Miyakogusa Predicted Gene
- Lj2g3v0932680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0932680.1 tr|B7EPZ7|B7EPZ7_ORYSJ (Rice Genome Annotation
Project) RNA recognition motif family protein
OS=Oryz,49.37,0.00000000002,RRM_1,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; seg,NULL; no
description,Nucleotid,CUFF.35793.1
(310 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 403 e-112
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 246 2e-65
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 159 4e-39
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 159 4e-39
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 159 4e-39
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 156 2e-38
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 156 2e-38
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 156 3e-38
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 156 3e-38
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 153 2e-37
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 151 8e-37
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 150 1e-36
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 108 7e-24
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 108 7e-24
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 108 7e-24
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 108 7e-24
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 2e-17
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 79 7e-15
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 77 2e-14
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-13
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 75 1e-13
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 5e-13
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 3e-12
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 3e-12
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 3e-12
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 6e-12
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 65 6e-11
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 65 7e-11
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 8e-11
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 65 1e-10
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 3e-10
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 3e-10
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 3e-10
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 3e-10
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 63 4e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 63 4e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 63 4e-10
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 62 5e-10
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 62 7e-10
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 9e-10
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 9e-10
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 61 1e-09
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 4e-09
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 5e-09
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 59 8e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-09
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 58 1e-08
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 58 1e-08
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 57 2e-08
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 57 2e-08
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 57 2e-08
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 57 2e-08
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 57 2e-08
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 57 3e-08
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 56 4e-08
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 5e-08
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 5e-08
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 5e-08
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 5e-08
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 56 5e-08
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 6e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 55 7e-08
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 7e-08
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 7e-08
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 8e-08
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 55 8e-08
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 9e-08
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 9e-08
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 55 1e-07
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 55 1e-07
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 54 1e-07
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 54 1e-07
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 54 2e-07
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 53 3e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 52 5e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 6e-07
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 52 6e-07
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 52 8e-07
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 51 2e-06
Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like pro... 51 2e-06
Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like pro... 51 2e-06
Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like pro... 51 2e-06
Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like pro... 51 2e-06
Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like pro... 51 2e-06
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-06
Medtr8g100160.1 | RNA recognition motif 1 in plant MEI2-like pro... 50 3e-06
Medtr8g100160.2 | RNA recognition motif 1 in plant MEI2-like pro... 50 3e-06
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 50 3e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/315 (69%), Positives = 231/315 (73%), Gaps = 6/315 (1%)
Query: 1 MESPGNDHVVG-GGESNDVARTYSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIA 59
MESP N+H++G GGE NDV R Y H E QHHNSQ LTGDGASPGKIFIGGLARETTIA
Sbjct: 1 MESPKNEHIIGTGGEQNDVGRNYEH-EHEQQHHNSQSLTGDGASPGKIFIGGLARETTIA 59
Query: 60 QFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT 119
QFIKHFGKYGEITDSVIMKDRKT QPRGFGFITYADPSVVDKVIED+HIIN KQVEIKRT
Sbjct: 60 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRT 119
Query: 120 IPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFI 179
IPRGAVGSKDF+TKKIFVGGIPSNVTEDEFRDFFTRYGEVKD+QIMRDHSTNRSRGFGF+
Sbjct: 120 IPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFV 179
Query: 180 TFDSEDAVDDLLSMGNKIDFAGTQVEIXXXXXXXXXXXXXXXXRYNDSRSSY-SSGYGEA 238
TFD+E+AVDDLLSMGNKI+FAGTQVEI RYNDSRSSY S GYG+A
Sbjct: 180 TFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPPPSSKRYNDSRSSYGSGGYGDA 239
Query: 239 YDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXDPSLGFAG 295
YDGF DPSL +AG
Sbjct: 240 YDGFGGGFGGVGGGYSRSGSAYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSLAYAG 299
Query: 296 RYGGSFSRGYDLGGY 310
RYGGSF YDL GY
Sbjct: 300 RYGGSFRSSYDLSGY 314
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/172 (68%), Positives = 147/172 (85%)
Query: 35 QPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYA 94
P +GDGASPGKIFIGGLA++TT+ +F+K+F +YGEITDSVIMKDR T +PRGFGFITYA
Sbjct: 8 NPHSGDGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYA 67
Query: 95 DPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFT 154
D SVVD+VI++ HIIN KQVEIKRTIP+GA + DFKTKKIFVGGIP+ V+EDE + FF+
Sbjct: 68 DASVVDQVIQENHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFS 127
Query: 155 RYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
++G V +++I+RDH+T RSRGFGF+ FDS+ AVD+LL+ GN ID TQVEI
Sbjct: 128 KHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEI 179
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 111/162 (68%), Gaps = 14/162 (8%)
Query: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI 103
PGK+FIGG++ +T + ++F +G++ ++VIMKDR T + RGFGF+ +ADPSV ++V+
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 104 EDTHIINGKQVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTEDEF 149
+ H+I+G+ VE K+ +PR G+ +TKKIFVGG+ S VTE +F
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+++F ++G + D +M DH+T R RGFGFIT+DSE+AV+ +L
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 164
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGLA T + F +F ++G ITD V+M D T +PRGFGFITY V+KV+
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 106 T-HIINGKQVEIKRTIPR 122
T H +NGK VE+KR +P+
Sbjct: 167 TFHELNGKMVEVKRAVPK 184
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+F+GGI + ED R +F +G+V + IM+D +T R+RGFGF+ F + ++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 194 GNKID 198
+ ID
Sbjct: 65 KHVID 69
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 111/162 (68%), Gaps = 14/162 (8%)
Query: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI 103
PGK+FIGG++ +T + ++F +G++ ++VIMKDR T + RGFGF+ +ADPSV ++V+
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 104 EDTHIINGKQVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTEDEF 149
+ H+I+G+ VE K+ +PR G+ +TKKIFVGG+ S VTE +F
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+++F ++G + D +M DH+T R RGFGFIT+DSE+AV+ +L
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 164
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGLA T + F +F ++G ITD V+M D T +PRGFGFITY V+KV+
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 106 T-HIINGKQVEIKRTIPR 122
T H +NGK VE+KR +P+
Sbjct: 167 TFHELNGKMVEVKRAVPK 184
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+F+GGI + ED R +F +G+V + IM+D +T R+RGFGF+ F + ++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 194 GNKID 198
+ ID
Sbjct: 65 KHVID 69
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 111/162 (68%), Gaps = 14/162 (8%)
Query: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI 103
PGK+FIGG++ +T + ++F +G++ ++VIMKDR T + RGFGF+ +ADPSV ++V+
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 104 EDTHIINGKQVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTEDEF 149
+ H+I+G+ VE K+ +PR G+ +TKKIFVGG+ S VTE +F
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+++F ++G + D +M DH+T R RGFGFIT+DSE+AV+ +L
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 164
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGLA T + F +F ++G ITD V+M D T +PRGFGFITY V+KV+
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 106 T-HIINGKQVEIKRTIPR 122
T H +NGK VE+KR +P+
Sbjct: 167 TFHELNGKMVEVKRAVPK 184
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+F+GGI + ED R +F +G+V + IM+D +T R+RGFGF+ F + ++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 194 GNKID 198
+ ID
Sbjct: 65 KHVID 69
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 113/159 (71%), Gaps = 12/159 (7%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + ++F YGE+ ++VIM+DR T + RGFGF+ ++DP+V ++VI
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVII 65
Query: 105 DTHIINGKQVEIKRTIPR----------GAV-GSK-DFKTKKIFVGGIPSNVTEDEFRDF 152
D HII+G+ VE K+ +PR G+V GS +TKKIFVGG+PS +TE +F+ +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 153 FTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
F ++G + D +M DH+T R RGFGFIT+DSE+AVD +L
