Miyakogusa Predicted Gene
- Lj2g3v0917310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0917310.1 Non Characterized Hit- tr|I3SHH6|I3SHH6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,Ribosomal_L22,Ribosomal protein L22/L17; no
description,Ribosomal protein L22/L17; seg,NULL; CHLOROP,CUFF.35741.1
(157 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g100410.1 | 50S ribosomal protein L22 | HC | chr7:40430222... 174 2e-44
Medtr1g040020.2 | 50S ribosomal protein L22 | HC | chr1:14644190... 51 4e-07
Medtr1g040020.3 | 50S ribosomal protein L22 | HC | chr1:14644190... 51 4e-07
Medtr1g040020.1 | 50S ribosomal protein L22 | HC | chr1:14644188... 51 4e-07
>Medtr7g100410.1 | 50S ribosomal protein L22 | HC |
chr7:40430222-40427715 | 20130731
Length = 198
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/113 (78%), Positives = 95/113 (84%), Gaps = 3/113 (2%)
Query: 45 ISLQPTTVSNPNNPFVCHARRARAPFGGQETNQQYVEAYAVGRHIRTSADKARRVIDQIR 104
ISL+ T N NNPF CH ++ FG QE+N+ Y EA AVG+HIR SADKARRVID IR
Sbjct: 46 ISLKTVTPDN-NNPFACHVSSSQ--FGVQESNKSYAEAVAVGKHIRMSADKARRVIDTIR 102
Query: 105 GRPYEETLMILELMPYRACEPILKIVFSAGANASNNLGLSKSSLVISKAEVNE 157
GRPYEETLMILELMPYRACE ILKIVFSAGANASNNLGLSKSSLVISKAEVNE
Sbjct: 103 GRPYEETLMILELMPYRACETILKIVFSAGANASNNLGLSKSSLVISKAEVNE 155
>Medtr1g040020.2 | 50S ribosomal protein L22 | HC |
chr1:14644190-14639127 | 20130731
Length = 326
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 70 FG---GQETNQQYVEAYAVGRHIRTSADKARRVIDQIRGRPYEETLMILELMPYRACEPI 126
FG GQE N++ + A+ + I+ S K V +RG ++ L+ L+++ RA + +
Sbjct: 93 FGSSQGQEQNKKADKVQAILKKIKQSPKKVNLVAALVRGMLVKDALLQLQVLVKRASKTV 152
Query: 127 LKIVFSAGANASNNLGLSKSSLVISKAEVNE 157
+++ SA ANAS+N GL+ L++++A V +
Sbjct: 153 YQVIHSARANASHNHGLNADRLIVAEAFVGK 183
>Medtr1g040020.3 | 50S ribosomal protein L22 | HC |
chr1:14644190-14639174 | 20130731
Length = 326
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 70 FG---GQETNQQYVEAYAVGRHIRTSADKARRVIDQIRGRPYEETLMILELMPYRACEPI 126
FG GQE N++ + A+ + I+ S K V +RG ++ L+ L+++ RA + +
Sbjct: 93 FGSSQGQEQNKKADKVQAILKKIKQSPKKVNLVAALVRGMLVKDALLQLQVLVKRASKTV 152
Query: 127 LKIVFSAGANASNNLGLSKSSLVISKAEVNE 157
+++ SA ANAS+N GL+ L++++A V +
Sbjct: 153 YQVIHSARANASHNHGLNADRLIVAEAFVGK 183
>Medtr1g040020.1 | 50S ribosomal protein L22 | HC |
chr1:14644188-14639192 | 20130731
Length = 326
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 70 FG---GQETNQQYVEAYAVGRHIRTSADKARRVIDQIRGRPYEETLMILELMPYRACEPI 126
FG GQE N++ + A+ + I+ S K V +RG ++ L+ L+++ RA + +
Sbjct: 93 FGSSQGQEQNKKADKVQAILKKIKQSPKKVNLVAALVRGMLVKDALLQLQVLVKRASKTV 152
Query: 127 LKIVFSAGANASNNLGLSKSSLVISKAEVNE 157
+++ SA ANAS+N GL+ L++++A V +
Sbjct: 153 YQVIHSARANASHNHGLNADRLIVAEAFVGK 183