Miyakogusa Predicted Gene

Lj2g3v0916180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0916180.1 tr|B9I8E0|B9I8E0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_807105 PE=4 SV=1,65.96,1e-17,
,CUFF.35730.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g004010.1 | hypothetical protein | HC | chr6:65902-63406 |...   117   3e-27

>Medtr6g004010.1 | hypothetical protein | HC | chr6:65902-63406 |
           20130731
          Length = 126

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 74/126 (58%), Gaps = 1/126 (0%)

Query: 1   MAKFNVVQXXXXXXXXXXXXXIHGDPTTGKLKVRTQPQSLSGKRKRKLFNYWRREQKEAL 60
           MAKFNVVQ             +HGDPTTGKLK+R QP +LSGKRKRKLF  WRREQK+A+
Sbjct: 1   MAKFNVVQKRRRALVAERKRLVHGDPTTGKLKIRKQPVNLSGKRKRKLFKQWRREQKDAV 60

Query: 61  QNGVVTMEDVQMAVAEGATKDA-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAADIS 119
           ++G+++MEDVQMAVAEG TKD                                 PAA++S
Sbjct: 61  ESGLISMEDVQMAVAEGETKDKNAISSAKFHLKKKGLKLKQLKGKGKNKRKSDVPAAEVS 120

Query: 120 ANAMVE 125
            +AMVE
Sbjct: 121 TDAMVE 126