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 113/159 (71%), Gaps = 12/159 (7%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + ++F YGE+ ++VIM+DR T + RGFGF+ ++DP+V ++VI
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVII 65
Query: 105 DTHIINGKQVEIKRTIPR----------GAV-GSK-DFKTKKIFVGGIPSNVTEDEFRDF 152
D HII+G+ VE K+ +PR G+V GS +TKKIFVGG+PS +TE +F+ +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 153 FTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
F ++G + D +M DH+T R RGFGFIT+DSE+AVD +L
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 164
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + +HF YG++ ++ +M+++ T +PRGFGF+ ++DPSV+D+V+E
Sbjct: 6 GKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE 65
Query: 105 DTHIINGKQVEIKRTIPR------------------GAVGSKDFKTKKIFVGGIPSNVTE 146
D H+I+G+ V+ KR R + + +TKKIFVGG+P + E
Sbjct: 66 DKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
++FR +F YG V D +M D +T R RGFGFITFD+E+AVD +L D G QVE+
Sbjct: 126 EKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK-TFHDLNGKQVEV 184
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGL +F ++F YG +TD V+M D+ T +PRGFGFIT+ VD+V+
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 106 T-HIINGKQVEIKRTIPRGA 124
T H +NGKQVE+KR +P+ A
Sbjct: 173 TFHDLNGKQVEVKRALPKDA 192
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + +HF YG++ ++ +M+++ T +PRGFGF+ ++DPSV+D+V+E
Sbjct: 6 GKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE 65
Query: 105 DTHIINGKQVEIKRTIPR------------------GAVGSKDFKTKKIFVGGIPSNVTE 146
D H+I+G+ V+ KR R + + +TKKIFVGG+P + E
Sbjct: 66 DKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
++FR +F YG V D +M D +T R RGFGFITFD+E+AVD +L D G QVE+
Sbjct: 126 EKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK-TFHDLNGKQVEV 184
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGL +F ++F YG +TD V+M D+ T +PRGFGFIT+ VD+V+
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 106 T-HIINGKQVEIKRTIPRGA 124
T H +NGKQVE+KR +P+ A
Sbjct: 173 TFHDLNGKQVEVKRALPKDA 192
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 113/181 (62%), Gaps = 20/181 (11%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
K+F+GG++RETT HF KYG++ S I DR T PRGFGF+T++D S ++
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ 69
Query: 105 DTHIINGKQVEIKRTIPRG-------------------AVGSKDFKTKKIFVGGIPSNVT 145
DTH I G++VE+++ IPR G++ +TKKIFVGG+P+N++
Sbjct: 70 DTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANMS 129
Query: 146 EDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVE 205
+EF+ +F R+G + D +M+D T+R RGFGFITFDSED+V ++ M + D G QVE
Sbjct: 130 VEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVM-MRSFHDLNGRQVE 188
Query: 206 I 206
+
Sbjct: 189 V 189
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITY-ADPSVVDKVIE 104
KIF+GGL ++ +F ++F ++G ITD V+M+D T +PRGFGFIT+ ++ SV ++
Sbjct: 118 KIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMR 177
Query: 105 DTHIINGKQVEIKRTIPR-GAVGSKDF 130
H +NG+QVE+KR +PR G GS+ F
Sbjct: 178 SFHDLNGRQVEVKRAVPREGNAGSEGF 204
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 108/161 (67%), Gaps = 16/161 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + ++F YGE+ ++VIMKDR T + RGFGF+ + DP+V D V++
Sbjct: 6 GKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQ 65
Query: 105 DTHIINGKQVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTEDEFR 150
+ H I+G+ VE K+ +PR G+ G +T+KIFVGG+ S VTE +F+
Sbjct: 66 EKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPG--RTRKIFVGGLASTVTESDFK 123
Query: 151 DFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+F ++G + D +M DH+T R RGFGFIT+DSE+AVD +L
Sbjct: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVL 164
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGLA T + F K+F ++G ITD V+M D T +PRGFGFITY VD+V+
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 106 T-HIINGKQVEIKRTIPR 122
T H +NGK VE+KR +P+
Sbjct: 167 TFHELNGKMVEVKRAVPK 184
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+F+GGI + E+ R++F+ YGEVK+ IM+D +T R+RGFGF+ F D ++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 194 GNKIDFAGTQVE 205
+ ID G VE
Sbjct: 67 KHNID--GRMVE 76
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 108/161 (67%), Gaps = 16/161 (9%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
GK+FIGG++ +T + ++F YGE+ ++VIMKDR T + RGFGF+ + DP+V D V++
Sbjct: 6 GKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQ 65
Query: 105 DTHIINGKQVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTEDEFR 150
+ H I+G+ VE K+ +PR G+ G +T+KIFVGG+ S VTE +F+
Sbjct: 66 EKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPG--RTRKIFVGGLASTVTESDFK 123
Query: 151 DFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+F ++G + D +M DH+T R RGFGFIT+DSE+AVD +L
Sbjct: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVL 164
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGLA T + F K+F ++G ITD V+M D T +PRGFGFITY VD+V+
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 106 T-HIINGKQVEIKRTIPR 122
T H +NGK VE+KR +P+
Sbjct: 167 TFHELNGKMVEVKRAVPK 184
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+F+GGI + E+ R++F+ YGEVK+ IM+D +T R+RGFGF+ F D ++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 194 GNKIDFAGTQVE 205
+ ID G VE
Sbjct: 67 KHNID--GRMVE 76
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 90/152 (59%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+ + G+ + ++ KYGE+ D ++MK+R T + RGFG++T+A +V+
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIM 165
H++ + +E+K P+ + + K +IFV IP +VTE+ FR F +YG++ D +
Sbjct: 65 EHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMP 124
Query: 166 RDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
+D + RG GFITF + ++V++L+S +++
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHEL 156
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 47/206 (22%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+IF+ + T F HF KYG+ITD + KD+ + RG GFIT+ + V+ ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 106 THIINGKQVEIKRTIPR-----------------------------GAVGSKDFK----- 131
TH + G V + R P+ A+G+
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 132 -----------TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFIT 180
+KKIFVG +P ++ R +F R+G ++D I RD RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 181 FDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +++ V D +S+ + G +V I
Sbjct: 273 F-ADEGVADRVSL-RPHEICGHEVAI 296
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 130 FKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDD 189
+ +K+ V GIP +V + +++ ++YGE++D +M++ ST RSRGFG++TF S D +
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 190 LLS 192
+LS
Sbjct: 61 VLS 63
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+G L E ++FG++G I D I +D K RGFGF+T+AD V D+V
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 106 THIINGKQVEIKRTIP 121
H I G +V I P
Sbjct: 286 PHEICGHEVAIDSATP 301
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 90/152 (59%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+ + G+ + ++ KYGE+ D ++MK+R T + RGFG++T+A +V+
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIM 165
H++ + +E+K P+ + + K +IFV IP +VTE+ FR F +YG++ D +
Sbjct: 65 EHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMP 124
Query: 166 RDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
+D + RG GFITF + ++V++L+S +++
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHEL 156
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 47/206 (22%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+IF+ + T F HF KYG+ITD + KD+ + RG GFIT+ + V+ ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 106 THIINGKQVEIKRTIPR-----------------------------GAVGSKDFK----- 131
TH + G V + R P+ A+G+
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 132 -----------TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFIT 180
+KKIFVG +P ++ R +F R+G ++D I RD RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 181 FDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +++ V D +S+ + G +V I
Sbjct: 273 F-ADEGVADRVSL-RPHEICGHEVAI 296
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 130 FKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDD 189
+ +K+ V GIP +V + +++ ++YGE++D +M++ ST RSRGFG++TF S D +
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 190 LLS 192
+LS
Sbjct: 61 VLS 63
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+G L E ++FG++G I D I +D K RGFGF+T+AD V D+V
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 106 THIINGKQVEIKRTIP 121
H I G +V I P
Sbjct: 286 PHEICGHEVAIDSATP 301
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 90/152 (59%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+ + G+ + ++ KYGE+ D ++MK+R T + RGFG++T+A +V+
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIM 165
H++ + +E+K P+ + + K +IFV IP +VTE+ FR F +YG++ D +
Sbjct: 65 EHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMP 124
Query: 166 RDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
+D + RG GFITF + ++V++L+S +++
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHEL 156
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 47/206 (22%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+IF+ + T F HF KYG+ITD + KD+ + RG GFIT+ + V+ ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 106 THIINGKQVEIKRTIPR-----------------------------GAVGSKDFK----- 131
TH + G V + R P+ A+G+
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 132 -----------TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFIT 180
+KKIFVG +P ++ R +F R+G ++D I RD RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 181 FDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +++ V D +S+ + G +V I
Sbjct: 273 F-ADEGVADRVSL-RPHEICGHEVAI 296
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 130 FKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDD 189
+ +K+ V GIP +V + +++ ++YGE++D +M++ ST RSRGFG++TF S D +
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 190 LLS 192
+LS
Sbjct: 61 VLS 63
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+G L E ++FG++G I D I +D K RGFGF+T+AD V D+V
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 106 THIINGKQVEIKRTIP 121
H I G +V I P
Sbjct: 286 PHEICGHEVAIDSATP 301
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 90/152 (59%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+ + G+ + ++ KYGE+ D ++MK+R T + RGFG++T+A +V+
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIM 165
H++ + +E+K P+ + + K +IFV IP +VTE+ FR F +YG++ D +
Sbjct: 65 EHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMP 124
Query: 166 RDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
+D + RG GFITF + ++V++L+S +++
Sbjct: 125 KDQGSKMHRGIGFITFGNAESVENLMSETHEL 156
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 47/206 (22%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+IF+ + T F HF KYG+ITD + KD+ + RG GFIT+ + V+ ++ +
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 106 THIINGKQVEIKRTIPR-----------------------------GAVGSKDFK----- 131
TH + G V + R P+ A+G+
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 132 -----------TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFIT 180
+KKIFVG +P ++ R +F R+G ++D I RD RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 181 FDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +++ V D +S+ + G +V I
Sbjct: 273 F-ADEGVADRVSL-RPHEICGHEVAI 296
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 130 FKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDD 189
