Miyakogusa Predicted Gene

Lj2g3v0932700.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0932700.1 Non Characterized Hit- tr|B9S651|B9S651_RICCO RNA
binding protein, putative OS=Ricinus communis
GN=R,61.36,0,Invasin/intimin cell-adhesion fragments,Invasin/intimin
cell-adhesion; Big_2,Bacterial Ig-like, grou,CUFF.35787.1
         (1957 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g004840.1 | embryo defective 3012 protein | HC | chr6:4726...  3065   0.0  

>Medtr6g004840.1 | embryo defective 3012 protein | HC |
            chr6:472638-447422 | 20130731
          Length = 1956

 Score = 3065 bits (7945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1502/1957 (76%), Positives = 1652/1957 (84%), Gaps = 11/1957 (0%)

Query: 4    MALLLCCAVMMVALVEHAASL---HSASGPHIADVNLLLPPKMTFPVEYRLQGSDGCFTW 60
            MAL+L     + A VE  A+    H++SGPHIADVNLLLPPKMTFPV+YRLQGSDGCF W
Sbjct: 8    MALILLI-FAITAFVERVAASSPPHASSGPHIADVNLLLPPKMTFPVQYRLQGSDGCFKW 66

Query: 61   SWDHHDILSVLPEYNSSNKCSTSARLRSIAPYSGRKETAVYAADVKTGTVIRCKVFIDNI 120
            SWDHHDILSVLPEYNSSNKCSTSARLRSIAPYSGRKETAVYA DVKTG VIRCKVFIDNI
Sbjct: 67   SWDHHDILSVLPEYNSSNKCSTSARLRSIAPYSGRKETAVYATDVKTGIVIRCKVFIDNI 126

Query: 121  SRIQIFHNSIKLDLDGLATLHVRAFDNEENVFSSLVGLQFMWSLMPEANGSPHHIVNVPL 180
            SRIQIFHNSIKLDLDGLATLHVRAFDNEENVFSSL GLQFMWSLMPEANG P+ +VNVP+
Sbjct: 127  SRIQIFHNSIKLDLDGLATLHVRAFDNEENVFSSLAGLQFMWSLMPEANGLPYRLVNVPI 186

Query: 181  KDSPLSDCGGLCGDLDIQIKLEDSGVFSDLFVVKGTEIGHETVSVHLLEPQSKKLADEIV 240
            KDSPLSDCGGLCGDLDIQIKLED GVFSDLFVVKG EIGHE VSVHLLEPQ + +ADE++
Sbjct: 187  KDSPLSDCGGLCGDLDIQIKLEDDGVFSDLFVVKGIEIGHEIVSVHLLEPQLQNMADELL 246

Query: 241  LTVAEAMSLSPPSPVFVLVGSVIPYSLKVIRGNVPQVVSLPSPHHLWSVSNASVAQVDSK 300
            LTVAEAMSL PPSPVFVLVG+ +P++LKVIRGN+PQVV+LPSPHH WS SNASVAQVDSK
Sbjct: 247  LTVAEAMSLDPPSPVFVLVGAAVPFTLKVIRGNIPQVVALPSPHHQWSASNASVAQVDSK 306

Query: 301  TGLAYAWNLGMTAVIVEDTRVAGHLQVSSLNVVXXXXXXXXXXXXXXXXXXVEGIKSIPL 360
            TGL YA NLGMTA+IVEDTRVAGH+QVSSLNVV                  VEG++S PL
Sbjct: 307  TGLVYASNLGMTAIIVEDTRVAGHVQVSSLNVVLPAVLGLYITPLSSSGDPVEGLESSPL 366

Query: 361  MARWYVVSGHQYLIQLKVFAHGHDTQEIYITEKDDVKVYDDQSDYWRTSWVSNDIALKHG 420
            MARW+VVSG QYLIQ+KVFAH HD QEIYITE DDVKVYD +SDYWRT  VSNDIA++HG
Sbjct: 367  MARWHVVSGRQYLIQIKVFAHAHDAQEIYITENDDVKVYDYRSDYWRTVSVSNDIAVRHG 426

