Miyakogusa Predicted Gene
- Lj2g3v0918390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0918390.1 tr|I1N5M3|I1N5M3_SOYBN Elongation factor Ts,
mitochondrial OS=Glycine max GN=Gma.57273 PE=3
SV=1,76.15,0,EF_Ts,Translation elongation factor EFTs/EF1B; seg,NULL;
EF_TS,Translation elongation factor EFTs/EF,CUFF.35753.1
(353 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g003970.1 | elongation factor Ts protein | HC | chr6:44222... 527 e-150
Medtr6g088270.1 | elongation factor Ts protein | HC | chr6:33420... 82 8e-16
Medtr6g088250.1 | disease resistance protein (TIR-NBS-LRR class)... 65 8e-11
Medtr2g039790.1 | elongation factor Ts protein | LC | chr2:17447... 61 2e-09
Medtr6g488290.1 | translation elongation factor Ts protein | HC ... 54 2e-07
Medtr0428s0020.1 | translation elongation factor Ts protein | HC... 54 3e-07
Medtr6g084360.1 | NB-ARC domain protein | LC | chr6:31560151-315... 52 1e-06
Medtr6g027070.1 | translation elongation factor Ts protein | HC ... 49 7e-06
Medtr6g087300.1 | translation elongation factor Ts protein | HC ... 49 8e-06
>Medtr6g003970.1 | elongation factor Ts protein | HC |
chr6:44222-38080 | 20130731
Length = 345
Score = 527 bits (1358), Expect = e-150, Method: Compositional matrix adjust.
Identities = 265/354 (74%), Positives = 295/354 (83%), Gaps = 10/354 (2%)
Query: 1 MGFH-VAARRFYQNLAAAATYGRQCHHYSSSASNEMNLVKQLRERTSAPIKDVKAALVDS 59
MG V RR Y L AA +YSS+ASNE+NL+KQLRERTSAPIKDVKAALV S
Sbjct: 1 MGLSGVVGRRLYMKLFTAA-------NYSSTASNEINLIKQLRERTSAPIKDVKAALVAS 53
Query: 60 NWDIEEAQKELRKRGKVLASKKSSRTASEGLLALAHDRTRAALVELNCETDFVARNEIFQ 119
NWD++ AQ ELRK+G VLASKKSSRTASEGLLALA + + AL+ELNCETDFVARN+IFQ
Sbjct: 54 NWDLDAAQTELRKKGIVLASKKSSRTASEGLLALAQNHHKTALIELNCETDFVARNDIFQ 113
Query: 120 HXXXXXXXXXXXXENSSDAPFHFGPQSLEEMRLDLQHPKISGETTVHNAITEVAAIMGEN 179
H + S++ FHFGPQSLEEM+L+L+HPKI+GETTV NAITEVAAIMGEN
Sbjct: 114 HLARSLANQALLLD--SNSSFHFGPQSLEEMKLNLEHPKINGETTVQNAITEVAAIMGEN 171
Query: 180 VKLRRGFVMPASSQGLISTYLHTSPQPGLGRIAGILSLEVDNGNTRVDALQRVGSELAMH 239
VKLRRG++M A S GL+STYLHTSP PGLGRIAGILSLEVD G T DALQRVGSELAMH
Sbjct: 172 VKLRRGYLMHAPSNGLVSTYLHTSPLPGLGRIAGILSLEVDGGKTEADALQRVGSELAMH 231
Query: 240 VVAAKPLFLTKELVSSEALENEREVLKSQAEASGKPQMAINKMVEGRLRKYFEEVVLMEQ 299
VVAAKPLFLTKELVS +ALE ERE+LKSQAEA+GKPQMAI +MVEGRLRKYFE VVLM+Q
Sbjct: 232 VVAAKPLFLTKELVSLDALEYEREILKSQAEATGKPQMAIERMVEGRLRKYFENVVLMDQ 291
Query: 300 KFILNDALNVKTVLDNLSKEVGSSVRIGSFLRMEVGEGIASQEADSSESVAQVA 353
KF++ND + VK VLDNLSKEVGSSVR+ SFLRMEVGEGIA QE DSSESVAQVA
Sbjct: 292 KFVINDTIKVKEVLDNLSKEVGSSVRVASFLRMEVGEGIARQETDSSESVAQVA 345
>Medtr6g088270.1 | elongation factor Ts protein | HC |
chr6:33420399-33413908 | 20130731
Length = 1054