+ +K+ V GIP +V + +++ ++YGE++D +M++ ST RSRGFG++TF S D +
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 190 LLS 192
+LS
Sbjct: 61 VLS 63
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+G L E ++FG++G I D I +D K RGFGF+T+AD V D+V
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 106 THIINGKQVEIKRTIP 121
H I G +V I P
Sbjct: 286 PHEICGHEVAIDSATP 301
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 14/93 (15%)
Query: 113 QVEIKRTIPR--------------GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE 158
QVE K+ +PR G+ +TKKIFVGG+ S VTE +F+++F ++G
Sbjct: 2 QVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGT 61
Query: 159 VKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
+ D +M DH+T R RGFGFIT+DSE+AV+ +L
Sbjct: 62 ITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 94
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+GGLA T + F +F ++G ITD V+M D T +PRGFGFITY V+KV+
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 106 T-HIINGKQVEIKRTIPR 122
T H +NGK VE+KR +P+
Sbjct: 97 TFHELNGKMVEVKRAVPK 114
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+G L + + + F + G + + ++ +R T + RGFGF+T + V++ +
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 106 TH--IINGKQVEIKRTIPRGAVGSKDFKT----KKIFVGGIPSNVTEDEFRDFFTRYGEV 159
++G+ + + + PRG + +T + +VG +P +V F+ +G+V
Sbjct: 183 FSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKV 242
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+ Q++ D T RSRGFGF+T +E ++D ++ + F G + +
Sbjct: 243 ESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITY--ADPSVVDKVI 103
K+F+ GL+ ETT F YG++ +++++ D+ T + +G+GF+ Y D +V+ +
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVL-ALK 135
Query: 104 EDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQ 163
E + I+G+ + + + G+ G D ++K+FVG +P V+ + F++YGE+++
Sbjct: 136 EPSKKIDGR-MTVTQLAAAGSTGG-DVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGP 193
Query: 164 IMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNK 196
+ D ++ ++RGF F + +E+ + ++ K
Sbjct: 194 LGFDKASGKTRGFAFFVYKTEEGAKNSVAESMK 226
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVI-- 103
K+FI GL +TT F YGE+ +++++ D+ T + +G+GF+T+ VD +
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLH---VDGALLA 130
Query: 104 --EDTHIINGKQVEIKRTIPRGAVGSK----DFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
E + I+G+ V + + G GS D +KI+V +P ++ D+ F+ YG
Sbjct: 131 LREPSKRIDGR-VTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAHFSIYG 189
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLS 192
E+++ + D T RS+GF + + + + +S
Sbjct: 190 EIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVS 224
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 124 AVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS 183
AV D +K+F+ G+ + T + R F+ YGE+++ ++ D +T +S+G+GF+TF
Sbjct: 64 AVVDPDISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLH 123
Query: 184 ED-AVDDLLSMGNKID 198
D A+ L +ID
Sbjct: 124 VDGALLALREPSKRID 139
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 30/182 (16%)
Query: 36 PLTGDGASP--------GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRG 87
P +G GASP K+F+G + R T F ++G + + ++KDRKT Q +G
Sbjct: 71 PFSGRGASPDHSDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQG 130
Query: 88 FGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTK------------KI 135
FI YA D+ I H + T+P G VG + K+
Sbjct: 131 CCFIKYATSEEADQAIRALH--------NRHTLP-GGVGPIQVRYADGERERLGAVEYKL 181
Query: 136 FVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGN 195
FVG + + E + F++YG ++D +MRD +SRG GF+ + D ++ N
Sbjct: 182 FVGSLNKQASVKEVEEVFSKYGRIEDVYLMRD-DQKQSRGCGFVKYSHRDMALAAINALN 240
Query: 196 KI 197
I
Sbjct: 241 GI 242
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 18/170 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+G + + T + + F ++ + + I+KD+ T RG F+ DK +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 106 THIINGKQVEIKRTIP--------RGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
H K+T+P + A G + K+F+G +P N++E E F++YG
Sbjct: 77 CHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYG 128
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKIDFAGTQVEI 206
+KD QI+R S S+G F+ +++ E A+ L ++ K G+ V +
Sbjct: 129 TIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 177
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 18/170 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+G + + T + + F ++ + + I+KD+ T RG F+ DK +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 106 THIINGKQVEIKRTIP--------RGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
H K+T+P + A G + K+F+G +P N++E E F++YG
Sbjct: 77 CHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYG 128
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKIDFAGTQVEI 206
+KD QI+R S S+G F+ +++ E A+ L ++ K G+ V +
Sbjct: 129 TIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 177
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+G + + T + + F ++ + + I+KD+ T RG F+ DK +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 106 THIINGKQVEIKRTIP--------RGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
H K+T+P + A G + K+F+G +P N++E E F++YG
Sbjct: 77 CHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYG 128
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKIDFAGTQVEI 206
+KD QI+R G F+ +++ E A+ L ++ K G+ V +
Sbjct: 129 TIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 178
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 25/192 (13%)
Query: 33 NSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFIT 92
+S+ T D + K+++G + R + + K ++G + + +M D+ + + R F F+T
Sbjct: 48 SSEQATVDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVT 107
Query: 93 YADPSVVDKVIEDTHI----INGKQV---EIKRTIPRGAVGSKDFKTK-----------K 134
K +ED + +NG ++ EIK I + ++ + K
Sbjct: 108 M-------KTVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYK 160
Query: 135 IFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMG 194
++VG + NVT D + FF+ G ++ R T++S GFGF+TF S++ V+ +S
Sbjct: 161 VYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSF 220
Query: 195 NKIDFAGTQVEI 206
N G ++ +
Sbjct: 221 NNALLEGQKIRV 232
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 12 GGESNDVARTYSHREDHDQHHN--SQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYG 69
G E +++ E+ ++H S+P G ++FIGGL R+T+ + G
Sbjct: 74 GAEEDELKPALIDEEEREKHDELLSRPPHG-----SEVFIGGLPRDTSDDDVRELCEPMG 128
Query: 70 EITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKD 129
+I + ++KDR+T + +G+ F+ Y V K I+D H E K R +
Sbjct: 129 DIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIH-----NKEFKGKTLRCLLS--- 180
Query: 130 FKTK-KIFVGGIPSNVTEDEFRDFFTRYGE-VKDNQIMRD-HSTNRSRGFGFITFDSEDA 186
+TK ++F+G IP TEDEFR G V+ +++D + +R+RGF F+ + +
Sbjct: 181 -ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNAC 239
Query: 187 VD----DLLSMGNKID 198
D + S+G K+D
Sbjct: 240 ADFSRQKMSSVGFKLD 255
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVDKVI 103
++FIG + + T +F K G +S+ ++KD + ++ RGF F+ Y + + D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 104 EDTHIINGKQVEIKRTI----PRGAV--GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
+ + K I T+ P+ + + + K ++V IP NVT ++ ++ F R+G
Sbjct: 245 QKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHG 304
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
EV +M + R FGFI + + + K + G +E+
Sbjct: 305 EVT-KVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEV 352
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 12 GGESNDVARTYSHREDHDQHHN--SQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYG 69
G E +++ E+ ++H S+P G ++FIGGL R+T+ + G
Sbjct: 74 GAEEDELKPALIDEEEREKHDELLSRPPHG-----SEVFIGGLPRDTSDDDVRELCEPMG 128
Query: 70 EITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKD 129
+I + ++KDR+T + +G+ F+ Y V K I+D H E K R +
Sbjct: 129 DIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIH-----NKEFKGKTLRCLLS--- 180
Query: 130 FKTK-KIFVGGIPSNVTEDEFRDFFTRYGE-VKDNQIMRD-HSTNRSRGFGFITFDSEDA 186
+TK ++F+G IP TEDEFR G V+ +++D + +R+RGF F+ + +
Sbjct: 181 -ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNAC 239
Query: 187 VD----DLLSMGNKID 198
D + S+G K+D
Sbjct: 240 ADFSRQKMSSVGFKLD 255
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVDKVI 103
++FIG + + T +F K G +S+ ++KD + ++ RGF F+ Y + + D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 104 EDTHIINGKQVEIKRTI----PRGAV--GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
+ + K I T+ P+ + + + K ++V IP NVT ++ ++ F R+G
Sbjct: 245 QKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHG 304
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
EV +M + R FGFI + + + K + G +E+
Sbjct: 305 EVT-KVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEV 352
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 12 GGESNDVARTYSHREDHDQHHN--SQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYG 69
G E +++ E+ ++H S+P G ++FIGGL R+T+ + G
Sbjct: 74 GAEEDELKPALIDEEEREKHDELLSRPPHG-----SEVFIGGLPRDTSDDDVRELCEPMG 128
Query: 70 EITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKD 129
+I + ++KDR+T + +G+ F+ Y V K I+D H E K R +
Sbjct: 129 DIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIH-----NKEFKGKTLRCLLS--- 180
Query: 130 FKTK-KIFVGGIPSNVTEDEFRDFFTRYGE-VKDNQIMRD-HSTNRSRGFGFITFDSEDA 186
+TK ++F+G IP TEDEFR G V+ +++D + +R+RGF F+ + +
Sbjct: 181 -ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNAC 239
Query: 187 VD----DLLSMGNKID 198
D + S+G K+D
Sbjct: 240 ADFSRQKMSSVGFKLD 255
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVDKVI 103
++FIG + + T +F K G +S+ ++KD + ++ RGF F+ Y + + D
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 104 EDTHIINGKQVEIKRTI----PRGAV--GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
+ + K I T+ P+ + + + K ++V IP NVT ++ ++ F R+G
Sbjct: 245 QKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHG 304
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
EV +M + R FGFI + + + K + G +E+
Sbjct: 305 EVT-KVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEV 352
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL + T F KYGEI D + D+ + + +G+ FI + + + ++
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 106 THIINGKQVEIKRTIPRGAVGSK--------DFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
+ G + + G V + ++ +KIFV + S++ + +FF ++G
Sbjct: 226 PQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFG 285
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
EV D + D +T + +GF + + ++ L NK+
Sbjct: 286 EVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV 325
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL + T F KYGEI D + D+ + + +G+ FI + + + ++
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 106 THIINGKQVEIKRTIPRGAVGSK--------DFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
+ G + + G V + ++ +KIFV + S++ + +FF ++G
Sbjct: 226 PQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFG 285
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
EV D + D +T + +GF + + ++ L NK+
Sbjct: 286 EVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV 325
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
KIF+ GL + T F KYGEI D + D+ + + +G+ FI + + + ++
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 106 THIINGKQVEIKRTIPRGAVGSK--------DFKTKKIFVGGIPSNVTEDEFRDFFTRYG 157
+ G + + G V + ++ +KIFV + S++ + +FF ++G
Sbjct: 226 PQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFG 285
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
