Miyakogusa Predicted Gene

Lj2g3v0918380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0918380.1 tr|B9N7N9|B9N7N9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_584639 PE=4
SV=1,95.45,0,Translation initiation factor 2 beta, aIF2beta,
N-terminal domain,Translation initiation factor IF2/,CUFF.35752.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g082940.1 | eukaryotic translation initiation factor 5 | H...   339   8e-94
Medtr5g075530.1 | eukaryotic translation initiation factor 2 sub...    55   3e-08
Medtr3g467620.2 | eukaryotic translation initiation factor 2 sub...    52   4e-07
Medtr3g467620.1 | eukaryotic translation initiation factor 2 sub...    52   4e-07

>Medtr7g082940.1 | eukaryotic translation initiation factor 5 | HC |
           chr7:31827109-31830205 | 20130731
          Length = 439

 Score =  339 bits (870), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 155/166 (93%), Positives = 163/166 (98%)

Query: 1   MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFG 60
           MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPA+YTTKYFG
Sbjct: 1   MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 60

Query: 61  CELGAQSKFDEKNGTSHVNGAHETAKLAALLENFIKKYVQCYGCGNPETEVLITKSQMIQ 120
           CELGAQSKFDEK GTSHVNGAH+TAKLA LLENFIKKYVQCYGCGNPETE++ITK+QMIQ
Sbjct: 61  CELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMIQ 120

Query: 121 LKCAACGFVSDVDMRDKLTTFIVKNPPETKKGSKDKKAMRRAEKER 166
           +KCAACGFVSDVDMRDKLTTFI+KNPPE+KKG KDKKAMRRAEKER
Sbjct: 121 MKCAACGFVSDVDMRDKLTTFIIKNPPESKKGGKDKKAMRRAEKER 166


>Medtr5g075530.1 | eukaryotic translation initiation factor 2
           subunit beta | HC | chr5:32120341-32114833 | 20130731
          Length = 322

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 35  KTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKNGTSHVNGAHETAKLAALLENF 94
           KT  VN +D+ K++ RP  +   +   ELG     D +     V G         +L  +
Sbjct: 209 KTVFVNFMDLCKSMHRPPDHVMAFLLAELGTSGSLDGQQRLV-VKGRFAPKNFEGILRRY 267

Query: 95  IKKYVQCYGCGNPETEVLITKSQMIQLKCAACG 127
           I +YV C GC +P+T +L  ++++  L+C  CG
Sbjct: 268 INEYVICIGCKSPDT-LLSKENRLFFLRCEKCG 299


>Medtr3g467620.2 | eukaryotic translation initiation factor 2
           subunit beta | HC | chr3:27896951-27892542 | 20130731
          Length = 269

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 35  KTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKNGTSHVNGAHETAKLAALLENF 94
           KT  VN +D+ K + R   +   +   ELG     D +     V G         +L  +
Sbjct: 155 KTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLV-VKGRFAPKNFEGILRRY 213

Query: 95  IKKYVQCYGCGNPETEVLITKSQMIQLKCAACG 127
           I +YV C GC +P+T +L  ++++  L+C  CG
Sbjct: 214 INEYVICLGCKSPDT-ILSKENRLFFLRCEKCG 245


>Medtr3g467620.1 | eukaryotic translation initiation factor 2
           subunit beta | HC | chr3:27896952-27892542 | 20130731
          Length = 269

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 35  KTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKNGTSHVNGAHETAKLAALLENF 94
           KT  VN +D+ K + R   +   +   ELG     D +     V G         +L  +
Sbjct: 155 KTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLV-VKGRFAPKNFEGILRRY 213

Query: 95  IKKYVQCYGCGNPETEVLITKSQMIQLKCAACG 127
           I +YV C GC +P+T +L  ++++  L+C  CG
Sbjct: 214 INEYVICLGCKSPDT-ILSKENRLFFLRCEKCG 245