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 38/204 (18%)
Query: 28 SSSASNEMNLVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTAS 87
SS A+ LVKQLR+ T A + D K AL +S DI +AQ+ LRK+G A KK++R +
Sbjct: 604 SSKATISPALVKQLRDETGAGMMDCKNALSESEGDIIKAQELLRKKGLASADKKATRATA 663
Query: 88 EGLL-ALAHDRTRAALVELNCETDFVARNEIFQHXXXXXXXXXXXXEN-----SSDAPFH 141
EG + + HD LVE+NCETDFV+R EIF+ + D P
Sbjct: 664 EGRIGSYIHDSRIGVLVEVNCETDFVSRGEIFKELVDDIAMQVAACPQVEYVVTEDVPEE 723
Query: 142 F----------------GPQS-------------LEEMRLDLQHPKISGE-TTVHNAITE 171
F P+ LE++ L L+ P I + TV + + +
Sbjct: 724 FLKKETEIEMQKEDLASKPEQIRSRIVEGRIRKRLEDLAL-LEQPYIKNDKVTVKDMVKQ 782
Query: 172 VAAIMGENVKLRRGFVMPASSQGL 195
A +GEN+K+ R FV +GL
Sbjct: 783 TIATIGENMKVTR-FVRFNLGEGL 805
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 36 NLVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLLA-LA 94
+LVKQLRE T A + D K AL ++ D+E+AQ LRK+G A KKS R A+EG +
Sbjct: 853 SLVKQLREETGAGMMDCKKALAETEGDLEKAQAYLRKKGLSSADKKSGRLAAEGRIGTYI 912
Query: 95 HDRTRAALVELNCETDFVARNEIFQH 120
HD L+E+NCETDFV R+E F+
Sbjct: 913 HDARIGVLIEVNCETDFVGRSEKFKE 938
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 190 ASSQGLISTYLHTSPQPGLGRIAGILSLEVDNG-NTRVDALQRVGSELAMHVVAAKPL-F 247
A+++G I +Y+H S RI ++ + + +R + + + ++AM V A + +
Sbjct: 661 ATAEGRIGSYIHDS------RIGVLVEVNCETDFVSRGEIFKELVDDIAMQVAACPQVEY 714
Query: 248 LTKELVSSEALENEREVLKSQAEASGKPQMAINKMVEGRLRKYFEEVVLMEQKFILNDAL 307
+ E V E L+ E E+ + + + KP+ +++VEGR+RK E++ L+EQ +I ND +
Sbjct: 715 VVTEDVPEEFLKKETEIEMQKEDLASKPEQIRSRIVEGRIRKRLEDLALLEQPYIKNDKV 774
Query: 308 NVKTVLDNLSKEVGSSVRIGSFLRMEVGEGIASQEADSSESVA 350
VK ++ +G ++++ F+R +GEG+ + D + VA
Sbjct: 775 TVKDMVKQTIATIGENMKVTRFVRFNLGEGLEKKSQDFAAEVA 817
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 191 SSQGLISTYLHTSPQPGLGRIAGILSLEVDNGNT-RVDALQRVGSELAMHVVAAKPL-FL 248
+++G I TY+H + RI ++ + + R + + + +LAM V A + F+
Sbjct: 903 AAEGRIGTYIHDA------RIGVLIEVNCETDFVGRSEKFKELVDDLAMQVAACPQVQFV 956
Query: 249 TKELVSSEALENEREVLKSQAEASGKPQMAINKMVEGRLRKYFEEVVLMEQKFILNDALN 308
+ E + + E+E+ + + + KP+ K+VEGR+ K E+ L+EQ FI +D++
Sbjct: 957 SIEDIPETIVTKEKELEMQREDLASKPENIREKIVEGRISKRLGELALLEQPFIKDDSVV 1016
Query: 309 VKTVLDNLSKEVGSSVRIGSFLRMEVGEGIASQEA 343
VK ++ +G ++++ F+R +GE + + A
Sbjct: 1017 VKDLVRQSIAAIGENIKVRRFVRFTLGETVQKETA 1051
>Medtr6g088250.1 | disease resistance protein (TIR-NBS-LRR class),
putative | LC | chr6:33403560-33394883 | 20130731
Length = 1392
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 37 LVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLLALAHD 96
L +QL + TSA I D K AL ++ D+E+AQ LR +G A KKS R A+EG + D
Sbjct: 1265 LFQQLSQETSAGIMDCKKALAETKGDLEKAQSYLRTKGLSSADKKSGRLAAEGRIGKYID 1324
Query: 97 RTRA-ALVELNCETDFVA 113