EV D + D +T + +GF + + ++ L NK+
Sbjct: 286 EVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV 325
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 48 FIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDTH 107
++G L + + + F + G + + + KDR T Q +G+GF+ + D I+ +
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 108 IIN--GKQVEIKRTIPRGAVGSKDFKT----KKIFVGGIPSNVTEDEFRDFFTRYGEVKD 161
+I GK + + + S+D K+ +F+G + +V E D F+ +G +
Sbjct: 88 MIKLYGKPIRVNK-------ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 162 N-QIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
N +IMRD T SRGFGFI++DS +A D + N Q+ +
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 186
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
K+F+G + + FG+ G + + ++ +R+T RGFGF+T + + +E
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 105 --DTHIINGKQVEIKRTIPRGAVGSKDFKTKK-------IFVGGIPSNVTEDEFRDFFTR 155
+ + NG+ + + + P+G+ + + + I+V + V F+
Sbjct: 169 KFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSE 228
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLS 192
+G++ +++ D T RSRGFGF+T E ++D ++
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIA 265
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
K+F+G + + FG+ G + + ++ +R+T RGFGF+T + + +E
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 105 --DTHIINGKQVEIKRTIPRGAVGSKDFKTKK-------IFVGGIPSNVTEDEFRDFFTR 155
+ + NG+ + + + P+G+ + + + I+V + V F+
Sbjct: 169 KFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSE 228
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLS 192
+G++ +++ D T RSRGFGF+T E ++D ++
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIA 265
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 132 TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLL 191
T K+F+GG+ + E+ R+ F+RYGEV D +I+ D T RSRGFGFITF+S + +
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 192 SMGNKIDFAGTQVEI 206
+ D G +V +
Sbjct: 101 QALDGQDLHGRRVRV 115
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
K+FIGG++ T + F +YGE+ D+ I+ DR+T + RGFGFIT+ I+
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 105 -DTHIINGKQVEIK 117
D ++G++V +
Sbjct: 103 LDGQDLHGRRVRVN 116
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 38 TGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPS 97
TGD A +F+ L+ TT + K FG++G IT +V+M+D + + FGF+ +
Sbjct: 206 TGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFES-- 262
Query: 98 VVDKVIEDTHIINGKQV------------------EIKRTIPRGAVGSKD-FKTKKIFVG 138
D +NGK++ E+K + + D ++ ++V
Sbjct: 263 -TDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVK 321
Query: 139 GIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKI 197
+ ++ +++ ++ F+ YG + ++MRD SRG GF+ F + E+A LL M K+
Sbjct: 322 NLDDSIADEKLKELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRALLEMNGKM 380
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 15/167 (8%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++G L T +Q F + G++ + +D T + G+G++ Y++P + ++
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 107 HI--INGKQVEIKRTIPRGAVGSKDFKTKK-----IFVGGIPSNVTEDEFRDFFTRYGEV 159
+ +N + + I + +D +K IF+ + + D F+ +G +
Sbjct: 96 NFTPLNNRPIRIMYS-------HRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNI 148
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
++ D S +S+G+GF+ FD+E+A + N + QV +
Sbjct: 149 LSCKVAVDGS-GQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 128 KDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
+ + K+F+GG+ NV + RD FT YG+V + +++ D T RSRGFGF+ F SE++
Sbjct: 31 RHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESA 90
Query: 188 DDLLSMGNKI 197
LSM ++
Sbjct: 91 TSALSMDGQV 100
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 128 KDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
+ + K+F+GG+ NV + RD FT YG+V + +++ D T RSRGFGF+ F SE++
Sbjct: 31 RHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESA 90
Query: 188 DDLLSMGNKIDFAGTQVEI 206
LSM + D G + +
Sbjct: 91 TSALSMDGQ-DLNGRNIRV 108
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 42 ASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK 101
AS KIF+ GL +TT A I F +YGEI D + D+ + + +G+GFI + S
Sbjct: 124 ASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARN 183
Query: 102 VIEDTHIINGKQVEIKRTIPRGAVGS---------------KDFKTKKIFVGGIPSNVTE 146
+++ G ++ + G V ++ +KI++ + +
Sbjct: 184 ALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDA 243
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAG 201
+ FF+R+GE+++ + D T + +GF + S ++ L +K +F G
Sbjct: 244 QKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHK-EFEG 297
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 42 ASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK 101
AS KIF+ GL +TT A I F +YGEI D + D+ + + +G+GFI + S
Sbjct: 124 ASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARN 183
Query: 102 VIEDTHIINGKQVEIKRTIPRGAVGS---------------KDFKTKKIFVGGIPSNVTE 146
+++ G ++ + G V ++ +KI++ + +
Sbjct: 184 ALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDA 243
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAG 201
+ FF+R+GE+++ + D T + +GF + S ++ L +K +F G
Sbjct: 244 QKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHK-EFEG 297
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 42 ASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK 101
AS KIF+ GL +TT A I F +YGEI D + D+ + + +G+GFI + S
Sbjct: 124 ASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARN 183
Query: 102 VIEDTHIINGKQVEIKRTIPRGAVGS---------------KDFKTKKIFVGGIPSNVTE 146
+++ G ++ + G V ++ +KI++ + +
Sbjct: 184 ALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDA 243
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAG 201
+ FF+R+GE+++ + D T + +GF + S ++ L +K +F G
Sbjct: 244 QKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHK-EFEG 297
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 42 ASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK 101
AS KIF+ GL +TT A I F +YGEI D + D+ + + +G+GFI + S
Sbjct: 124 ASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARN 183
Query: 102 VIEDTHIINGKQVEIKRTIPRGAVGS---------------KDFKTKKIFVGGIPSNVTE 146
+++ G ++ + G V ++ +KI++ + +
Sbjct: 184 ALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDA 243
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAG 201
+ FF+R+GE+++ + D T + +GF + S ++ L +K +F G
Sbjct: 244 QKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHK-EFEG 297
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 42 ASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK 101
AS KIF+ GL +TT A I F +YGEI D + D+ + + +G+GFI + S
Sbjct: 124 ASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARN 183
Query: 102 VIEDTHIINGKQVEIKRTIPRGAVGS---------------KDFKTKKIFVGGIPSNVTE 146
+++ G ++ + G V ++ +KI++ + +
Sbjct: 184 ALKEPQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDA 243
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAG 201
+ FF+R+GE+++ + D T + +GF + S ++ L +K +F G
Sbjct: 244 QKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHK-EFEG 297
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 128 KDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSEDA 186
+ + K+F+GG+ + E R+ F+RYG+V D +I+ D T RSRGFGFITF SE+A
Sbjct: 35 RSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEA 94
Query: 187 VDDLLSMGNK 196
L +M NK
Sbjct: 95 SSALQAMDNK 104
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 43 SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKV 102
S K+FIGG++ T + F +YG++ D+ I+ DR T + RGFGFIT+A
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSA 97
Query: 103 IE--DTHIINGKQVEIKRTIPRGAVG 126
++ D ++G+ V + R G
Sbjct: 98 LQAMDNKELDGRTVRVNYATERARPG 123
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 128 KDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSEDA 186
+ + K+F+GG+ + E R+ F+RYG+V D +I+ D T RSRGFGFITF SE+A
Sbjct: 35 RSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEA 94
Query: 187 VDDLLSMGNK 196
L +M NK
Sbjct: 95 SSALQAMDNK 104
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 43 SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKV 102
S K+FIGG++ T + F +YG++ D+ I+ DR T + RGFGFIT+A
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSA 97
Query: 103 IE--DTHIINGKQVEIKRTIPRGAVG 126
++ D ++G+ V + R G
Sbjct: 98 LQAMDNKELDGRTVRVNYATERARPG 123
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+F + + T + F K G++ D ++ DR + + +G G+I + D V I +
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALS 276
Query: 107 -HIINGKQVEIK-------------RTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDF 152
++ G+ V +K T G VG +K++VG + N+TE + R+
Sbjct: 277 GQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREI 336
Query: 153 FTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +G V+ Q+ D T +GFGFI F + S+ K++ AG +++
Sbjct: 337 FEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+F + + T + F K G++ D ++ DR + + +G G+I + D V I +
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALS 276
Query: 107 -HIINGKQVEIK-------------RTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDF 152
++ G+ V +K T G VG +K++VG + N+TE + R+
Sbjct: 277 GQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREI 336
Query: 153 FTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +G V+ Q+ D T +GFGFI F + S+ K++ AG +++
Sbjct: 337 FEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+F + + T + F K G++ D ++ DR + + +G G+I + D V I +
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALS 276
Query: 107 -HIINGKQVEIK-------------RTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDF 152
++ G+ V +K T G VG +K++VG + N+TE + R+
Sbjct: 277 GQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREI 336
Query: 153 FTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
F +G V+ Q+ D T +GFGFI F + S+ K++ AG +++
Sbjct: 337 FEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 29 DQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGF 88
D+ N +P +F + + T + F K G++ D ++ DR + + +G
Sbjct: 186 DKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 245
Query: 89 GFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPR------------GAVGSKDFKTKKI 135
G+I + D V I + ++ G+ V +K + VG +K+
Sbjct: 246 GYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKL 305
Query: 136 FVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGN 195
+VG + N+TE R+ F +G+++ Q+ D T +GFGF+ F + S+
Sbjct: 306 YVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNG 365
Query: 196 KIDFAGTQVEI 206
K++ AG +++
Sbjct: 366 KLEIAGRTIKV 376
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 42 ASPGK-IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVD 100
ASP +++G L + T AQ K F ++ + + + KD T + +G++ +
Sbjct: 11 ASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAI 70
Query: 101 KVIE--DTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE 158
+ IE + +NGK + + + R A K K +FV + +++ D F +YG
Sbjct: 71 RAIELKNHSSLNGKVIRV-MWLSRDADARKSGKGN-VFVKNLAASIDNVGLHDLFQKYGN 128
Query: 159 VKDNQIMRDHSTNRSRGFGFITFDSEDAVD 188
+ ++I R +S+GFG+I FDSE++ +
Sbjct: 129 ILSSKIARSED-GKSKGFGYIQFDSEESAN 157
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++ L T + F +G+I I KD + Q +GFGF+ Y P + +E
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAME-- 252
Query: 107 HIINGKQ--------VEIKRTIPRGAVGSKDFKTK-------KIFVGGIPSNVTEDEFRD 151
++G Q ++ + R + F K I+V I ++V ++E RD
Sbjct: 253 -AMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRD 311
