Miyakogusa Predicted Gene

Lj2g3v0911970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0911970.1 Non Characterized Hit- tr|C5WNN8|C5WNN8_SORBI
Putative uncharacterized protein Sb01g050590
OS=Sorghu,56,3e-19,Tetraspannin,Tetraspanin/Peripherin; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL,gene.g40220.t1.1
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g101600.1 | tetraspanin family protein | HC | chr8:4270409...   106   5e-24
Medtr5g030070.1 | tetraspanin family protein | HC | chr5:1263909...    80   3e-16
Medtr8g066790.1 | tetraspanin family protein | HC | chr8:2777798...    79   9e-16
Medtr4g061010.1 | tetraspanin family protein | HC | chr4:2244942...    59   8e-10
Medtr4g112570.1 | tetraspanin family protein | HC | chr4:4599853...    54   4e-08
Medtr6g033335.1 | tetraspanin family protein | HC | chr6:1067973...    53   8e-08
Medtr1g095530.1 | tetraspanin family protein | HC | chr1:4297016...    52   2e-07
Medtr2g056130.1 | tetraspanin family protein | HC | chr2:2406959...    49   1e-06
Medtr4g129670.1 | tetraspanin family protein | HC | chr4:5404116...    49   1e-06

>Medtr8g101600.1 | tetraspanin family protein | HC |
           chr8:42704090-42701405 | 20130731
          Length = 269

 Score =  106 bits (264), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/77 (66%), Positives = 54/77 (70%)

Query: 1   MADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAY 60
           MAD DC LWNNDQNQLCYNCNACKAGLLG LRKEWRK                   CSA+
Sbjct: 193 MADSDCNLWNNDQNQLCYNCNACKAGLLGNLRKEWRKANIILIVAVVVLIWVYVIACSAF 252

Query: 61  KNAKTEDLFRRYKRGWV 77
           KNA+TEDLF RYK+GWV
Sbjct: 253 KNAQTEDLFTRYKQGWV 269


>Medtr5g030070.1 | tetraspanin family protein | HC |
           chr5:12639094-12641293 | 20130731
          Length = 269

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 48/76 (63%)

Query: 2   ADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYK 61
           AD DC  W+NDQ  LCYNC++CKAGLL  LRKEW++                   C A++
Sbjct: 194 ADMDCLQWSNDQTTLCYNCDSCKAGLLANLRKEWKRANVILIITVVVLIVVYLIGCFAFR 253

Query: 62  NAKTEDLFRRYKRGWV 77
           NAKTEDLFR+YK+G+ 
Sbjct: 254 NAKTEDLFRKYKQGYT 269


>Medtr8g066790.1 | tetraspanin family protein | HC |
           chr8:27777981-27780805 | 20130731
          Length = 269

 Score = 79.0 bits (193), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 47/74 (63%)

Query: 3   DPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYKN 62
           D DC  W+N+Q QLCYNC++CKAGLL  +R EWRK                   C A++N
Sbjct: 195 DMDCMKWSNEQTQLCYNCDSCKAGLLATIRIEWRKANVILIVTLIGLILVYLFGCFAFRN 254

Query: 63  AKTEDLFRRYKRGW 76
           AKTE+LFR+YK+G+
Sbjct: 255 AKTEELFRKYKQGY 268


>Medtr4g061010.1 | tetraspanin family protein | HC |
           chr4:22449429-22444525 | 20130731
          Length = 285

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 2   ADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRK 37
            +PDC  WNNDQ QLCY+C++CKAG+LG L+K WRK
Sbjct: 200 TNPDCNKWNNDQQQLCYDCDSCKAGVLGSLKKSWRK 235


>Medtr4g112570.1 | tetraspanin family protein | HC |
           chr4:45998533-45999649 | 20130731
          Length = 270

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 3   DPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWR 36
           + DC  WNN Q +LCY+CNACK G+L  +R +WR
Sbjct: 201 NSDCATWNNRQEKLCYDCNACKGGVLANIRNQWR 234


>Medtr6g033335.1 | tetraspanin family protein | HC |
           chr6:10679732-10677453 | 20130731
          Length = 283

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 3   DPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYKN 62
           D DCY WNN  N LCY+C++CKAG+L  +R +W K                   C A++N
Sbjct: 186 DIDCYRWNNAPNLLCYDCDSCKAGVLENIRTDWHKVSVLSVVILVFLIGIYSIGCCAFRN 245

Query: 63  AKTED 67
           A+  +
Sbjct: 246 ARRSE 250


>Medtr1g095530.1 | tetraspanin family protein | HC |
           chr1:42970165-42968109 | 20130731
          Length = 283

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 3   DPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYKN 62
           D DCY W+N+   LCY C++CKAG+L  +R+ W K                   C A++N
Sbjct: 186 DSDCYKWSNEPTLLCYECDSCKAGVLEDIRRNWHKLSVLTVTMLILLIGIYSIGCCAFRN 245

Query: 63  AK 64
           A+
Sbjct: 246 AR 247


>Medtr2g056130.1 | tetraspanin family protein | HC |
           chr2:24069593-24068098 | 20130731
          Length = 258

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 1   MADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWR 36
           M D DC+ W N +N+LCY+CN+CK  +L  +R +WR
Sbjct: 181 MNDTDCFTWKNKENKLCYDCNSCKGEVLANIRNQWR 216


>Medtr4g129670.1 | tetraspanin family protein | HC |
           chr4:54041164-54038606 | 20130731
          Length = 266

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 2   ADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKXXXXXXXXXXXXXXXXXXXCSAYK 61
            +PDC  W ND   LC+NC +CKAGLL  L+  W+K                   C A++
Sbjct: 197 TNPDCDTWTNDPKVLCFNCKSCKAGLLDNLKTNWKKVAVVNIIFLIFLIIVYSIGCCAFR 256

Query: 62  NAKTEDLFRRY 72
           N +  D ++RY
Sbjct: 257 NNR-RDGWKRY 266