Miyakogusa Predicted Gene

Lj2g3v0912030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0912030.1 Non Characterized Hit- tr|B9RK95|B9RK95_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,53.85,5e-18,seg,NULL; PRA1,Prenylated rab acceptor PRA1; PRENYLATED
RAB ACCEPTOR 1-RELATED,NULL,CUFF.35660.1
         (91 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g092690.1 | PRA1 (prenylated RAB acceptor) family protein ...   101   1e-22
Medtr2g100270.1 | PRA1 (prenylated RAB acceptor) family protein ...    67   3e-12
Medtr8g016150.1 | PRA1 family protein | HC | chr8:5396635-539578...    56   6e-09
Medtr2g100260.1 | PRA1 (prenylated RAB acceptor) family protein ...    49   9e-07

>Medtr6g092690.1 | PRA1 (prenylated RAB acceptor) family protein |
          HC | chr6:34903018-34902413 | 20130731
          Length = 201

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 60/93 (64%), Gaps = 4/93 (4%)

Query: 1  MTTYGTISEESEVLSDSNPFLSQVT--KDRIEAGLGTTRPWKEMIQPSHFKLPPSFFGAI 58
          MTTYGTIS+     + SNP L  VT  K+R +  +G TRPWKEMIQ SHFKLP SF+  I
Sbjct: 1  MTTYGTISDAEA--TPSNPNLHYVTEAKERFQDNIGVTRPWKEMIQFSHFKLPSSFYDTI 58

Query: 59 QRVNTNAKHFRANYXXXXXXXXXXXXXGHPISL 91
          QR+NTNAKHFRANY              HPISL
Sbjct: 59 QRINTNAKHFRANYVITMLLTIFLSLLEHPISL 91


>Medtr2g100270.1 | PRA1 (prenylated RAB acceptor) family protein |
          HC | chr2:43061479-43062573 | 20130731
          Length = 185

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 1  MTTYGTISEESEVLSDSNPFLSQVTKDRIEAGLGTTRPWKEMIQPSHFKLPPSFFGAIQR 60
          MT YGTI   S   + +  F+++  KDR+++GLGT RPWK ++    F LP +F  AI R
Sbjct: 1  MTNYGTIPTSSSPPATNLEFITR-AKDRLKSGLGTRRPWKLLVNLRSFNLPSNFHDAISR 59

Query: 61 VNTNAKHFRANYXXXXXXXXXXXXXGHPISL 91
          + TN   F+ NY              HPISL
Sbjct: 60 IKTNISFFQMNYAIILLIILFLSLLWHPISL 90


>Medtr8g016150.1 | PRA1 family protein | HC | chr8:5396635-5395781
          | 20130731
          Length = 180

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 2  TTYGTISEESEVLSDSNPFLSQVT--KDRIEAGLGTTRPWKEMIQPSHFKLPPSFFGAIQ 59
          +TYGTI       S + P L  +T  K RI+AGLGT RPWK M       +P     AI 
Sbjct: 3  STYGTIPT-----SPTPPKLEYITRGKQRIKAGLGTRRPWKTMFDIRSLGIPTGVPEAIS 57

Query: 60 RVNTNAKHFRANYXXXXXXXXXXXXXGHPISL 91
          RV  N  +FR NY              HP SL
Sbjct: 58 RVRVNISYFRMNYTMVMLLILFLSLLWHPYSL 89


>Medtr2g100260.1 | PRA1 (prenylated RAB acceptor) family protein |
          HC | chr2:43059090-43060141 | 20130731
          Length = 188

 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 2  TTYGTISEESEVLSDSNPFLSQVTKDRIEAGLGTTRPWKEMIQPSHFKLPPSFFGAIQRV 61
          TTYGTI      L  +   +S+ T + I+  +GT RPWK       F LP +F  AI R 
Sbjct: 3  TTYGTIPTPLSPLQTNLQLISR-TNESIKFVIGTRRPWKLFFNVQSFNLPRNFNDAISRY 61

Query: 62 NTNAKHFRANYXXXXXXXXXXXXXGHPISL 91
            N   F  NY              HP SL
Sbjct: 62 KINICFFEMNYTIILVIILFLSLLFHPTSL 91