Query: 152 FFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS 183
F+ GEV ++MRD S+GFGF+ F +
Sbjct: 312 HFSACGEVLSAKVMRD-DKGTSKGFGFVCFST 342
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
G +F+ LA F KYG I S I + + + +GFG+I + + I+
Sbjct: 103 GNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQ 161
Query: 105 DTH--IINGKQVEIKRTIPRGAVGSKDFKTK--KIFVGGIPSNVTEDEFRDFFTRYGEVK 160
+ + KQ+ + + I + D K ++V + VTE + F+ +G++
Sbjct: 162 KMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIV 221
Query: 161 DNQIMRDHSTNRSRGFGFITFDSED 185
I +D + +S+GFGF+ +DS D
Sbjct: 222 SLAIKKDEN-GQSKGFGFVNYDSPD 245
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
++F+G L AQ + F G++ ++ D+ T + RGFGF+T + + V+ +
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 105 -DTHIINGKQVEIK-------------------------RTIPRGAVGSKDFKTKKIFVG 138
+ ++++G+++ + R PRG GS D ++ VG
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRG--GSSD-GDNRVHVG 201
Query: 139 GIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKID 198
+ V F G+V + +++ D + RSRGFGF+TF S D VD + + D
Sbjct: 202 NLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGAD 261
Query: 199 FAGTQVEI 206
G + +
Sbjct: 262 LNGRAIRV 269
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE- 104
++F+G L AQ + F G++ ++ D+ T + RGFGF+T + + V+ +
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 105 -DTHIINGKQVEIK-------------------------RTIPRGAVGSKDFKTKKIFVG 138
+ ++++G+++ + R PRG GS D ++ VG
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRG--GSSD-GDNRVHVG 201
Query: 139 GIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKID 198
+ V F G+V + +++ D + RSRGFGF+TF S D VD + + D
Sbjct: 202 NLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGAD 261
Query: 199 FAGTQVEI 206
G + +
Sbjct: 262 LNGRAIRV 269
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
++IG L F GE+ I++++ T QP G+GFI + S ++V++
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ-- 74
Query: 107 HIINGKQVEIKRTIPRGAVGSKDFKTKK--------IFVGGIPSNVTEDEFRDFF-TRYG 157
NG Q+ R S ++ IFVG + +VT+ ++ F T YG
Sbjct: 75 -TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYG 133
Query: 158 EVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
V+ +++ D +T RS+G+GF+ F E + +S N +
Sbjct: 134 SVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGV 173
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET +HF KYG+I ++VI+ D+ T + +G+GF+T+ D K E+
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 106 -THIINGKQVEI 116
T IING++
Sbjct: 79 PTVIINGRRANC 90
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDA 186
D K+FVGG+ +D R+ F +YG++ + I+ D T RS+G+GF+TF D+
Sbjct: 14 DTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADS 71
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET +HF KYG+I ++VI+ D+ T + +G+GF+T+ D K E+
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 106 -THIINGKQVEI 116
T IING++
Sbjct: 79 PTVIINGRRANC 90
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDA 186
D K+FVGG+ +D R+ F +YG++ + I+ D T RS+G+GF+TF D+
Sbjct: 14 DTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADS 71
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+ F+GGLA T + F K+GEITDS ++ DR+T + RGFGF+T+A+ + IE+
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 106 THIINGKQVE 115
+NG+ ++
Sbjct: 69 ---MNGQDID 75
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 125 VGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+GS D + + FVGG+ F+++GE+ D++++ D T RSRGFGF+TF E
Sbjct: 1 MGSSDVEYR-CFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEE 59
Query: 185 DAVDDLLSMGNKIDFAGTQVEI 206
++ D + N D G + +
Sbjct: 60 KSMRDAIEEMNGQDIDGRNITV 81
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
+ F+GGLA T K F +YGEI DS I+ DR+T + RGFGF+T+AD + IE
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIE 67
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ + F++YGE+ D++I+ D T RSRGFGF+TF E ++ D +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 194 GNKIDFAGTQVEI 206
N D G + +
Sbjct: 69 MNGQDMDGRNITV 81
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++F+G L + +Q + FG+ G + I+ D T + RGF F+T + V+ E
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGN---VEDAEEA 165
Query: 106 THIINGKQV---EIKRTIPRGAVGSKDFKT-----------KKIFVGGIPSNVTEDEFRD 151
+ +G V IK P + K + KI+ G + ++T R
Sbjct: 166 IRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 152 FFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
F + + +++ + + +SRG+GF++F++ + V+ LS N ++ G + +
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRL 280
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++F+G L + +Q + FG+ G + I+ D T + RGF F+T + V+ E
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGN---VEDAEEA 165
Query: 106 THIINGKQV---EIKRTIPRGAVGSKDFKT-----------KKIFVGGIPSNVTEDEFRD 151
+ +G V IK P + K + KI+ G + ++T R
Sbjct: 166 IRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 152 FFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
F + + +++ + + +SRG+GF++F++ + V+ LS N ++ G + +
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRL 280
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+ F+GGLA T K F +YGEI DS I+ DR+T + RGFGF+T+A+ ++ IE
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIE- 65
Query: 106 THIINGKQVE 115
+NG+ ++
Sbjct: 66 --AMNGQDLD 73
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ + F++YGE+ D++I+ D T RSRGFGF+TF +E +++D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 194 GNKIDFAGTQVEI 206
N D G + +
Sbjct: 67 MNGQDLDGRNITV 79
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
+ F+GGLA T K F +YGEI DS I+ DR+T + RGFGF+T+A+ ++ IE
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIE- 65
Query: 106 THIINGKQVE 115
+NG+ ++
Sbjct: 66 --AMNGQDLD 73
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+ FVGG+ + F++YGE+ D++I+ D T RSRGFGF+TF +E +++D +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 194 GNKIDFAGTQVEI 206
N D G + +
Sbjct: 67 MNGQDLDGRNITV 79
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K++ G L A +YG ++ DR T + RGF F+T + + VI++
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 106 THIINGKQVEIKRTI-------PRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE 158
++GK+ + RT+ P+ K+FVG + VT + F +G
Sbjct: 174 ---LDGKEF-MGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGT 229
Query: 159 VKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
V +++ D T +SRG+GF+++ ++ +D L++ + ++ G + +
Sbjct: 230 VVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRV 277
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 35 QPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYA 94
QP + D ++IG L FG GE+T ++++++T+Q G+GFI +
Sbjct: 52 QPASADEVR--TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFN 109
Query: 95 DPSVVDKVIED---THIINGKQ--VEIKRTIPRGAVGSK--DFKTKKIFVGGIPSNVTED 147
+ ++V++ T + NG Q T G S+ D IFVG + ++VT+
Sbjct: 110 TRATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDY 169
Query: 148 EFRDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
++ F RY VK +++ D T RS+G+GF+ F E
Sbjct: 170 LLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADE 207
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE 104
G++++G L T +Q F + G + I+ DR T + RGF F+T ++ E
Sbjct: 109 GRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKS---AEEAKE 165
Query: 105 DTHIINGKQV----------EIKRTIPRGAVGSKDFKT--------KKIFVGGIPSNVTE 146
+ +G QV E+ + R +G K + KI+ G + +
Sbjct: 166 AIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNS 225
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+ RD F + +I+ + RSRGFGF+TF++ + ++ L+ N ++ G + +
Sbjct: 226 QDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRL 285
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 132 TKKIFVGGI--------PSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS 183
T K+F+GGI + E+ R+ F+RYGEV D +I+ D T RSRGFGFITF+S
Sbjct: 41 TTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS 100
Query: 184 EDAVDDLLSMGNKIDFAGTQVEI 206
+ + + D G +V +
Sbjct: 101 VEEASSAIQALDGQDLHGRRVRV 123
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 12/159 (7%)
Query: 35 QPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYA 94
QP + D ++IG L FG GE+T ++++++T+Q G+GFI +
Sbjct: 52 QPASADEVR--TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFN 109
Query: 95 DPSVVDKVIED---THIINGKQVEIKRTIPRGAVGSKDFKT-----KKIFVGGIPSNVTE 146
+ ++V++ T + NG Q + + G + + IFVG + ++VT+
Sbjct: 110 TRATAERVLQTYNGTIMPNGGQ-NYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 147 DEFRDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
++ F RY VK +++ D T RS+G+GF+ F E
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADE 207
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 12/159 (7%)
Query: 35 QPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYA 94
QP + D ++IG L FG GE+T ++++++T+Q G+GFI +
Sbjct: 52 QPASADEVR--TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFN 109
Query: 95 DPSVVDKVIED---THIINGKQVEIKRTIPRGAVGSKDFKT-----KKIFVGGIPSNVTE 146
+ ++V++ T + NG Q + + G + + IFVG + ++VT+
Sbjct: 110 TRATAERVLQTYNGTIMPNGGQ-NYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 147 DEFRDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
++ F RY VK +++ D T RS+G+GF+ F E
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADE 207
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET + +F ++G+I ++VI+ D+ T + +G+GF+T+ DP + D
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 106 TH-IINGKQVEI 116
+ +I+G++
Sbjct: 77 PNPVIDGRRANC 88
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSEDA 186
K+FVGG+ DE R +F ++G++ + I+ D +T +S+G+GF+TF D E A
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESA 70
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+FVGGI N E D F++YG+V D +I+ D + RS+GFGF+T+++ + +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 194 GNKIDFAGTQVEI 206
+ D G +V +
Sbjct: 105 LDGQDLYGRRVGV 117
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GG++ T F KYG++ D+ I+ DR++ + +GFGF+TY + V++
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTY---NTVEEASSA 101
Query: 106 THIINGKQVEIKR 118
++G+ + +R
Sbjct: 102 IQALDGQDLYGRR 114
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+FVGGI N E D F++YG+V D +I+ D + RS+GFGF+T+++ + +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 194 GNKIDFAGTQVEI 206
+ D G +V +
Sbjct: 105 LDGQDLYGRRVGV 117
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GG++ T F KYG++ D+ I+ DR++ + +GFGF+TY + V++
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTY---NTVEEASSA 101
Query: 106 THIINGKQVEIKR 118
++G+ + +R
Sbjct: 102 IQALDGQDLYGRR 114
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 12/159 (7%)
Query: 35 QPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYA 94
QP + D ++IG L FG GE+T ++++++T+Q G+GFI +
Sbjct: 52 QPASADEVR--TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFN 109
Query: 95 DPSVVDKVIED---THIINGKQVEIKRTIPRGAVGSKDFKT-----KKIFVGGIPSNVTE 146
+ ++V++ T + NG Q + + G + + IFVG + ++VT+
Sbjct: 110 TRATAERVLQTYNGTIMPNGGQ-NYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 147 DEFRDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
++ F RY VK +++ D T RS+G+GF+ F E
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADE 207
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADP-SVVDKVIE 104
K+F+GGLA ET K+F ++GEI ++V++ D+ T + +G+GF+T+ +P + + ++
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 105 DTHIINGKQVEI 116
II+G++
Sbjct: 77 AAPIIDGRRANC 88
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
