRHLENSMDDLKVSVGNNHGSTDGKFR 209
I + +++++K T++L+ LEG+S+RL+QLE +++ S+ +LK + ++H D K +
Sbjct: 52 IATTVEKSMKTCTDDLMRFLEGISSRLSQLELYCYNIDKSIGELKSELTSDHEEADSKLK 111
Query: 210 QLENILREVQSGVQTIKDKQDIV 232
L+ L+EV VQ ++DKQ++V
Sbjct: 112 SLDKHLQEVHRSVQILRDKQELV 134
>Medtr6g004940.2 | DUF1421 family protein | HC | chr6:515163-519324
| 20130731
Length = 370
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 395 GHHVEEPPYVPSQTYPPNLRXXXXXXXXXXXXXXXXXF---------------------- 432
GH +EEPPY P Q YPPNLR
Sbjct: 174 GHRLEEPPYAPFQNYPPNLRHPPTLPQGYEPLSSISGASYSSGYDTLPGPAEPNRYGRPP 233
Query: 433 -YGTAPHAYEXXXXXXXXXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXLPTASLAVSGGS 491
YGT P YE AE L TAS+A GS
Sbjct: 234 QYGTPPQGYEPPSSRFGASYSSRYDTLSEIAEPNRYGGPPQYGGKQPQLHTASVAYISGS 293
Query: 492 GYPQLPTARVLPQAIPTASAVSGG 515
GYPQLPTA +LPQAIPT S+VS G
Sbjct: 294 GYPQLPTAYILPQAIPTESSVSFG 317
>Medtr6g004940.1 | DUF1421 family protein | HC | chr6:516217-519324
| 20130731
Length = 370
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 395 GHHVEEPPYVPSQTYPPNLRXXXXXXXXXXXXXXXXXF---------------------- 432
GH +EEPPY P Q YPPNLR
Sbjct: 174 GHRLEEPPYAPFQNYPPNLRHPPTLPQGYEPLSSISGASYSSGYDTLPGPAEPNRYGRPP 233
Query: 433 -YGTAPHAYEXXXXXXXXXXXXXXXXXXXXAEXXXXXXXXXXXXXXXXLPTASLAVSGGS 491
YGT P YE AE L TAS+A GS
Sbjct: 234 QYGTPPQGYEPPSSRFGASYSSRYDTLSEIAEPNRYGGPPQYGGKQPQLHTASVAYISGS 293
Query: 492 GYPQLPTARVLPQAIPTASAVSGG 515
GYPQLPTA +LPQAIPT S+VS G
Sbjct: 294 GYPQLPTAYILPQAIPTESSVSFG 317