Query: 421  WRNSKILEAYSPGLGKLTASLSYPGGADDRKEIIKVVQEVMVCDQVKFTLDNESGVVLLP 480
            WRN+K+L+AYSPGLG LTASLSYPGGADD+KEII VVQEVMVCDQVKFTL NESG+++LP
Sbjct: 427  WRNTKLLKAYSPGLGNLTASLSYPGGADDKKEIITVVQEVMVCDQVKFTLGNESGIIVLP 486

Query: 481  WVPGVYQDVELKAIGGCAKTVSDYKWLXXXXXXXXXXXXGIVQAKKPGKATIKVLSVYDS 540
            W PGV+QD ELKA+GGCAK  SDYKWL            G +Q KKPGKATIKV+SVYDS
Sbjct: 487  WAPGVHQDAELKAVGGCAKAESDYKWLSSDISTVSVSASGTIQGKKPGKATIKVVSVYDS 546

Query: 541  LNYDEVLVEVSIPASMVMLHNFPVETVVGSHLQAAVTMKAVNGAFFYRCDAFNSLIKWKT 600
            LNYDEVLVEVSIP+SMVMLHNFPVETVVGSHLQAAVTMK  NGAFFYRCDAFNSLIKWK 
Sbjct: 547  LNYDEVLVEVSIPSSMVMLHNFPVETVVGSHLQAAVTMKTANGAFFYRCDAFNSLIKWKA 606

Query: 601  GSESFVIVNATQELSYLETAPYSQLHPSADDFPCSWTHIYASNPSQAVIHAILSKEHNQY 660
            GSESFVIV+ +QE SYLET P SQLHPS   FPCSWT++YASN  QAVIHAILSKE++Q+
Sbjct: 607  GSESFVIVDVSQESSYLETVPSSQLHPSDVGFPCSWTYLYASNTGQAVIHAILSKEYHQF 666

Query: 661  GLGPVVLKASLRIAAYQPLVVYQAGDGNHFGGYWFDSAQADDNKLSHSLEELYLVPGTYL 720
              GPVVLKAS+RIAAY P +V Q GDGNHFGGYW D A A++NK  H+LEEL LVPGT L
Sbjct: 667  SHGPVVLKASVRIAAYLPFIVRQVGDGNHFGGYWLDLAPAENNKQLHNLEELNLVPGTNL 726

Query: 721  DLLLFGGPERWDKGVNFTETVEVLDEENALAEDGLLVHRVSDDYRTSYGILCQTLGTFKL 780
            DL L GGPE W K V+F ETV+VLD ENAL +DG+LVHR+S + +T Y +LCQTLGTF+L
Sbjct: 727  DLSLVGGPEPWSKHVDFIETVDVLDGENALTDDGVLVHRISGNNKTLYRVLCQTLGTFRL 786

Query: 781  LFKRGNLVGDDHPLPSVAEARLSVICTIPSSIVLLADEPVNXXXXXXXXXXXXXTSGRLR 840
            LF+RGN VGDDHPLPSVAEA L V C+IPSSIVL+ADEPVN             +S RLR
Sbjct: 787  LFRRGNSVGDDHPLPSVAEAWLPVTCSIPSSIVLIADEPVNEHEIIRAAAHAERSSRRLR 846

Query: 841  DAPVTVANGRIIRITAAGISDSGEAFANXXXXXXXXXXXXCDGLAYWDYAFDTVKSNNWE 900
            D P+TVANGR IRI+AAGIS SGEAFAN            C+ LAYWDYAFD VKSN+WE
Sbjct: 847  DTPITVANGRTIRISAAGISASGEAFANSSSLSLKWELSSCEELAYWDYAFDIVKSNDWE 906

Query: 901  RFLVLQNESGLCVVRATVTGFLDSFRDDTFHQFSQAENVLTDAIRLQLVSTLRVDPEFNL 960
            RFLVL+NESGLC+VRATVTGFL    DDTFHQF Q ENVLTDAIRLQLVS LRVDPEF+L
Sbjct: 907  RFLVLRNESGLCIVRATVTGFLGGLGDDTFHQFPQTENVLTDAIRLQLVSMLRVDPEFSL 966