D K+FVGG+ ++ + +F ++GE+ + ++ D +T RS+G+GF+TF DA
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAA 70
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADP-SVVDKVIE 104
K+F+GGLA ET K+F ++GEI ++V++ D+ T + +G+GF+T+ +P + + ++
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 105 DTHIINGKQVEI 116
II+G++
Sbjct: 77 AAPIIDGRRANC 88
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 129 DFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
D K+FVGG+ ++ + +F ++GE+ + ++ D +T RS+G+GF+TF DA
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAA 70
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 118 RTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFG 177
RT+P+ + + + K+F+ G+ N E RD F ++G++ + +++ +H T S+G+G
Sbjct: 18 RTLPQLLLCVRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYG 77
Query: 178 FITFDSEDA 186
F+ F+SE A
Sbjct: 78 FVRFNSETA 86
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++F+GGL ++ T K F + G +T+ +M + +T + +GF F+ + + + + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 106 TH--IINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG--EVKD 161
+INGKQ G S+D T +++G I T++ ++ YG V+D
Sbjct: 275 LKNPVINGKQC--------GVTPSQDSDT--LYLGNICKTWTKEALKEKLKHYGVTNVED 324
Query: 162 NQIMRDHSTN-RSRGFGFITFDSE-DAVD 188
++ D + +RGF F+ F S DA+D
Sbjct: 325 ITLVEDSNDKGTNRGFAFLEFSSRSDAMD 353
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 47 IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRK-TAQPRGFGFITYADPS-VVD- 100
+++G + + T + + +KH+G + D +++D RGF F+ ++ S +D
Sbjct: 296 LYLGNICKTWTKEALKEKLKHYG-VTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDA 354
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAVGSKD---FKTKKIFVGGIPSNVTEDEFRDFFTRY 156
K ++ + G K + + D + K +F+ +P + ED R+ +Y
Sbjct: 355 FKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKY 414
Query: 157 GEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
GEV+ ++ R+ R + +GF+TF S DA
Sbjct: 415 GEVEKIELARNMPAARRKDYGFVTFGSHDAA 445
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++F+GGL ++ T K F + G +T+ +M + +T + +GF F+ + + + + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 106 TH--IINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG--EVKD 161
+INGKQ G S+D T +++G I T++ ++ YG V+D
Sbjct: 275 LKNPVINGKQC--------GVTPSQDSDT--LYLGNICKTWTKEALKEKLKHYGVTNVED 324
Query: 162 NQIMRDHSTN-RSRGFGFITFDSE-DAVD 188
++ D + +RGF F+ F S DA+D
Sbjct: 325 ITLVEDSNDKGTNRGFAFLEFSSRSDAMD 353
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 47 IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRK-TAQPRGFGFITYADPS-VVD- 100
+++G + + T + + +KH+G + D +++D RGF F+ ++ S +D
Sbjct: 296 LYLGNICKTWTKEALKEKLKHYG-VTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDA 354
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAVGSKD---FKTKKIFVGGIPSNVTEDEFRDFFTRY 156
K ++ + G K + + D + K +F+ +P + ED R+ +Y
Sbjct: 355 FKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKY 414
Query: 157 GEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
GEV+ ++ R+ R + +GF+TF S DA
Sbjct: 415 GEVEKIELARNMPAARRKDYGFVTFGSHDAA 445
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++F+GGL ++ T K F + G +T+ +M + +T + +GF F+ + + + + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 106 TH--IINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG--EVKD 161
+INGKQ G S+D T +++G I T++ ++ YG V+D
Sbjct: 276 LKNPVINGKQC--------GVTPSQDSDT--LYLGNICKTWTKEALKEKLKHYGVTNVED 325
Query: 162 NQIMRDHSTN-RSRGFGFITFDSE-DAVD 188
++ D + +RGF F+ F S DA+D
Sbjct: 326 ITLVEDSNDKGTNRGFAFLEFSSRSDAMD 354
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 47 IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRK-TAQPRGFGFITYADPS-VVD- 100
+++G + + T + + +KH+G + D +++D RGF F+ ++ S +D
Sbjct: 297 LYLGNICKTWTKEALKEKLKHYG-VTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDA 355
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAVGSKD---FKTKKIFVGGIPSNVTEDEFRDFFTRY 156
K ++ + G K + + D + K +F+ +P + ED R+ +Y
Sbjct: 356 FKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKY 415
Query: 157 GEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
GEV+ ++ R+ R + +GF+TF S DA
Sbjct: 416 GEVEKIELARNMPAARRKDYGFVTFGSHDAA 446
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++F+GGL ++ T K F + G +T+ +M + +T + +GF F+ + + + + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 106 TH--IINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYG--EVKD 161
+INGKQ G S+D T +++G I T++ ++ YG V+D
Sbjct: 276 LKNPVINGKQC--------GVTPSQDSDT--LYLGNICKTWTKEALKEKLKHYGVTNVED 325
Query: 162 NQIMRDHSTN-RSRGFGFITFDSE-DAVD 188
++ D + +RGF F+ F S DA+D
Sbjct: 326 ITLVEDSNDKGTNRGFAFLEFSSRSDAMD 354
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 47 IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRK-TAQPRGFGFITYADPS-VVD- 100
+++G + + T + + +KH+G + D +++D RGF F+ ++ S +D
Sbjct: 297 LYLGNICKTWTKEALKEKLKHYG-VTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDA 355
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAVGSKD---FKTKKIFVGGIPSNVTEDEFRDFFTRY 156
K ++ + G K + + D + K +F+ +P + ED R+ +Y
Sbjct: 356 FKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKY 415
Query: 157 GEVKDNQIMRDHSTNRSRGFGFITFDSEDAV 187
GEV+ ++ R+ R + +GF+TF S DA
Sbjct: 416 GEVEKIELARNMPAARRKDYGFVTFGSHDAA 446
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 47 IFIGGLARETTIAQFIKHFGK-YGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
IF+G LA + T + + F Y + + ++ D T + +G+GF+ + D S + +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 106 TH--IINGKQVEIKRTIPRGAVGSK--------------DFKTKKIFVGGIPSNVTEDEF 149
+ + + + I PR + G + D IFVGG+ SNVT+++
Sbjct: 252 MNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDL 311
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGN 195
+ F++YGE+ +I +G GF+ F + + ++ L N
Sbjct: 312 KQTFSQYGEIASVKI------PVGKGCGFVQFANRNNAEEALQKLN 351
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 6/157 (3%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED- 105
++IG L + + F GEIT +++++ + G+GF + + +KV+++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 106 --THIINGKQV--EIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFF-TRYGEVK 160
+ N Q T G GS + IFVG + ++VT+ + F + Y VK
Sbjct: 159 AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVK 218
Query: 161 DNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
+++ D +T RS+G+GF+ F E ++ N +
Sbjct: 219 AAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGV 255
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET ++F ++G+I ++V++ D+ T + +G+GF+T+ DP + D
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 106 -THIINGKQVEI 116
+ +I+G++
Sbjct: 90 PSPVIDGRRANC 101
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET ++F ++G+I ++V++ D+ T + +G+GF+T+ DP + D
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 106 -THIINGKQVEI 116
+ +I+G++
Sbjct: 90 PSPVIDGRRANC 101
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 15/166 (9%)
Query: 33 NSQPLTGDGASPGK-------IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQP 85
N+QP P ++IG L F GE+ ++++++T Q
Sbjct: 55 NAQPPQQSAVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQS 114
Query: 86 RGFGFITYADPSVVDKVIED---THIINGKQVEIKRTIPRGAVGSK---DFKTKKIFVGG 139
G+GF+ + + ++V++ T + NG Q + + G K D IFVG
Sbjct: 115 EGYGFLEFISRAGAERVLQTFNGTIMPNGGQ-NFRLNWATFSSGEKRHDDSPDYTIFVGD 173
Query: 140 IPSNVTEDEFRDFF-TRYGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+ ++V++ + F TRY VK +++ D +T R++G+GF+ F E
Sbjct: 174 LAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADE 219
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVD--- 100
++FIG + +E T+ K K G SV ++KD + +++ RGF FI Y + + +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
K+ ++ + PR + S + K ++V +P N+T++ ++ F +G++
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKI 298
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+ + +GF+ F + L K + G +E
Sbjct: 299 TKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLEC 345
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVD--- 100
++FIG + +E T+ K K G SV ++KD + +++ RGF FI Y + + +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
K+ ++ + PR + S + K ++V +P N+T++ ++ F +G++
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKI 298
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+ + +GF+ F + L K + G +E
Sbjct: 299 TKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLEC 345
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVD--- 100
++FIG + +E T+ K K G SV ++KD + +++ RGF FI Y + + +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
K+ ++ + PR + S + K ++V +P N+T++ ++ F +G++
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKI 298
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+ + +GF+ F + L K + G +E
Sbjct: 299 TKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLEC 345
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTAQPRGFGFITYADPSVVD--- 100
++FIG + +E T+ K K G SV ++KD + +++ RGF FI Y + + +
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 101 -KVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
K+ ++ + PR + S + K ++V +P N+T++ ++ F +G++
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKI 298
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
+ + +GF+ F + L K + G +E
Sbjct: 299 TKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLEC 345
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPS-- 97
D ++ +++G + + + + F G + +++ K++ +GF+ Y D S
Sbjct: 41 DSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSA 96
Query: 98 VVDKVIEDTHIINGKQVEIKRTIPRGAV--GSKDFKTKKIFVGGIPSNVTEDEFRDFFTR 155
+ V + I G+ +++ RG S F IFVG + VT+ F+
Sbjct: 97 AIAIVTLNGRNIFGQSIKVNWAYTRGQREDTSGHFH---IFVGDLSPEVTDATLYACFSA 153
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
Y D ++M D T RSRGFGF++F +++ A++DL
Sbjct: 154 YSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET +F ++GEI ++V++ D+ T + +G+GF+T+ DP + ++
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 106 -THIINGKQVEI 116
+ +I+G++
Sbjct: 86 PSPVIDGRRANC 97
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
K+F+GGLA ET +F ++GEI ++V++ D+ T + +G+GF+T+ DP + ++
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 106 -THIINGKQVEI 116
+ +I+G++
Sbjct: 86 PSPVIDGRRANC 97
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 28 HDQHHNSQPLTGDGASPGK-IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPR 86
H HH G A+ K +++G L + F GEI ++++++T Q
Sbjct: 75 HYLHHVPHVHHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTE 134
Query: 87 GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTK------KIFVGGI 140
G+GF+ + +KV++ + E + + D K IFVG +
Sbjct: 135 GYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDL 194
Query: 141 PSNVTEDEFRDFFT-RYGEVKDNQIMRDHSTNRSRGFGFITF 181
++VT+ + F+ +Y VK +++ D +T RS+G+GF+ F
Sbjct: 195 AADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRF 236
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 23/166 (13%)
Query: 47 IFIGGLARETTIAQFIKHFG-KYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
IF+G LA + T ++ F KY + + ++ D T + +G+GF+ + D K + +
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 106 TH--IINGKQVEIKRTIPRGAVGSK--------------DFKTKKIFVGGIPSNVTEDEF 149
+ + + + I PR + G + D IFVGG+ + T ++
Sbjct: 249 MNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDL 308
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGN 195
R F++YGE+ +I +G GF+ F + + ++ L N
Sbjct: 309 RQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLN 348