R L+E+NCETDFV
Sbjct: 1325 DARIYVLIEVNCETDFVG 1342
>Medtr2g039790.1 | elongation factor Ts protein | LC |
chr2:17447608-17448273 | 20130731
Length = 149
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Query: 36 NLVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLLA-LA 94
+LVKQLRE T A I D K AL ++ D+E+AQ KS R A+EG +
Sbjct: 24 SLVKQLREETGAGIMDCKKALAETEGDLEKAQ-------------KSGRLAAEGRIGTYI 70
Query: 95 HDRTRAALVELNCETDFVARNEIFQH 120
HD L+ELN ETDFV R E F+
Sbjct: 71 HDARIGGLIELNFETDFVGRRERFKE 96
>Medtr6g488290.1 | translation elongation factor Ts protein | HC |
chr6:33259340-33257883 | 20130731
Length = 193
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 37 LVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLLALAHD 96
LVKQLRE T A + D K A ++ D+E+ Q L K+G A KKS R A EG +
Sbjct: 48 LVKQLREETGAGMMDCKKARAETEGDLEKPQAYLIKKGLSSADKKSGRLAEEGRI----- 102
Query: 97 RTRAALVELNCETDFVARNEIFQH 120
+N ETDFV R+E F+
Sbjct: 103 --------VNGETDFVGRSEKFKE 118
>Medtr0428s0020.1 | translation elongation factor Ts protein | HC |
scaffold0428:2758-2001 | 20130731
Length = 222
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 37 LVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLLALAHD 96
LVKQLRE T A + D K A ++ D+E+ Q L K+G A KKS R A EG +
Sbjct: 48 LVKQLREETGAGMMDCKKARAETEGDLEKPQAYLIKKGLSSADKKSGRLAEEGRI----- 102
Query: 97 RTRAALVELNCETDFVARNEIFQH 120
+N ETDFV R+E F+
Sbjct: 103 --------VNGETDFVGRSEKFKE 118
>Medtr6g084360.1 | NB-ARC domain protein | LC | chr6:31560151-31565340
| 20130731
Length = 1111
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 64 EEAQKELRKRGKVLASKKSSRTASEGLLA-LAHDRTRAALVELNCETDFVARNEIFQ 119
E+AQ LRK+G A KKS R +EG + HD + L+E+ CETDF+ R+E F+
Sbjct: 973 EKAQAYLRKKGLSSADKKSGRRVAEGRIGTYIHDSRISVLIEVKCETDFIGRSEKFK 1029
>Medtr6g027070.1 | translation elongation factor Ts protein | HC |
chr6:9165233-9164731 | 20130731
Length = 153
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 38 VKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLL-ALAHD 96
VK+L+E T A + D K AL +S DI +AQK LRK+G A+KK+SR +EG + + HD
Sbjct: 18 VKELQEETGAGMMDHKNALSESERDIIKAQKLLRKKGLASANKKASRATAEGRIGSYIHD 77
Query: 97 RTRAALVELN 106
+ LVE+
Sbjct: 78 SRISVLVEVK 87
>Medtr6g087300.1 | translation elongation factor Ts protein | HC |
chr6:33294847-33292785 | 20130731
Length = 362
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 24 CHHYSSSASNEMNLVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSS 83
C+ S+ ++ +L KQLRE T A + D K A ++ D+E+ + LRK+G A KKS
Sbjct: 202 CYKQSTVVVSD-SLDKQLREETGAGMMDCKKAHAETEGDLEKVKAYLRKKGLSFADKKSR 260
Query: 84 RTASEGLLA-LAHDRTRAALVELNCETDFVARNEIFQ 119
R A+EG + HD + +V + FV+ +I +
Sbjct: 261 RLAAEGRIGTYIHD---SCIVAAILQVQFVSIEDILK 294