Query: 961  IYFNPNAKVNLSITGGSCFLEALTNDSQVVEVIQPPSGLECLQLILSPKGLGIANLTLYD 1020
            IYFN NAKVNLSITGGSCFLEA+TNDSQVVEV QPP+GLEC QLILSPKGLGIANLTLYD
Sbjct: 967  IYFNSNAKVNLSITGGSCFLEAVTNDSQVVEVTQPPTGLECQQLILSPKGLGIANLTLYD 1026

Query: 1021 VGLTPPLRASALVQVADIDWIKIKSGEEISLMEGSLQTIYLTAGTNGGNSFHSSQFVYMN 1080
            +GLTPPL+ASALVQVADI+WI+I SGEEISLMEGSL TI L AGTNGG SFH+SQFVYMN
Sbjct: 1027 MGLTPPLKASALVQVADIEWIQIMSGEEISLMEGSLLTIDLLAGTNGGTSFHASQFVYMN 1086

Query: 1081 LHVNVEDSIIELVDTDNFSSLVGGHVNAASFKIKGTHLGITTLYVSTIQHFGHVIQSQAI 1140
            +HV+VED+IIEL+D D+ SSL G HVNA +FKIKG +LGITTLYVS +QHFGHVIQSQAI
Sbjct: 1087 IHVHVEDTIIELLDADSLSSLDGRHVNAPNFKIKGRYLGITTLYVSALQHFGHVIQSQAI 1146

Query: 1141 KVEVYKAPRIHPHDIFLLPGASYVFTMEGGPTLSGHVEYAIENDKIASIDKYSGRLSAVA 1200
            +VEVYKAPRIHPH+IFLLPGASYV T+EGGP+L  HVEYA+E+DKIASID+YSGRL A +
Sbjct: 1147 RVEVYKAPRIHPHEIFLLPGASYVLTVEGGPSLGVHVEYAVESDKIASIDRYSGRLLANS 1206

Query: 1201 LGNTTILASVFVKGNTVICDARSTLRVGIPSTITLHTQSEQLGVGRTLPIYPLFPEGNLF 1260
            +GNTTILASVFV GNTVIC+ARS LRVG+PSTI LH QSEQLGVGR LPIYPLFPEGNLF
Sbjct: 1207 IGNTTILASVFVNGNTVICEARSILRVGVPSTIKLHMQSEQLGVGRKLPIYPLFPEGNLF 1266

Query: 1261 SFYELCKNYKWTIDDEKVLSFKVTESLHVDKYGIQFTASEESQVTGYFDENDFGFINVLH 1320
            SFYELCK+Y+WTI+DEKVL+FKV  SLH +KYG   +ASEESQV G FDEND GFINVL+
Sbjct: 1267 SFYELCKSYQWTIEDEKVLTFKVAGSLHGEKYG---SASEESQVGGNFDENDLGFINVLY 1323

Query: 1321 GRSAGKTNVTVSFSCELSNFGSKTQSKFYSSSLSVTVVPDLPLALGVPITWIXXXXXXXX 1380
            GRSAGKTNV V+F CE S  GSKTQ   YSSSLSVTVVPDLPLALG PITWI        
Sbjct: 1324 GRSAGKTNVAVAFFCEFSTSGSKTQPMLYSSSLSVTVVPDLPLALGFPITWILPPYYTTT 1383

Query: 1381 XXXXXXXXXXXQYDSPNRKGTIKYSLLRSLEKNAALQNDAIFIDGDRIKTAESNALACIQ 1440
                       QYD   RKGTIKYS   SL+KN A+Q DA+FIDGDRIKT E+N LACIQ
Sbjct: 1384 SLLPSSSESYTQYDGQTRKGTIKYSSF-SLDKN-AMQKDAVFIDGDRIKTTEANNLACIQ 1441