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 22 YSHREDHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRK 81
YSHR+ + + IFI L + F +G+I I D
Sbjct: 107 YSHRDPSSRKSGT----------ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-G 155
Query: 82 TAQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI---KRTIPRGAVGSKDFKTKKIF 136
+ Q +G+GF+ + I+ + +IN KQV + R R V SK K ++
Sbjct: 156 SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKT-KFNNVY 214
Query: 137 VGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFD-SEDAVDDLLSM-G 194
V + + TED+ ++ F YG + +MRD + RS+ FGF+ F+ +EDA + ++ G
Sbjct: 215 VKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAVEALNG 273
Query: 195 NKID 198
K+D
Sbjct: 274 KKVD 277
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 77/185 (41%), Gaps = 11/185 (5%)
Query: 30 QHHNSQPLTG--DGASPG--------KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKD 79
QH P+ +G P +++G L +Q F + G++ + +D
Sbjct: 7 QHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRD 66
Query: 80 RKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGG 139
T + G+G++ + +P + ++ + I+ S+ T IF+
Sbjct: 67 LATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKN 126
Query: 140 IPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDF 199
+ + D F+ +G++ +I D S +S+G+GF+ F++ED+ + + N +
Sbjct: 127 LDKTIDHKALHDTFSSFGQIMSCKIATDGS-GQSKGYGFVQFEAEDSAQNAIDKLNGMLI 185
Query: 200 AGTQV 204
QV
Sbjct: 186 NDKQV 190
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
D ++ +++G + T + F G + +++ K++ +GF+ Y D +
Sbjct: 55 DASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASA 110
Query: 100 DKVIEDTHIINGKQV---EIKRTIPRGAVGSKDFKTK-KIFVGGIPSNVTEDEFRDFFTR 155
I H G+Q+ +K +D +FVG + VT+ F+
Sbjct: 111 ALAIMTLH---GRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSV 167
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDLLS--MGNK 196
Y D ++M DH T RS+G+GF++F D++ A++D+ +GN+
Sbjct: 168 YTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNR 214
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
D ++ +++G + T + F G + +++ K++ +GF+ Y D +
Sbjct: 55 DASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASA 110
Query: 100 DKVIEDTHIINGKQV---EIKRTIPRGAVGSKDFKTK-KIFVGGIPSNVTEDEFRDFFTR 155
I H G+Q+ +K +D +FVG + VT+ F+
Sbjct: 111 ALAIMTLH---GRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSV 167
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDLLS--MGNK 196
Y D ++M DH T RS+G+GF++F D++ A++D+ +GN+
Sbjct: 168 YTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNR 214
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVV 99
D ++ +++G + T + F G + +++ K++ +GF+ Y D +
Sbjct: 39 DASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASA 94
Query: 100 DKVIEDTHIINGKQV---EIKRTIPRGAVGSKDFKTK-KIFVGGIPSNVTEDEFRDFFTR 155
I H G+Q+ +K +D +FVG + VT+ F+
Sbjct: 95 ALAIMTLH---GRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSV 151
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDLLS--MGNK 196
Y D ++M DH T RS+G+GF++F D++ A++D+ +GN+
Sbjct: 152 YTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNR 198
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 20/169 (11%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED- 105
+++ L T K F YG IT +VIMKD + + FGF+ + P +E
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 106 --THIINGKQVEI---KRTIPRGAVGSKDFKTKKI-----------FVGGIPSNVTEDEF 149
T +GK + + +R R A F+ +KI ++ + ++ +++
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKL 225
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFD-SEDAVDDLLSMGNKI 197
++ F+ +G + ++M D + S+GFGF+ F SE+A + M KI
Sbjct: 226 KEMFSEFGTITSCKVMFD-AHGHSKGFGFVAFSTSEEASKAINGMSGKI 273
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADP-SVVDKVIE 104
KIF+GGLA ET ++F ++G+I ++V++ DR T + +G+GF+T+ DP S +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 105 DTHIINGKQVEI 116
+I+G++
Sbjct: 87 PNPMIDGRRANC 98
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADP-SVVDKVIE 104
KIF+GGLA ET ++F ++G+I ++V++ DR T + +G+GF+T+ DP S +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 105 DTHIINGKQVEI 116
+I+G++
Sbjct: 87 PNPMIDGRRANC 98
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 28 HDQHHNSQPLTGDGASPGK-IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPR 86
H HH G A+ K +++G L + F GEI ++++++T Q
Sbjct: 75 HYLHHVPHVHHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTE 134
Query: 87 GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTK------KIFVGGI 140
G+GF+ + +KV++ + E + + D K IFVG +
Sbjct: 135 GYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDL 194
Query: 141 PSNVTEDEFRDFFT-RYGEVKDNQIMRDHSTNRSRGFGFITF 181
++VT+ + F+ +Y VK +++ D +T RS+G+GF+ F
Sbjct: 195 AADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRF 236
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 115 EIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSR 174
++ + P + + K++VGGI + + R+ F RYG+V D +++ D RS+
Sbjct: 22 DLSMSTPLAFQAIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSK 81
Query: 175 GFGFITF-DSEDAVDDLLSMGNK 196
GFGF+TF SE+A L +M N+
Sbjct: 82 GFGFVTFATSEEASAALQAMDNQ 104
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADP-SVVDKVIE 104
KIF+GGLA ET ++F ++G+I ++V++ DR T + +G+GF+T+ DP S +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 105 DTHIINGKQVEI 116
+I+G++
Sbjct: 87 PNPMIDGRRANC 98
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADP-SVVDKVIE 104
KIF+GGLA ET ++F ++G+I ++V++ DR T + +G+GF+T+ DP S +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 105 DTHIINGKQVEI 116
+I+G++
Sbjct: 87 PNPMIDGRRANC 98
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 6/157 (3%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED- 105
++IG L + + F GEIT +++++ + G+GF + + +KV+++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 106 --THIINGKQV--EIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFF-TRYGEVK 160
+ N Q T G GS + IFVG + ++VT+ + F + Y VK
Sbjct: 159 AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVK 218
Query: 161 DNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKI 197
+++ D +T RS+G+GF+ F E ++ N +
Sbjct: 219 AAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGV 255
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++ ++ +T + FG +G IT + +MKD + R FGF+ + P +E
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 107 H--IINGKQVEIKRTIPRGAVGSKDFKTK---------------KIFVGGIPSNVTEDEF 149
+ IN +V R A + K K +++ + + E++
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKI 197
+D F+ +G V ++M D S S+G GF+ F + E+A L M K+
Sbjct: 330 KDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKALNEMNGKL 377
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++ ++ +T + FG +G IT + +MKD + R FGF+ + P +E
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 107 H--IINGKQVEIKRTIPRGAVGSKDFKTK---------------KIFVGGIPSNVTEDEF 149
+ IN +V R A + K K +++ + + E++
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 150 RDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDS-EDAVDDLLSMGNKI 197
+D F+ +G V ++M D S S+G GF+ F + E+A L M K+
Sbjct: 330 KDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKALNEMNGKL 377
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED- 105
I++G L F GE+ + ++++++T Q G+GF+ + ++ +KV+++
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 106 --THIINGKQVEIKRTIPRGAVG-------SKDFKTKKIFVGGIPSNVTEDEFRD-FFTR 155
T + N Q A G S+ +FVG + +VT+ ++ F ++
Sbjct: 178 NGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASK 237
Query: 156 YGEVKDNQIMRDHSTNRSRGFGFITFDSE 184
+ +K +++ D +T RS+G+GF+ F E
Sbjct: 238 FSSIKGAKVVIDSNTGRSKGYGFVRFGDE 266
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 43 SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKV 102
S +F+GG++ T KHF YG++ D+ I++DR+T +PRGFGF+T+A
Sbjct: 32 SSANLFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAA 87
Query: 103 IEDTHI 108
++ +
Sbjct: 88 LQTMSL 93
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 126 GSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITF-DSE 184
++ + +F+GGI N R F+ YG+V D +I+RD T R RGFGF+TF +E
Sbjct: 27 ATRSMSSANLFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTE 82
Query: 185 DAVDDLLSMGNKI------DFAGTQVEI 206
+A L +M I D G +V +
Sbjct: 83 EASAALQTMSLAIKSMKNQDLYGRKVRV 110
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 17/160 (10%)
Query: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYAD---P 96
D ++ +++G + + T + F G + + + K++ +GFI Y D
Sbjct: 57 DPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 112
Query: 97 SVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKT--KKIFVGGIPSNVTEDEFRDFFT 154
++ + H+ G+ +++ A G ++ + IFVG + VT+ F+
Sbjct: 113 ALAILTLNGRHLF-GQPIKVNWAY---ASGQREDTSGHYNIFVGDLSPEVTDATLFACFS 168
Query: 155 RYGEVKDNQIMRDHSTNRSRGFGFITF----DSEDAVDDL 190
Y D ++M D T RSRGFGF++F D++ A++DL
Sbjct: 169 VYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 208
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
K+FVGG+ + TE D F+ YG+V + +++ D + +S+G+GF+TF S+D + ++
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 194 GNKIDFAGTQV 204
N+ G V
Sbjct: 93 MNEKALNGRVV 103
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 26 EDHDQHHNSQPLTGDGA--SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTA 83
E+HD+H + + +IF+GGL R+TT K F + GE+ + + K+ T+
Sbjct: 397 EEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTS 456
Query: 84 QPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIP 141
+ RG+ + +A+ K + + +I GK+ G S+D T +F+G I
Sbjct: 457 KNRGYAVVRFANKEHAKKALSEMKNPVIRGKRC--------GTSPSEDNDT--LFLGNIC 506
Query: 142 SNVTEDEFRDFFTRYGE--VKDNQIMRD-HSTNRSRGFGFITFDS 183
+ T++ + YG V++ ++ D SRGF F+ F
Sbjct: 507 NTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSC 551
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 14/173 (8%)
Query: 41 GASPGK----IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFI-- 91
G SP + +F+G + T + Q +K +G G +++ + RGF F+
Sbjct: 490 GTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
Query: 92 -TYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKD----FKTKKIFVGGIPSNVTE 146
+AD + K ++ +I G + + D + K +F+ G+P + E
Sbjct: 550 SCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDE 609
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDF 199
D R+ YGE+ + R ST++ + GF+ F + +A + NK +
Sbjct: 610 DHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSEL 662
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDA 186
K+FVGG+ +V E +D F+ +G+V + +I+ D + R+RGFGF+ F +EDA
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDA 89
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 26 EDHDQHHNSQPLTGDGA--SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTA 83
E+HD+H + + +IF+GGL R+TT K F + GE+ + + K+ T+
Sbjct: 397 EEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTS 456
Query: 84 QPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIP 141
+ RG+ + +A+ K + + +I GK+ G S+D T +F+G I
Sbjct: 457 KNRGYAVVRFANKEHAKKALSEMKNPVIRGKRC--------GTSPSEDNDT--LFLGNIC 506
Query: 142 SNVTEDEFRDFFTRYGE--VKDNQIMRD-HSTNRSRGFGFITFDS 183
+ T++ + YG V++ ++ D SRGF F+ F
Sbjct: 507 NTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSC 551
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 14/173 (8%)
Query: 41 GASPGK----IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFI-- 91
G SP + +F+G + T + Q +K +G G +++ + RGF F+
Sbjct: 490 GTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
Query: 92 -TYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKD----FKTKKIFVGGIPSNVTE 146
+AD + K ++ +I G + + D + K +F+ G+P + E
Sbjct: 550 SCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDE 609
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDF 199
D R+ YGE+ + R ST++ + GF+ F + +A + NK +
Sbjct: 610 DHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSEL 662
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 26 EDHDQHHNSQPLTGDGA--SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTA 83
E+HD+H + + +IF+GGL R+TT K F + GE+ + + K+ T+
Sbjct: 397 EEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTS 456
Query: 84 QPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIP 141
+ RG+ + +A+ K + + +I GK+ G S+D T +F+G I
Sbjct: 457 KNRGYAVVRFANKEHAKKALSEMKNPVIRGKRC--------GTSPSEDNDT--LFLGNIC 506
Query: 142 SNVTEDEFRDFFTRYGE--VKDNQIMRD-HSTNRSRGFGFITFDS 183
+ T++ + YG V++ ++ D SRGF F+ F
Sbjct: 507 NTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSC 551
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 14/173 (8%)
Query: 41 GASPGK----IFIGGLARETT---IAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFI-- 91
G SP + +F+G + T + Q +K +G G +++ + RGF F+
Sbjct: 490 GTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
Query: 92 -TYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKD----FKTKKIFVGGIPSNVTE 146
+AD + K ++ +I G + + D + K +F+ G+P + E
Sbjct: 550 SCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDE 609
Query: 147 DEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDF 199
D R+ YGE+ + R ST++ + GF+ F + +A + NK +
Sbjct: 610 DHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSEL 662
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++++GG+ + + + GE+ IMK + ++ +GF F+TY + + K IE+
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE-VKDNQI 164
+ K +IK + + ++F+G IP + E + + T G V ++
Sbjct: 171 LNNTEFKGRKIKCSTSQA--------KNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVEL 222
Query: 165 MRD-HSTNRSRGFGFITFDSEDAVD 188
++D + + +RGF FI + + +
Sbjct: 223 VKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+++VGGIP + ++ ++F R GEV +IM+ + ++GF F+T+ + + +
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 194 GNKIDFAGTQVEI 206
N +F G +++
Sbjct: 171 LNNTEFKGRKIKC 183
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++++GG+ + + + GE+ IMK + ++ +GF F+TY + + K IE+
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE-VKDNQI 164
+ K +IK + + ++F+G IP + E + + T G V ++
Sbjct: 171 LNNTEFKGRKIKCSTSQA--------KNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVEL 222
Query: 165 MRD-HSTNRSRGFGFITFDSEDAVD 188
++D + + +RGF FI + + +
Sbjct: 223 VKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+++VGGIP + ++ ++F R GEV +IM+ + ++GF F+T+ + + +
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 194 GNKIDFAGTQVEI 206
N +F G +++
Sbjct: 171 LNNTEFKGRKIKC 183
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIED 105
++++GG+ + + + GE+ IMK + ++ +GF F+TY + + K IE+
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 106 THIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGE-VKDNQI 164
+ K +IK + + ++F+G IP + E + + T G V ++
Sbjct: 171 LNNTEFKGRKIKCSTSQA--------KNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVEL 222
Query: 165 MRD-HSTNRSRGFGFITFDSEDAVD 188
++D + + +RGF FI + + +
Sbjct: 223 VKDMKNISNNRGFAFIDYHNNQCAE 247
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVDDLLSM 193
+++VGGIP + ++ ++F R GEV +IM+ + ++GF F+T+ + + +
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 194 GNKIDFAGTQVEI 206
N +F G +++
Sbjct: 171 LNNTEFKGRKIKC 183
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 24/161 (14%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++ L + + + F +G+I + KD +GFGF+ + +P + +E
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAME-- 247
Query: 107 HIINGKQV--------EIKRTIPRGAVGSKDFKTKK-----------IFVGGIPSNVTED 147
+NG Q+ ++ R + + F+ K+ I+V I NV+++
Sbjct: 248 -TMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDE 306
Query: 148 EFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEDAVD 188
RD F+ G + +IMRD S+GFGF+ F + + +
Sbjct: 307 GLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEAN 346
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/149 (18%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 42 ASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDK 101
A+P +++G L + + +Q F + + I +D + + +G++ + P +
Sbjct: 7 ATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIR 66
Query: 102 VIE--DTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
IE + +NGK + + + R ++ +FV + ++ D F ++G +
Sbjct: 67 AIEVKNHSTLNGKAIRVMWS--RRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNI 124
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSEDAVD 188
++++ +S+G+GF+ F++E++ +
Sbjct: 125 LSSKVVMSED-GKSKGYGFVQFETEESAN 152
>Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45037623 | 20130731
Length = 923
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE-- 104
+F+G + ++ F +YG+I + RGF I+Y D ++
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTLYT-----ACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 105 DTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQI 164
++ ++++I+ +IP+G KD + + G+ S V +DE + F YGE+K +I
Sbjct: 327 QNRTLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIK--EI 384
Query: 165 MRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
N + F +D A L S+ N I AG +++
Sbjct: 385 YEYPEMNHIKYIEF--YDVRGAEASLRSL-NGICLAGKHIKL 423
>Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45043643-45036753 | 20130731
Length = 969
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE-- 104
+F+G + ++ F +YG+I + RGF I+Y D ++
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTLYT-----ACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 105 DTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQI 164
++ ++++I+ +IP+G KD + + G+ S V +DE + F YGE+K +I
Sbjct: 327 QNRTLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIK--EI 384
Query: 165 MRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
N + F +D A L S+ N I AG +++
Sbjct: 385 YEYPEMNHIKYIEF--YDVRGAEASLRSL-NGICLAGKHIKL 423
>Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45036736 | 20130731
Length = 969
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE-- 104
+F+G + ++ F +YG+I + RGF I+Y D ++
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTLYT-----ACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 105 DTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQI 164
++ ++++I+ +IP+G KD + + G+ S V +DE + F YGE+K +I
Sbjct: 327 QNRTLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIK--EI 384
Query: 165 MRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
N + F +D A L S+ N I AG +++
Sbjct: 385 YEYPEMNHIKYIEF--YDVRGAEASLRSL-NGICLAGKHIKL 423
>Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044605-45036753 | 20130731
Length = 923
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE-- 104
+F+G + ++ F +YG+I + RGF I+Y D ++
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTLYT-----ACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 105 DTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQI 164
++ ++++I+ +IP+G KD + + G+ S V +DE + F YGE+K +I
Sbjct: 327 QNRTLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIK--EI 384
Query: 165 MRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
N + F +D A L S+ N I AG +++
Sbjct: 385 YEYPEMNHIKYIEF--YDVRGAEASLRSL-NGICLAGKHIKL 423
>Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044593-45036753 | 20130731
Length = 923
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE-- 104
+F+G + ++ F +YG+I + RGF I+Y D ++
Sbjct: 272 LFVGNITSNAEDSELKALFEQYGDIRTLYT-----ACKHRGFVMISYYDLRAAQNAMKAL 326
Query: 105 DTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQI 164
++ ++++I+ +IP+G KD + + G+ S V +DE + F YGE+K +I
Sbjct: 327 QNRTLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIK--EI 384
Query: 165 MRDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEI 206
N + F +D A L S+ N I AG +++
Sbjct: 385 YEYPEMNHIKYIEF--YDVRGAEASLRSL-NGICLAGKHIKL 423
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 27 DHDQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPR 86
D D+ L ++++GG+ + + + GE+ IMK + ++ +
Sbjct: 92 DDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENK 151
Query: 87 GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSKDFKTKKIFVGGIPSNVTE 146
GF F+TY + + K IE+ + K +IK + + ++F+G IP + E
Sbjct: 152 GFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQA--------KNRLFIGNIPRSWGE 203
Query: 147 DEFRDFFTRYGE-VKDNQIMRD-HSTNRSRGFGFITFDSEDAVD 188
+ + T G V ++++D + + +RGF FI + + +
Sbjct: 204 KDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
>Medtr8g100160.1 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr8:40164328-40156696 | 20130731
Length = 964
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 65 FGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPR 122
F +YG+I + RGF I+Y D + ++ + + ++++I +IP+
Sbjct: 289 FEQYGDIRTMYT-----ACKHRGFVMISYFDLRAAQRAMQALQSKPLRSRKLDIHYSIPK 343
Query: 123 GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFD 182
KD + + G+ S+V+ DEF+ F YGE+KD + + FI F
Sbjct: 344 VNAPEKDIGHGTLMLSGLDSSVSNDEFKRIFGFYGEIKD-----IYEYPEMKHLKFIEFY 398
Query: 183 SEDAVDDLLSMGNKIDFAGTQVEI 206
A + L N+I+ AG Q+++
Sbjct: 399 DVRAAEAALRALNRIEIAGKQIKL 422
>Medtr8g100160.2 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr8:40164328-40156696 | 20130731
Length = 968
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 65 FGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPR 122
F +YG+I + RGF I+Y D + ++ + + ++++I +IP+
Sbjct: 289 FEQYGDIRTMYT-----ACKHRGFVMISYFDLRAAQRAMQALQSKPLRSRKLDIHYSIPK 343
Query: 123 GAVGSKDFKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFD 182
KD + + G+ S+V+ DEF+ F YGE+KD + + FI F
Sbjct: 344 VNAPEKDIGHGTLMLSGLDSSVSNDEFKRIFGFYGEIKD-----IYEYPEMKHLKFIEFY 398
Query: 183 SEDAVDDLLSMGNKIDFAGTQVEI 206
A + L N+I+ AG Q+++
Sbjct: 399 DVRAAEAALRALNRIEIAGKQIKL 422
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIEDT 106
+++G L + T +Q F + G++ I +D + Q G+G++ +++P K ++
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 107 HI--INGKQVEIKRTIPRGAVGSKDFKTKK-----IFVGGIPSNVTEDEFRDFFTRYGEV 159
+ +N K + I + +D +K IF+ + + D F+ +G +
Sbjct: 86 NFTPLNNKPIRIMYS-------HRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNI 138
Query: 160 KDNQIMRDHSTNRSRGFGFITFDSED----AVDDLLSM 193
+I D S S+G+GF+ F++E+ A+D L M
Sbjct: 139 LSCKIAMDAS-GLSKGYGFVQFENEESAQSAIDKLNGM 175
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 8 HVVGGGESNDVARTYSHREDHDQHHNSQPLTGDGAS-PGKIFIGGLARETTIAQFIKHFG 66
+ VG +ND ++ + E+ S P G S P ++F+ L TT + +HF
Sbjct: 294 NTVGKDVANDKSQVNATEEEGQL---SNPEDKKGVSEPCRLFVRNLPYSTTEEELEEHFS 350
Query: 67 KYGEITDSVIMKDRKTAQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPRGA 124
++G ++ + ++ D+ T + +G +I ++ P + +E D I G+ + + IPR +
Sbjct: 351 QFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEESDNSIFQGRLLHVMPAIPRHS 410
Query: 125 -------VGSKDFKTKK 134
GSK K ++
Sbjct: 411 NNEENKNQGSKTLKQRR 427
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 111 GKQVEIKRTIPRGAVGSKD--FKTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDNQIMRDH 168
G+ +E +P + S++ KTKK+FV G+ +E R F +GE+ + +++ D
Sbjct: 168 GRNLENSLNMPNSSEASQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDK 227
Query: 169 STNRSRGFGFITFDSEDAVDDLLSMGN 195
+ RS+G+ FI + +E+A L N
Sbjct: 228 ISKRSKGYAFIEYTTEEAASAALKEMN 254