Query: 1441 ANDRITGRIEIASCVKVAEVTQIRIASKEVLLKVIDLAVGAELDLPTTFYDALGSPFYEA 1500
            A DR TGRI IASCV+VAEVTQIRIASKEVLLKVIDLAVGAELDLPT+FYD LG+PFYEA
Sbjct: 1442 AKDRTTGRIVIASCVEVAEVTQIRIASKEVLLKVIDLAVGAELDLPTSFYDILGNPFYEA 1501

Query: 1501 YNALPFFAETNYPDVLYINKTSDGKGNVHIKAIRHGKALVRMTISDAPQKSDYMLIRVGA 1560
             NA+ F+AETNYPDVL INKT+DGKGNVHIKAIRHGKALVR+ IS+A QKSDY+LIRVGA
Sbjct: 1502 CNAVRFYAETNYPDVLAINKTADGKGNVHIKAIRHGKALVRVAISEAQQKSDYVLIRVGA 1561

Query: 1561 QIYPPNPVLHIGSPLNLSIKGLSDKVSGHWSTTNGSVISVDPLSGVAKVTGEGSAQVSFH 1620
             +YP NPVLHIGSP+NLSIKGL+DKVSG W TTN SVISVDPL+GVAK  GEGSAQV FH
Sbjct: 1562 HVYPRNPVLHIGSPINLSIKGLNDKVSGQWLTTNESVISVDPLTGVAKAIGEGSAQVYFH 1621

Query: 1621 YAKSKLQTTITVLKGDSVSVDAPKGMLTNVPYPAKGYNFSVKFSNTYGERLGAAGGNKRI 1680
            YAKSKLQTT+TVLKG S+SVDAPKGMLTNVPYPAKGYNFSVKFS TYGE L A GGNK I
Sbjct: 1622 YAKSKLQTTVTVLKGHSISVDAPKGMLTNVPYPAKGYNFSVKFS-TYGESLDAPGGNKII 1680

Query: 1681 SFDCRVDPPFVGYVKPWLDLDSGNSYCLFFPHSPEHLVHSAPKLEGMRPDVSLSIYASLK 1740
            SFDCRVDP ++GYVKPWLDL++GNSYCLFFP+SPEHLVHS PK EG+RPD+S+SIYASLK
Sbjct: 1681 SFDCRVDPLYIGYVKPWLDLETGNSYCLFFPYSPEHLVHSIPKSEGIRPDISVSIYASLK 1740

Query: 1741 EHEHVSGSASTLFIGGFSLMEMGKSPMQLNLTPGSNKTYMTILGNTDVEIHWRYRDLIMI 1800
            EHEHV GSAS LFIGGFS+MEMGK PMQLNLTP  NKTY+TI+GNTDVEIHW  RDLIMI
Sbjct: 1741 EHEHVLGSASALFIGGFSIMEMGKGPMQLNLTPEFNKTYITIVGNTDVEIHWNRRDLIMI 1800

Query: 1801 SAIQKEDFGLRGFAQYEVKLLKAKRFKDKITITLPANGQGLEIDISYEPEPEETVLPSVP 1860
            +   K+DFG+RGFA+YEVKLLKA++FKDKI I LP NGQ +EIDI+YEP  E+T L +V 
Sbjct: 1801 APTSKDDFGVRGFARYEVKLLKAEKFKDKIIIILPTNGQRMEIDITYEPASEKTALSNVT 1860

Query: 1861 INKTLWAXXXXXXXXXXXXXXXXXXXXDRPDRSQQTSAPVTASIGAPTTPERSSPGVPNE 1920
            +NK  WA                    DRP RSQQTSAPVTA+I +P T  RSSP   NE
Sbjct: 1861 MNKAPWASIFGCLLLLILPIAAFIYFTDRPYRSQQTSAPVTATIASPATSYRSSPTGSNE 1920

Query: 1921 MSPRTPQPFVDYVRRTIDETPYYKREGRRRVNPQNTF 1957
            MSPRTPQPFVDYVRRTIDETPYYKREG RRVNPQ T+
Sbjct: 1921 MSPRTPQPFVDYVRRTIDETPYYKREG-RRVNPQKTY 1956